BAC Information

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BAC

Clone NameB6Ng01-079F24
Chromosome5 (Build37)
Map Location 58,562,889 - 58,673,023
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
Downstream geneLOC100041385, LOC100041396, LOC666499, EG625870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079F24.bB6Ng01-079F24.g
ACCDH894800DH894801
length1,1841,062
definitionDH894800|Mus musculus domesticus DNA, BAC clone: B6Ng01-079F24, 5' end.DH894801|Mus musculus domesticus DNA, BAC clone: B6Ng01-079F24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,671,805 - 58,673,023)(58,562,889 - 58,563,977)
sequence
gaattctcaaattgcccaagctttggtttcttggggaaatgagaagcatg
cataagatgatcaaagctgtttctctcagctgttaaactgtgtgacacta
actttatccagctcactcttgagttgtgtgaagaactctgtgattcatta
atcacataatattttctgacactgaaaaataccttgaaaacaatgctgtg
ttcctgtttatccctacagttttatactgaggacttaggctgacattgag
ccaaggatttaggtgtgaattatgtattaaagaagcctgccaggtaaaaa
ttaatagagggtggaagaatcaagacaggaagtaatttaggagaggatgt
caatgttgcttatattttttgctttgcctaacttcacagtacctggtaag
tgaagccagagttgggatagtattatcatgactccaattacaaaaagcct
ttatttcagaagtgttgcatccaccctgaccagcaggaaagatgcaacag
cacactgtccttcttcaagcaggtttattcaggaacacttcgcattgcaa
tgcaggaacaggaatcccctgaacaaccacggggcacgccttaaataccc
tactgactcctcccaacctccccagtcacatcatggcagtccataggttc
acagcaagtgaggacacctcaggagagctgaggaggcatggcatctgcgc
agtgcaggcggctaggatgtggctaagtctgagaaaatgaggaagtcggg
cgcaggtcataagacttggtagccatcctgggcgtcatcttggggcgaca
accacacccgctcctcacacagaagtatatgaaactcttgtcccaagcct
ttgcttgttctatgcaggtatacctgggatgctcttctcatcatggttaa
actttcatgtctcagaattcacagaataaaatctatgcttcttctgcctc
cttttctgaccataaacctgcagtagattccttcaccatgtttaccctca
tgcattttatgtaatatataatttcttttctccctgtcttgtctctgtct
atctctgtctctccttgattctctctgctctgttcctctcctcactgcta
gagttttattaataaatcaattgttaacatttagaattggccttgtggaa
catgttggttctagcaagtataaatgatgacctt
gaattcaggtattctcaggacatattatgattatcacttatcccattggt
taaaattttcacgttctcataaatattttctaaaaactaaagtttttttt
tttttttttttttagctgggaaataccctgccaaggcaatagtatgtcaa
aagattacctttggtcttgaccactgacttttatatctcttagtaattaa
atatgtaggaagctaattcatttccagccattaattttcatttcaggtta
agtgctttgtctgtttgacttcatttcaaattatcaggacctgaacctag
acatccctggcaaaacataaaaaaactcaaaattccaggagtccaattaa
tctcttttctgacagaagtgaccatagagaaatgagaaaagaacatcttt
taaaaaacaacatctaaatcttccatgagatatggaagaacaaaacataa
aagtaaatttaaggttaggagctttgactattgtttttaggacagcattt
ctgtataactggtgtgccagatatttttaaagatgaccacttctatttat
tgttgtatattgatgtggaatgttcatcaggaaaatgaactttttttcca
ataaaaataactcagtaagtaaatgaaaccattattatttacattaaacc
aatgtatagcatcaataaaatgactcctaatgatattctgcttcctccag
caacaggtggcaacaaatgcaaagacccatgtggaggaatgagtcagcaa
atcaagattggcagctcacattgggccacacaatcacaacagtagcatct
gtgcctgttaacccctaagcctgcctgacaccctgagagacatatgatga
ctcacagagtgaccagaataccaatcagatggtaccaactacatggaatg
agcatatgagcaagggagcccatgtgagggtctaaagtgtgcccatccca
taaagagctgctttgcgctacagactctgagtctgtgttgtgatctgagc
ttctcacctcacccctcaggtctcttgtagtgcaacacgaactgcagcag
aactatatgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_58671805_58673023
seq2: B6Ng01-079F24.b_46_1229 (reverse)

seq1  AAGGTCATCAATTTTATACTTTCTGCCTTTTAGAAACCACAACATTGTTC  50
      ||||||||||  ||||||||| |       ||||| | |||    |||| 
seq2  AAGGTCATCA--TTTATACTTGC-------TAGAACCAACA----TGTT-  36

seq1  CCCACAAGACCAATTTCTTATAAATGTTTAACAAATTTGATTTATTAATA  100
       ||||||| ||||    || |||||| |||||||  ||||||||||||||
seq2  -CCACAAGGCCAA----TTCTAAATG-TTAACAA--TTGATTTATTAATA  78

seq1  AAACTCTTAAGCAGTGAGGAAGAGAAACAGAGGCAGAGAGAAACAGAGAG  150
      |||||||  |||||||||| |||| |||||| |||||||||| ||  |||
seq2  AAACTCT--AGCAGTGAGG-AGAGGAACAGA-GCAGAGAGAATCAAGGAG  124

seq1  AGACAGAGATAGACAGAGACAAAGACAGGGAGAAAAAGGAAATTATTATT  200
      |||||||||||||||||||| |||||||||||||||  ||||||||   |
seq2  AGACAGAGATAGACAGAGAC-AAGACAGGGAGAAAA--GAAATTAT--AT  169

seq1  ATTACATAAAAATGGCATGAGGGTAAAACATGGTGAAGGAATCTACTGCA  250
      |||||||||||   |||||||||| |||||||||||||||||||||||||
seq2  ATTACATAAAA--TGCATGAGGGT-AAACATGGTGAAGGAATCTACTGCA  216

seq1  GGTTTATGGTCAGAAAAAGGAGGCAGAAGAAGCATAGATTTTATTCTGTG  300
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGTTTATGGTCAG-AAAAGGAGGCAGAAGAAGCATAGATTTTATTCTGTG  265

seq1  AATTCTGAGACATGAAAGTTTAACCATGATGAGAAGAGCATCCCAGGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGAGACATGAAAGTTTAACCATGATGAGAAGAGCATCCCAGGTAT  315

seq1  ACCTGCATAGAACAAGCAAAGGCTTGGGACAAGAGTTTCATATACTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCATAGAACAAGCAAAGGCTTGGGACAAGAGTTTCATATACTTCTG  365

seq1  TGTGAGGAGCGGGTGTGGTTGTCGCCCCAAGATGACGCCCAGGATGGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGAGCGGGTGTGGTTGTCGCCCCAAGATGACGCCCAGGATGGCTA  415

seq1  CCAAGTCTTATGACCTGCGCCCGACTTCCTCATTTTCTCAGACTTAGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCTTATGACCTGCGCCCGACTTCCTCATTTTCTCAGACTTAGCCA  465

seq1  CATCCTAGCCGCCTGCACTGCGCAGATGCCATGCCTCCTCAGCTCTCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTAGCCGCCTGCACTGCGCAGATGCCATGCCTCCTCAGCTCTCCTG  515

seq1  AGGTGTCCTCACTTGCTGTGAACCTATGGACTGCCATGATGTGACTGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTCCTCACTTGCTGTGAACCTATGGACTGCCATGATGTGACTGGGG  565

seq1  AGGTTGGGAGGAGTCAGTAGGGTATTTAAGGCGTGCCCCGTGGTTGTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGGAGGAGTCAGTAGGGTATTTAAGGCGTGCCCCGTGGTTGTTCA  615

seq1  GGGGATTCCTGTTCCTGCATTGCAATGCGAAGTGTTCCTGAATAAACCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATTCCTGTTCCTGCATTGCAATGCGAAGTGTTCCTGAATAAACCTG  665

seq1  CTTGAAGAAGGACAGTGTGCTGTTGCATCTTTCCTGCTGGTCAGGGTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGAAGGACAGTGTGCTGTTGCATCTTTCCTGCTGGTCAGGGTGGA  715

seq1  TGCAACACTTCTGAAATAAAGGCTTTTTGTAATTGGAGTCATGATAATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACACTTCTGAAATAAAGGCTTTTTGTAATTGGAGTCATGATAATAC  765

seq1  TATCCCAACTCTGGCTTCACTTACCAGGTACTGTGAAGTTAGGCAAAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCAACTCTGGCTTCACTTACCAGGTACTGTGAAGTTAGGCAAAGCA  815

seq1  AAAAATATAAGCAACATTGACATCCTCTCCTAAATTACTTCCTGTCTTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATAAGCAACATTGACATCCTCTCCTAAATTACTTCCTGTCTTGA  865

seq1  TTCTTCCACCCTCTATTAATTTTTACCTGGCAGGCTTCTTTAATACATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCACCCTCTATTAATTTTTACCTGGCAGGCTTCTTTAATACATAA  915

seq1  TTCACACCTAAATCCTTGGCTCAATGTCAGCCTAAGTCCTCAGTATAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACCTAAATCCTTGGCTCAATGTCAGCCTAAGTCCTCAGTATAAAA  965

seq1  CTGTAGGGATAAACAGGAACACAGCATTGTTTTCAAGGTATTTTTCAGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGGATAAACAGGAACACAGCATTGTTTTCAAGGTATTTTTCAGTG  1015

seq1  TCAGAAAATATTATGTGATTAATGAATCACAGAGTTCTTCACACAACTCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAATATTATGTGATTAATGAATCACAGAGTTCTTCACACAACTCA  1065

seq1  AGAGTGAGCTGGATAAAGTTAGTGTCACACAGTTTAACAGCTGAGAGAAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGCTGGATAAAGTTAGTGTCACACAGTTTAACAGCTGAGAGAAA  1115

seq1  CAGCTTTGATCATCTTATGCATGCTTCTCATTTCCCCAAGAAACCAAAGC  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTGATCATCTTATGCATGCTTCTCATTTCCCCAAGAAACCAAAGC  1165

seq1  TTGGGCAATTTGAGAATTC  1219
      |||||||||||||||||||
seq2  TTGGGCAATTTGAGAATTC  1184

seq1: chr5_58562889_58563977
seq2: B6Ng01-079F24.g_66_1127

seq1  GAATTCAGGTATTCTCAGGACATATTATGATTATCACTTATCCCATTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTATTCTCAGGACATATTATGATTATCACTTATCCCATTGGT  50

seq1  TAAAATTTTCACGTTCTCATAAATATTTTCTAAAAACTAAAGTTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTTCACGTTCTCATAAATATTTTCTAAAAACTAAAGTTTTTTTT  100

seq1  TTTTTTTTTTTTTAGCTGGGAAATACCCTGCCAAGGCAATAGTATGTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTAGCTGGGAAATACCCTGCCAAGGCAATAGTATGTCAA  150

seq1  AAGATTACCTTTGGTCTTGACCACTGACTTTTATATCTCTTAGTAATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTACCTTTGGTCTTGACCACTGACTTTTATATCTCTTAGTAATTAA  200

seq1  ATATGTAGGAAGCTAATTCATTTCCAGCCATTAATTTTCATTTCAGGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAGGAAGCTAATTCATTTCCAGCCATTAATTTTCATTTCAGGTTA  250

seq1  AGTGCTTTGTCTGTTTGACTTCATTTCAAATTATCAGGACCTGAACCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTTGTCTGTTTGACTTCATTTCAAATTATCAGGACCTGAACCTAG  300

seq1  ACATCCCTGGCAAAACATAAAAAAACTCAAAATTCCAGGAGTCCAATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCTGGCAAAACATAAAAAAACTCAAAATTCCAGGAGTCCAATTAA  350

seq1  TCTCTTTTCTGACAGAAGTGACCATAGAGAAATGAGAAAAGAACATCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTCTGACAGAAGTGACCATAGAGAAATGAGAAAAGAACATCTTT  400

seq1  TAAAAAACAACATCTAAATCTTCCATGAGATATGGAAGAACAAAACATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAACAACATCTAAATCTTCCATGAGATATGGAAGAACAAAACATAA  450

seq1  AAGTAAATTTAAGGTTAGGAGCTTTGACTATTGTTTTTAGGACAGCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATTTAAGGTTAGGAGCTTTGACTATTGTTTTTAGGACAGCATTT  500

seq1  CTGTATAACTGGTGTGCCAGATATTTTTAAAGATGACCACTTCTATTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAACTGGTGTGCCAGATATTTTTAAAGATGACCACTTCTATTTAT  550

seq1  TGTTGTATATTGATGTGGAATGTTCATCAGGAAAATGAACTTTTTTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTATATTGATGTGGAATGTTCATCAGGAAAATGAACTTTTTTTCCA  600

seq1  ATAAAAATAACTCAGTAAGTAAATGAAACCATTATTATTTACATTAAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATAACTCAGTAAGTAAATGAAACCATTATTATTTACATTAAACC  650

seq1  AATGTATAGCATCAATAAAATGACTCCTAATGATATTCTGCTTCCTCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATAGCATCAATAAAATGACTCCTAATGATATTCTGCTTCCTCCAG  700

seq1  CAACAGGTGGCAACAAATGCAAAGACCCATGTGGAGGAATGAGTCAGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGTGGCAACAAATGCAAAGACCCATGTGGAGGAATGAGTCAGCAA  750

seq1  ATCAAGATTGGCAGCTCACATTGGGCCACACAATCACAACAGTAGCATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGATTGGCAGCTCACATTGGGCCACACAATCACAACAGTAGCATCT  800

seq1  GTGCCTGTTAACCCCTAAGCCTGCCTGACACCCTGAGAGACATATGATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGTTAACCCCTAAGCCTGCCTGACACCCTGAGAGACATATGATGA  850

seq1  CTCACAGAGTGACCAGAATAACCAATCAGATGGTACCAACTACATGGAAT  900
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTCACAGAGTGACCAGAAT-ACCAATCAGATGGTACCAACTACATGGAAT  899

seq1  GAGCATAATGAGCCAAGGGAGCCCATGTGAAGGGTCTAAAGGTGTGCCCA  950
      |||||| ||||| |||||||||||||||| |||||||||| |||||||||
seq2  GAGCAT-ATGAG-CAAGGGAGCCCATGTG-AGGGTCTAAA-GTGTGCCCA  945

seq1  ATTCCCATTAAAAGAGCTTGCTTTTGCCGCTTACCAGACTCCTGGAGTCT  1000
        ||||||  ||||||| ||||||   ||||   |||||||   ||||||
seq2  --TCCCAT--AAAGAGC-TGCTTT--GCGCT--ACAGACTC--TGAGTCT  984

seq1  GTGTTGTTGATTCTGAGCCTTCTCACCTCACCCCTCAAGGGTCTC-TGTA  1049
      |||||| ||| |||||| |||||||||||||||||||  |||||| ||||
seq2  GTGTTG-TGA-TCTGAG-CTTCTCACCTCACCCCTCA--GGTCTCTTGTA  1029

seq1  GGTTGCAAACAACGGACCTGCAGCCAGACATTATATGAAA  1089
      |  ||| ||||   || |||||| |||| | |||||||||
seq2  G--TGC-AACA--CGAACTGCAG-CAGA-ACTATATGAAA  1062