BAC Information

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BAC

Clone NameB6Ng01-079I21
Chromosome5 (Build37)
Map Location 87,799,676 - 87,800,869
singlet/doubletsinglet
Overlap geneLOC665483, LOC665494
Upstream geneTmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476
Downstream geneLOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079I21.bB6Ng01-079I21.g
ACCDH894930DH894931
length1,1881,235
definitionDH894930|Mus musculus domesticus DNA, BAC clone: B6Ng01-079I21, 5' end.DH894931|Mus musculus domesticus DNA, BAC clone: B6Ng01-079I21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctcatatttttagttaaaagataatatggtaaatagaggttga
ctgacttatgaaatcttaatgccaccatgtagccaataggagttttacag
cctgcattatctacactgatagctattgctaaagattggtcttcaattga
ttttggatttgaagagctggtatttcactatacatatttgttttgataat
aatgtatataaaacattttctgttacttcactcaatcatagaaaacccca
tctttgctatcaatggaatatattaccttgaggtatggtaaaaatccact
tatgtaggaaagattttagagcctgtgaagcaagccttccttcaggctta
tagtattcactatatggatgatattctgttagtcacctccaaagagaaag
agctacaatgtgtgtgtgacatgatttaggatgtgctacataaaaacgct
cttataatcataccagaaaaggtacaaagatcagacatggtataatatat
ggtataatatatgggacaactgctaacaagaacacctgttaatacccatt
aaaatgtcagacaggacaggacatttaagacattttctaaatttattagg
gactaacaattccctacatgctacttttaaaaagtgtatttctttagttt
tatgtgcattagtcttctacctccatgtcgggggtgggggcggttattga
ggggcagggataatgtgtgtcccagaacctttagaactggagatacagac
agttctgaaatggcatataggtgctgggaactgaaactggattctctgga
agagcagtcagtgcgcttaaacactgagacatctctacagccctgctaca
tactactttaagaatacccaattaatcactagccaactgtttaaaactat
gaaaggtgagatgggattggatacatgttatttatctgcagaaataaatt
agattaggtatagatccaaataaagagcatttctgtattacatggctcct
ttgtaccctttaattacatatattcccactaaattgtcttctatatgtat
tgcagcacaagagagcaaatttttgaatagataattttacctcataaatg
taactgccatgccttctttccttgctcattagaaatcagggtaggaatta
atgtcactcaatatggaatatccttgcgtatactgtac
gaattctttgtttagttctgtacctcaatttttttatttatttttaatgg
ggttatttgaatttctggagttcagcttcttgagctctttgtatatattg
gatattagtcccctatcagatttaggattggtaaaaagtctttccaaatc
tgttggtggctttttgtcttattgatagtatcttttgccctacagaagct
ttgcaattatatgaggtcctatttgttgattcttgattttacaggacagg
ctattgctcttctgtttaggatatttctccctatgcccatatcttcaaga
cttttccccactttctcctctataaatttcagtgtctctggttttatgtg
gagttctttgatccacttagacttgagctttgtacaaggagataaaaatg
gagcaatttacattcttctatatgttaactgccaggtgtgccagcaccat
ttgttgaaaatgctgtcttttttccactggatggttttagctctcttgta
aaaaatcaagtaaccatatgtatgtgggttcatttctgggtcttcaattt
tattccattgatctacctgtctgttgctgtaccagtaccatgcagttttt
gtcacaattgctctgtcatacagcttgaggtcagacatggtgatttcccc
agaggttcttttattgttgagaatagtttgtgctatcctgggtttctttg
ttattccagatgaatttgcaaattgccctttctaactcagtgaagaattg
agttggaatttggatggggattgcattgaatctgtagattgcttttggca
agatagccattttttactacattaagcctgccaatccatgagcatgggag
atctttccatcttctgagatcttctttaatttctgtcttcagaaacttga
agtttttgtcatacagatcttagggttatctatcttgttgattttctcaa
agaaccacctcctggtttggttgattctttgaatagtgttttttgttcca
cttgggtgatttcagccctaagtttatttctgctgactacgcctcttgga
gtgaatatgcttccttaagtccaagagctctaggtgttgctgtcagacct
gcctaggatgctctctctagttctcttttggaagcactcaagcataggag
tttcctctaagacttcattgttctaagtgaatgttaggcttcactttcta
ttcaactcaaaaagagcgcctataatatactctcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_87799676_87800869
seq2: B6Ng01-079I21.b_68_1237

seq1  AGTTAAAAGATAATATGGTAAATAGAGGTTGACTGACTTATGAAATCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAAGATAATATGGTAAATAGAGGTTGACTGACTTATGAAATCTTA  50

seq1  ATGCCACCATGTAGCCAATAGGAGTTTTACAGCCTGCATTATCTACACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACCATGTAGCCAATAGGAGTTTTACAGCCTGCATTATCTACACTG  100

seq1  ATAGCTATTGCTAAAGATTGGTCTTCAATTGATTTTGGATTTGAAGAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTATTGCTAAAGATTGGTCTTCAATTGATTTTGGATTTGAAGAGCT  150

seq1  GGTATTTCACTATACATATTTGTTTTGATAATAATGTATATAAAACATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTCACTATACATATTTGTTTTGATAATAATGTATATAAAACATTT  200

seq1  TCTGTTACTTCACTCAATCATAGAAAACCCCATCTTTGCTATCAATGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTACTTCACTCAATCATAGAAAACCCCATCTTTGCTATCAATGGAA  250

seq1  TATATTACCTTGAGGTATGGTAAAAATCCACTTATGTAGGAAAGATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTACCTTGAGGTATGGTAAAAATCCACTTATGTAGGAAAGATTTTA  300

seq1  GAGCCTGTGAAGCAAGCCTTCCTTCAGGCTTATAGTATTCACTATATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGTGAAGCAAGCCTTCCTTCAGGCTTATAGTATTCACTATATGGA  350

seq1  TGATATTCTGTTAGTCACCTCCAAAGAGAAAGAGCTACAATGTGTGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTCTGTTAGTCACCTCCAAAGAGAAAGAGCTACAATGTGTGTGTG  400

seq1  ACATGATTTAGGATGTGCTACATAAAAACGCTCTTATAATCATACCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATTTAGGATGTGCTACATAAAAACGCTCTTATAATCATACCAGAA  450

seq1  AAGGTACAAAGATCAGACATGGTATAATATATGGTATAATATATGGGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTACAAAGATCAGACATGGTATAATATATGGTATAATATATGGGACA  500

seq1  ACTGCTAACAAGAACACCTGTTAATACCCATTAAAATGTCAGACAGGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTAACAAGAACACCTGTTAATACCCATTAAAATGTCAGACAGGACA  550

seq1  GGACATTTAAGACATTTTCTAAATTTATTAGGGACTAACAATTCCCTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTTAAGACATTTTCTAAATTTATTAGGGACTAACAATTCCCTACA  600

seq1  TGCTACTTTTAAAAAGTGTATTTCTTTAGTTTTATGTGCATTAGTCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTTTTAAAAAGTGTATTTCTTTAGTTTTATGTGCATTAGTCTTCT  650

seq1  ACCTCCATGTCGGGGGTGGGGGCGGTTATTGAGGGGCAGGGATAATGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCATGTCGGGGGTGGGGGCGGTTATTGAGGGGCAGGGATAATGTGT  700

seq1  GTCCCAGAACCTTTAGAACTGGAGATACAGACAGTTCTGAAATGGCATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGAACCTTTAGAACTGGAGATACAGACAGTTCTGAAATGGCATAT  750

seq1  AGGTGCTGGGAACTGAAACTGGATTCTCTGGAAGAGCAGTCAGTGCGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTGGGAACTGAAACTGGATTCTCTGGAAGAGCAGTCAGTGCGCTT  800

seq1  AAACACTGAGACATCTCTACAGCCCTGCTACATACTACTTTAAGAATACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTGAGACATCTCTACAGCCCTGCTACATACTACTTTAAGAATACC  850

seq1  CAATTAATCACTAGCCAACTGTTTAAAACTATGAAAGGTGAGATGGGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAATCACTAGCCAACTGTTTAAAACTATGAAAGGTGAGATGGGATT  900

seq1  GGATACATGTTTATTTTATCTGCAGAAATAAATTAAGAATTAAGGTTATT  950
      |||||||||||   |||||||||||||||||||| |||  | ||||   |
seq2  GGATACATGTT--ATTTATCTGCAGAAATAAATT-AGA--TTAGGT--AT  943

seq1  AGAATCCAAATAAAAGAGGCATTTCTGTATTACATGGCTCCTTTGTACCC  1000
      || |||||||| ||||| ||||||||||||||||||||||||||||||||
seq2  AG-ATCCAAAT-AAAGA-GCATTTCTGTATTACATGGCTCCTTTGTACCC  990

seq1  TTTAAATTTACATATATTCCCCACTAAATTGTCTTCTATATGTATTGCAG  1050
      |||||  ||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTAA--TTACATATATT-CCCACTAAATTGTCTTCTATATGTATTGCAG  1037

seq1  CACAAGAGAGCAAATCTTTGAAATAGATATATTTACTCCATAAAATGTAA  1100
      ||||||||||||||| |||| ||||||||  |||||  ||| |||||| |
seq2  CACAAGAGAGCAAATTTTTG-AATAGATAATTTTACCTCAT-AAATGT-A  1084

seq1  ACTG-CATGCCTTTCTTTTCTTGCTCAATTAGGAAATCAGGTGAGGATAT  1149
      |||| |||||| |||||| ||||||| |||| |||||||||  ||||  |
seq2  ACTGCCATGCC-TTCTTTCCTTGCTC-ATTA-GAAATCAGGGTAGGAATT  1131

seq1  AATGTCA-TCAATTATATGGATATATTCCTTGCTGTATTACTGTAC  1194
      ||||||| |||   ||||||| ||| ||||||| ||| ||||||||
seq2  AATGTCACTCA---ATATGGA-ATA-TCCTTGC-GTA-TACTGTAC  1170