BAC Information

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BAC

Clone NameB6Ng01-079F11
Chromosome5 (Build37)
Map Location 32,337,879 - 32,512,784
singlet/doubletdoublet
Overlap geneBre, Fosl2, LOC672217
Upstream geneSlc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000
Downstream genePlb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079F11.bB6Ng01-079F11.g
ACCDH894778DH894779
length1,131839
definitionDH894778|Mus musculus domesticus DNA, BAC clone: B6Ng01-079F11, 5' end.DH894779|Mus musculus domesticus DNA, BAC clone: B6Ng01-079F11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,511,626 - 32,512,784)(32,337,879 - 32,338,713)
sequence
gaattccaggccagcgaggactatatagttagatcttgtctaaaaaacaa
acaaaacaaaatggcctttatacaattttacaaaaagtacatcagcattc
tgagaaagtctaattgcttttaatacatgtttaaaactctcattaaaaag
cataacatatctgaaaactataaaaaaaaattgaatgttgtttccccatg
ttggtgttatcttaattttataatgtatatacataatgagtcagatatta
agacttttgaatgtttaatcacttataataaaatgcattgcctagtagca
gtgaattacagttgagcaactttatcatcccaataaagaatgtagcccat
ctcaacaatgacaaaatattttatctttttaatttacttagtttgactag
cagaaaatagcttagagattttctaagcattaacaaaatgatatcttagt
aaagtttctcctttttaaataacttagtgtctgggggcagggcatcattt
gtgccacagcacacacgggggtcttaggacaaccaaagggactggagatt
aaatttagtaaccagcatgctaatccactgagctgtctgccagccccatg
ttctgacaacttagtcacctttaactggaaggtactactagctacctctc
ttctgagtaagacttaattacaaagactattacataaacaataaggttac
tcagatcctaaatgtttctgtttgtaaagattggaatttcctgtaattcc
attatgacaaggaaatttgatgagactctttgataaatatgtacactcac
tattttgtatgtatcagagacttagtaaaaatctcctgtttgtcaattct
atatgtgagcattcctgggggtgggggggggggcagggacccatagcgat
aagaaattcccttcagaagaggatttataatttacatgacttaagggtat
ttaactgatgtcactgtgttcttagcacctccagagtacttgactcttca
gaaaatgaataaaattaatttctttataaatctactttggaagaagtcct
tactaagtctaataggcataaaaaattctgtactttaaaaaaaataaaga
ggtaagaccatggagtgctatttactttaaa
gaattcctttcccacaagctctatttacaatcctgaacatctcaagcatt
gggtacattatgtttttttttttttcctaaaaaaaaaaaaatgttccctg
aaaccttcttcccttctcctttccccagttcaccaaattcttatctgaag
cttgagggagaagaaaatgggggctaatatgacaacaagatttgtacctt
cacaagtaaatatcacaactgagctgggtaactacttgtggaagcttgtt
aggtcacagtgactcacttgcgtagatgaggttatttttagagctgtaat
ttgtactgtttagaaaagaagaaagagatggtaaaaggctagatagctca
ttatagtttacagagctcatgaacccagcatccatgcaaaagatgactaa
gcaaggggtcgggtggtactttctctcagaatttcacagacgtgagtcat
ccacttcagcctgcagacacagcatcaggtacctgtgactcagctcccat
ttagacagagcactagaattcaattctgatacgcttttgtagctaagtag
tgaggaaattacatagcaaagcaaaataggcctttgtaccaggcagccat
ccaatgtttaagcaaggactgattgatcttcgtctctggtctttcaaaga
atctgttttatgatccatgctaggtgatgtctttttcattctgctgcgtc
acactgcagtgcatctcaccacactggctcttctgacccaagtattcagt
ctcacagctttctccactcccatgtccagccagcacgttcttaatatcag
gagtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_32511626_32512784
seq2: B6Ng01-079F11.b_49_1179 (reverse)

seq1  TTTAAAGGTAAAATAGCATTCATTGAGTCTTACCTTTTTTTTTTTTTTTT  50
      |||||||   |||||||| ||  || ||||||||               |
seq2  TTTAAAG--TAAATAGCACTCCATG-GTCTTACC---------------T  32

seq1  TTTTTTTTTTTTTAAGTTACAGAATTTTGTATTGGCTATGTAGACTTTGG  100
       ||| ||||||||||  ||||||||||| || || |||| ||||| || |
seq2  CTTTATTTTTTTTAAAGTACAGAATTTTTTA-TGCCTAT-TAGAC-TTAG  79

seq1  TAAGGACTTTCTTCCAAAGTAGATTTTATAAAGAAATTAAATTTTATTCA  150
      ||||||| ||||||||||||||| |||||||||||||| |||||||||||
seq2  TAAGGAC-TTCTTCCAAAGTAGA-TTTATAAAGAAATT-AATTTTATTCA  126

seq1  TTTTTCTGAAGAGTCAAGTTACTCTTGGGAGGTGCTAAGAACACAGTGAC  200
       ||||||||||||||||| ||||||  |||||||||||||||||||||||
seq2  -TTTTCTGAAGAGTCAAG-TACTCT--GGAGGTGCTAAGAACACAGTGAC  172

seq1  ATCAGTTAAAATACCCTTAAGTCATGTAAATTATAAATCCTCTTCTGAAG  250
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTT-AAATACCCTTAAGTCATGTAAATTATAAATCCTCTTCTGAAG  221

seq1  GGAATTTCTTATCGCTATGGGTCCCTG-CCCCACCCCCACCCCCAGGAAT  299
      ||||||||||||||||||||||||||| |||| |||||||||||||||||
seq2  GGAATTTCTTATCGCTATGGGTCCCTGCCCCCCCCCCCACCCCCAGGAAT  271

seq1  GCTCACATATAGAATTGACAAACAGGAGATTTTTACTAAGTCTCTGATAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACATATAGAATTGACAAACAGGAGATTTTTACTAAGTCTCTGATAC  321

seq1  ATACAAAATAGTGAGTGTACATATTTATCAAAGAGTCTCATCAAATTTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAATAGTGAGTGTACATATTTATCAAAGAGTCTCATCAAATTTCC  371

seq1  TTGTCATAATGGAATTACAGGAAATTCCAATCTTTACAAACAGAAACATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATAATGGAATTACAGGAAATTCCAATCTTTACAAACAGAAACATT  421

seq1  TAGGATCTGAGTAACCTTATTGTTTATGTAATAGTCTTTGTAATTAAGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATCTGAGTAACCTTATTGTTTATGTAATAGTCTTTGTAATTAAGTC  471

seq1  TTACTCAGAAGAGAGGTAGCTAGTAGTACCTTCCAGTTAAAGGTGACTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCAGAAGAGAGGTAGCTAGTAGTACCTTCCAGTTAAAGGTGACTAA  521

seq1  GTTGTCAGAACATGGGGCTGGCAGACAGCTCAGTGGATTAGCATGCTGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCAGAACATGGGGCTGGCAGACAGCTCAGTGGATTAGCATGCTGGT  571

seq1  TACTAAATTTAATCTCCAGTCCCTTTGGTTGTCCTAAGACCCCCGTGTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAATTTAATCTCCAGTCCCTTTGGTTGTCCTAAGACCCCCGTGTGT  621

seq1  GCTGTGGCACAAATGATGCCCTGCCCCCAGACACTAAGTTATTTAAAAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGCACAAATGATGCCCTGCCCCCAGACACTAAGTTATTTAAAAAG  671

seq1  GAGAAACTTTACTAAGATATCATTTTGTTAATGCTTAGAAAATCTCTAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACTTTACTAAGATATCATTTTGTTAATGCTTAGAAAATCTCTAAG  721

seq1  CTATTTTCTGCTAGTCAAACTAAGTAAATTAAAAAGATAAAATATTTTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCTGCTAGTCAAACTAAGTAAATTAAAAAGATAAAATATTTTGT  771

seq1  CATTGTTGAGATGGGCTACATTCTTTATTGGGATGATAAAGTTGCTCAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTGAGATGGGCTACATTCTTTATTGGGATGATAAAGTTGCTCAAC  821

seq1  TGTAATTCACTGCTACTAGGCAATGCATTTTATTATAAGTGATTAAACAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTCACTGCTACTAGGCAATGCATTTTATTATAAGTGATTAAACAT  871

seq1  TCAAAAGTCTTAATATCTGACTCATTATGTATATACATTATAAAATTAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGTCTTAATATCTGACTCATTATGTATATACATTATAAAATTAAG  921

seq1  ATAACACCAACATGGGGAAACAACATTCAATTTTTTTTTATAGTTTTCAG  999
      |||||||||||||||||||||||||||||||                   
seq2  ATAACACCAACATGGGGAAACAACATTCAATNNNNNNNNNNNNNNNNNNN  971

seq1  ATATGTTATGCTTTTTAATGAGAGTTTTAAACATGTATTAAAAGCAATTA  1049
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  NNATGTTATGCTTTTTAATGAGAGTTTTAAACATGTATTAAAAGCAATTA  1021

seq1  GACTTTCTCAGAATGCTGATGTACTTTTTGTAAAATTGTATAAAGGCCAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCTCAGAATGCTGATGTACTTTTTGTAAAATTGTATAAAGGCCAT  1071

seq1  TTTGTTTTGTTTGTTTTTTAGACAAGATCTAACTATATAGTCCTCGCTGG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTGTTTTTTAGACAAGATCTAACTATATAGTCCTCGCTGG  1121

seq1  CCTGGAATTC  1159
      ||||||||||
seq2  CCTGGAATTC  1131

seq1: chr5_32337879_32338713
seq2: B6Ng01-079F11.g_70_908

seq1  GAATTCCTTCCCCACAAGCTCTATTTACAATCCTGAACATCTCAAGCATT  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCCCACAAGCTCTATTTACAATCCTGAACATCTCAAGCATT  50

seq1  GGGTACATTATGTTTTTTTTTTTTTCCTAAAAAAAAAAAAATGTTCCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACATTATGTTTTTTTTTTTTTCCTAAAAAAAAAAAAATGTTCCCTG  100

seq1  AAACCTTCTTCCCTTCTCCTTTCCCCAGTTCACCAAATTCTTATCTGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTCTTCCCTTCTCCTTTCCCCAGTTCACCAAATTCTTATCTGAAG  150

seq1  CTTGAGGGAGAAGAAAATGGGGGCTAATATGACAACAAGATTTGTACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGGAGAAGAAAATGGGGGCTAATATGACAACAAGATTTGTACCTT  200

seq1  CACAAGTAAATATCACAACTGAGCTGGGTAACTACTTGTGGAAGCTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTAAATATCACAACTGAGCTGGGTAACTACTTGTGGAAGCTTGTT  250

seq1  AGGTCACAGTGACTCACTTGCGTAGATGAGGTTATTTTTAGAGCTGTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACAGTGACTCACTTGCGTAGATGAGGTTATTTTTAGAGCTGTAAT  300

seq1  TTGTACTGTTTAGAAAAGAAGAAAGAGATGGTAAAAGGCTAGATAGCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTGTTTAGAAAAGAAGAAAGAGATGGTAAAAGGCTAGATAGCTCA  350

seq1  TTATAGTTTACAGAGCTCATGAACCCAGCATCCATGCAAAAGATGACTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTTTACAGAGCTCATGAACCCAGCATCCATGCAAAAGATGACTAA  400

seq1  GCAAGGGGTCGGGTGGTACTTTCTCTCAGAATTTCACAGACGTGAGTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGGGTCGGGTGGTACTTTCTCTCAGAATTTCACAGACGTGAGTCAT  450

seq1  CCACTTCAGCCTGCAGACACAGCATCAGGTACCTGTGACTCAGCTCCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCAGCCTGCAGACACAGCATCAGGTACCTGTGACTCAGCTCCCAT  500

seq1  TTAGACAGAGCACTAGAATTCAATTCTGATACGCTTTTGTAGCTAAGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAGAGCACTAGAATTCAATTCTGATACGCTTTTGTAGCTAAGTAG  550

seq1  TGAGGAAATTACATAGCAAAGCAAAATAGGCCTTTGTACCAGGCAGCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAATTACATAGCAAAGCAAAATAGGCCTTTGTACCAGGCAGCCAT  600

seq1  CCAATGTTTAAGCAAGGACTGATTGATCTTCGTCTCTGGTCTTTCAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTTTAAGCAAGGACTGATTGATCTTCGTCTCTGGTCTTTCAAAGA  650

seq1  ATCTG-TTTATGATCCATGCTAGGTGATGTC-TTTTCATTCTGCTGCGTC  698
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATCTGTTTTATGATCCATGCTAGGTGATGTCTTTTTCATTCTGCTGCGTC  700

seq1  ACACTGCAGTGCATCTCACCACACTGGCTCTTCTGACCCAAGTATTCAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCAGTGCATCTCACCACACTGGCTCTTCTGACCCAAGTATTCAGT  750

seq1  CTCACAGC-TTCTCCACTCCCATGTCCAGCCAGCACG-TCCTAAAACCAG  796
      |||||||| |||||||||||||||||||||||||||| || ||| | |||
seq2  CTCACAGCTTTCTCCACTCCCATGTCCAGCCAGCACGTTCTTAATATCAG  800

seq1  GAGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTG  835
      |||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTG  839