BAC Information

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BAC

Clone NameB6Ng01-078P03
Chromosome5 (Build37)
Map Location 17,268,333 - 17,414,689
singlet/doubletdoublet
Overlap geneCd36
Upstream geneLOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c
Downstream geneGnat3, Gnai1, LOC100041818, LOC668167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078P03.bB6Ng01-078P03.g
ACCDH894503DH894504
length1,1461,128
definitionDH894503|Mus musculus domesticus DNA, BAC clone: B6Ng01-078P03, 5' end.DH894504|Mus musculus domesticus DNA, BAC clone: B6Ng01-078P03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,268,333 - 17,269,480)(17,413,538 - 17,414,689)
sequence
gaattcttctataattaaatacaaaccaagcatgtaatttcagaccctcc
tctgtatgtctgtgaagccttcagataaatggagactcatatatcagatt
tgtcgatacacgttcaaatgtctctttgtgctctattctttcctaccact
gtcttgctgacttatatatgtttcaggatatatttaaaaagaatccacgc
tcttgccagcagagtgggctgataggccaggcactggcaggcaatggctg
tcttgttctcatcttgtggagcctctctgactcagtattctgaaatctct
ccacccagcttgctaagtttcctctggcaggtcgttaccacaccagcccc
atacttcaaaattcccgtggccttttgtagtgcacttctggcaaacccac
actttgccgctgtacctttctctctggagcccgcttgaactgccgcatga
aggaaaacaccacacaaacttagttcagaatcaatggtaactcaatcgct
gggcacatcaactagaatcctaatcttgtaagccatataaatctaaatcc
tctgatggatttgccatataaaccaggagctacatcttgtcctcttccta
tcccagtcctaaatccccatatctctctcctgcggactctcttcctccct
caaacccggaagtcccacctacttgcccagtgattggttccttcattcat
taggggataattcattagggttcaaaagaagtcacctgagtacatgactc
attcctcattccagataacccctactgggaaagcagaattaacatcaaaa
tacaagcagcaccagggccattcacaacgtatatactattatatatgtta
ctaataatataatgttatatgatataattatatattatatactacgggtg
ataaatataagtggtaaacaaatgctcttttatttactgcaatatatagt
cctacaaaaaaaaattcttgtgcctttaacctacaactctgcccttccga
atactatgaggttttaaatgtttcaactttcaaaggtttttaaaacagaa
ctactaggtttttttgttttcagaggtcatgcttctagagagcatcaata
gtactttttttgtggtaacattgcattaataaatgaaagcttggga
gaattccctgttcggataaacctgaacaatttactggacagctcagtatt
aaattgtggccatgaagatgttttctcatttgcttatgcttgtttatata
tcaaatatcacatctgaatttttgtttgctttactgaagagtggtagagt
taattttatgtttcataagctataggttttaaagtcttattttgatttta
tttatcagtctttaatacaacacatactcagaggatggcatggggcttaa
gtatttaaaacttgttcaaatgtagataattctctttcctagtacacaat
cttattctttcttcttggaactctaagtcttgtacacagtaaagccatta
attcctagtgttatgtatgttacataatgggctattttctcttcagttgt
gttcttggaatctaagttcagacagaaaaaataaataaactcttataaca
gtttgaattgtttagactctttaatttttgtttcattttttaggactgaa
tatttcattcttgacattctcgtgaatagtatactcattgatatagatgg
atatgaagtttgaaaatattagactgttaatatttgcagaataattctac
atttcaaagttaaaatgtagtttaagcttcctggtcttatattagcaatg
atgaagagagaaagcttcccctgtgttctggttagtataactagaaaaaa
atccatattactagtatcatttaatgatttttaaattctaggtattgtat
cttttgataaattttatgtacttgtttaaattaaattgatattttaaagg
tttaaaattagattgcaaaaactaaattaaaaacttgaaaaagcacaaaa
ctcgtaaaagaaaccatataacctttagttcatgttttcctaccctaatt
cctgtcataacctcttttagctgttttctgttacaaatatcaaaatatcc
ctttcacaactggcatatgtggtagctaaatgtgatctagcatgtactct
cagatcaatcctgattctccatttatcagcttactagtctgtatatagtc
tgcttctattttcccactattagatggagagagacccttcaaatgtagta
tgcatcatgtaaaaaagtgtttagaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17268333_17269480
seq2: B6Ng01-078P03.b_49_1194

seq1  GAATTCTTCTATAATTAAATACAAACCAAGCATGTAATTTCAGACCCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTATAATTAAATACAAACCAAGCATGTAATTTCAGACCCTCC  50

seq1  TCTGTATGTCTGTGAAGCCTTCAGATAAATGGAGACTCATATATCAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATGTCTGTGAAGCCTTCAGATAAATGGAGACTCATATATCAGATT  100

seq1  TGTCGATACACGTTCAAATGTCTCTTTGTGCTCTATTCTTTCCTACCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGATACACGTTCAAATGTCTCTTTGTGCTCTATTCTTTCCTACCACT  150

seq1  GTCTTGCTGACTTATATATGTTTCAGGATATATTTAAAAAGAATCCACGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCTGACTTATATATGTTTCAGGATATATTTAAAAAGAATCCACGC  200

seq1  TCTTGCCAGCAGAGTGGGCTGATAGGCCAGGCACTGGCAGGCAATGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCAGCAGAGTGGGCTGATAGGCCAGGCACTGGCAGGCAATGGCTG  250

seq1  TCTTGTTCTCATCTTGTGGAGCCTCTCTGACTCAGTATTCTGAAATCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTCTCATCTTGTGGAGCCTCTCTGACTCAGTATTCTGAAATCTCT  300

seq1  CCACCCAGCTTGCTAAGTTTCCTCTGGCAGGTCGTTACCACACCAGCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCAGCTTGCTAAGTTTCCTCTGGCAGGTCGTTACCACACCAGCCCC  350

seq1  ATACTTCAAAATTCCCGTGGCCTTTTGTAGTGCACTTCTGGCAAACCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCAAAATTCCCGTGGCCTTTTGTAGTGCACTTCTGGCAAACCCAC  400

seq1  ACTTTGCCGCTGTACCTTTCTCTCTGGAGCCCGCTTGAACTGCCGCATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCCGCTGTACCTTTCTCTCTGGAGCCCGCTTGAACTGCCGCATGA  450

seq1  AGGAAAACACCACACAAACTTAGTTCAGAATCAATGGTAACTCAATCGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACACCACACAAACTTAGTTCAGAATCAATGGTAACTCAATCGCT  500

seq1  GGGCACATCAACTAGAATCCTAATCTTGTAAGCCATATAAATCTAAATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACATCAACTAGAATCCTAATCTTGTAAGCCATATAAATCTAAATCC  550

seq1  TCTGATGGATTTGCCATATAAACCAGGAGCTACATCTTGTCCTCTTCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGGATTTGCCATATAAACCAGGAGCTACATCTTGTCCTCTTCCTA  600

seq1  TCCCAGTCCTAAATCCCCATATCTCTCTCCTGCGGACTCTCTTCCTCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTCCTAAATCCCCATATCTCTCTCCTGCGGACTCTCTTCCTCCCT  650

seq1  CAAACCCGGAAGTCCCACCTACTTGCCCAGTGATTGGTTCCTTCATTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCGGAAGTCCCACCTACTTGCCCAGTGATTGGTTCCTTCATTCAT  700

seq1  TAGGGGATAATTCATTAGGGTTCAAAAGAAGTCACCTGAGTACATGACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGATAATTCATTAGGGTTCAAAAGAAGTCACCTGAGTACATGACTC  750

seq1  ATTCCTCATTCCAGATAACCCCTACTGGGAAAGCAGAATTAACATCAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCATTCCAGATAACCCCTACTGGGAAAGCAGAATTAACATCAAAA  800

seq1  TACAAGCAGCACCAGGGCCATTCACAACGTATATACTATTATATATGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGCAGCACCAGGGCCATTCACAACGTATATACTATTATATATGTTA  850

seq1  CTAATAATATAATGTTATATGATATAATTATATATTATATACTAGGGGTG  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTAATAATATAATGTTATATGATATAATTATATATTATATACTACGGGTG  900

seq1  ATAAATATAAGTGGTAAACAAATGCTCTTTTATTTACTGCAATATATAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATAAGTGGTAAACAAATGCTCTTTTATTTACTGCAATATATAGT  950

seq1  CCTACAAAAAAAAAATTCTTGTGCCTTTAACCTACAACTCTGCCCTTCCG  1000
      ||||| ||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCTAC-AAAAAAAAATTCTTGTGCCTTTAACCTACAACTCTGCCCTTCC-  998

seq1  GAATACTATGAGGTTTTAAATGTTTCAACTTTCAAAGGTTTTTAAAACAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTATGAGGTTTTAAATGTTTCAACTTTCAAAGGTTTTTAAAACAG  1048

seq1  AACTACTAGGGTGTTATG-TTTCAGAGGTCATGC-TCTAGAGAAAGCATA  1098
      |||||||||| | || || ||||||||||||||| |||||||  ||||| 
seq2  AACTACTAGGTTTTTTTGTTTTCAGAGGTCATGCTTCTAGAG--AGCAT-  1095

seq1  AAATAGTAC-TTTTTTGTGGT-ACA-TGCATTAAATAAAATGAAAGCTTG  1145
       |||||||| ||||||||||| ||| ||||||||   |||||||||||||
seq2  CAATAGTACTTTTTTTGTGGTAACATTGCATTAA--TAAATGAAAGCTTG  1143

seq1  GGA  1148
      |||
seq2  GGA  1146

seq1: chr5_17413538_17414689
seq2: B6Ng01-078P03.g_66_1193 (reverse)

seq1  ATTTCTAAAAACACTGTTTTTTTTACATGTATTGGCATACTACAATTTTG  50
      ||||||||| ||      ||||||||||| ||  ||||||||||  ||||
seq2  ATTTCTAAACAC------TTTTTTACATG-AT--GCATACTACA--TTTG  39

seq1  AAGTGTCTCTTCTCATCTTTAATAGTTGTGAAAATAGAAGCAGACTATAT  100
      ||| ||||||   ||||  |||||| || |||||||||||||||||||| 
seq2  AAGGGTCTCTCTCCATC--TAATAG-TGGGAAAATAGAAGCAGACTATA-  85

seq1  TACAGACTAGTTAAGCTGATAAATGGAGAATTCAGGATTTGATCTGAGAG  150
      |||||||||| ||||||||||||||||||| |||||| ||||||||||||
seq2  TACAGACTAG-TAAGCTGATAAATGGAGAA-TCAGGA-TTGATCTGAGAG  132

seq1  TACATTGCTAGAATCACATTTTAGCTACCACATTATGCCAGTTTGTGAAA  200
      |||| |||||| |||||| ||||||||||||| |||||||| ||||||||
seq2  TACA-TGCTAG-ATCACA-TTTAGCTACCACA-TATGCCAG-TTGTGAAA  177

seq1  GGGATTATTTTGATATTTGTAACAGAAAACAGCTAAAAGAGGTTATGACA  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGA-TATTTTGATATTTGTAACAGAAAACAGCTAAAAGAGGTTATGACA  226

seq1  GGAATTAGGGTAGGAAAACATGAACTAAAGGTTATATGGTTTCTTTTACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTAGGGTAGGAAAACATGAACTAAAGGTTATATGGTTTCTTTTACG  276

seq1  AGTTTTGTGCTTTTTCAAGTTTTTAATTTAGTTTTTGCAATCTAATTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGTGCTTTTTCAAGTTTTTAATTTAGTTTTTGCAATCTAATTTTA  326

seq1  AACCTTTAAAATATCAATTTAATTTAAACAAGTACATAAAATTTATCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTAAAATATCAATTTAATTTAAACAAGTACATAAAATTTATCAAA  376

seq1  AGATACAATACCTAGAATTTAAAAATCATTAAATGATACTAGTAATATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACAATACCTAGAATTTAAAAATCATTAAATGATACTAGTAATATGG  426

seq1  ATTTTTTTCTAGTTATACTAACCAGAACACAGGGGAAGCTTTCTCTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTCTAGTTATACTAACCAGAACACAGGGGAAGCTTTCTCTCTTC  476

seq1  ATCATTGCTAATATAAGACCAGGAAGCTTAAACTACATTTTAACTTTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGCTAATATAAGACCAGGAAGCTTAAACTACATTTTAACTTTGAA  526

seq1  ATGTAGAATTATTCTGCAAATATTAACAGTCTAATATTTTCAAACTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAATTATTCTGCAAATATTAACAGTCTAATATTTTCAAACTTCAT  576

seq1  ATCCATCTATATCAATGAGTATACTATTCACGAGAATGTCAAGAATGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCTATATCAATGAGTATACTATTCACGAGAATGTCAAGAATGAAA  626

seq1  TATTCAGTCCTAAAAAATGAAACAAAAATTAAAGAGTCTAAACAATTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGTCCTAAAAAATGAAACAAAAATTAAAGAGTCTAAACAATTCAA  676

seq1  ACTGTTATAAGAGTTTATTTATTTTTTCTGTCTGAACTTAGATTCCAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTATAAGAGTTTATTTATTTTTTCTGTCTGAACTTAGATTCCAAGA  726

seq1  ACACAACTGAAGAGAAAATAGCCCATTATGTAACATACATAACACTAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACTGAAGAGAAAATAGCCCATTATGTAACATACATAACACTAGGA  776

seq1  ATTAATGGCTTTACTGTGTACAAGACTTAGAGTTCCAAGAAGAAAGAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGGCTTTACTGTGTACAAGACTTAGAGTTCCAAGAAGAAAGAATA  826

seq1  AGATTGTGTACTAGGAAAGAGAATTATCTACATTTGAACAAGTTTTAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTGTACTAGGAAAGAGAATTATCTACATTTGAACAAGTTTTAAAT  876

seq1  ACTTAAGCCCCATGCCATCCTCTGAGTATGTGTTGTATTAAAGACTGATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGCCCCATGCCATCCTCTGAGTATGTGTTGTATTAAAGACTGATA  926

seq1  AATAAAATCAAAATAAGACTTTAAAACCTATAGCTTATGAAACATAAAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATCAAAATAAGACTTTAAAACCTATAGCTTATGAAACATAAAAT  976

seq1  TAACTCTACCACTCTTCAGTAAAGCAAACAAAAATTCAGATGTGATATTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTACCACTCTTCAGTAAAGCAAACAAAAATTCAGATGTGATATTT  1026

seq1  GATATATAAACAAGCATAAGCAAATGAGAAAACATCTTCATGGCCACAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATAAACAAGCATAAGCAAATGAGAAAACATCTTCATGGCCACAAT  1076

seq1  TTAATACTGAGCTGTCCAGTAAATTGTTCAGGTTTATCCGAACAGGGAAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACTGAGCTGTCCAGTAAATTGTTCAGGTTTATCCGAACAGGGAAT  1126

seq1  TC  1152
      ||
seq2  TC  1128