BAC Information

Click to search

BAC

Clone NameB6Ng01-080G03
Chromosome5 (Build37)
Map Location 6,053,412 - 6,054,540
singlet/doubletsinglet
Overlap genenone
Upstream genePftk1, 1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
Downstream geneLOC100041208, EG435830
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080G03.bB6Ng01-080G03.g
ACCDH895539DH895540
length1,1171,233
definitionDH895539|Mus musculus domesticus DNA, BAC clone: B6Ng01-080G03, 5' end.DH895540|Mus musculus domesticus DNA, BAC clone: B6Ng01-080G03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttcttatctcatttatctgcttttgagtcttcaatatgatca
ttgattcatttgaaaagcaggatctgaaatctttctcaaacatttcaacc
actttagttgggagtttgtgaacatggcatggtagattgcattgtattct
tcacattacatcactgtgttctgtgcatctgtggagacgggtatgacttc
tagtttcttaccttttgttttgttttgttttgttttgttttgttttgttt
tgttttgttttgttttatgtgagtccactctgaggtttgtctttactagt
gcttatgttttcttctactacttagggaaggcagtttcatgttcccttaa
tgactcagttggtcagagatacttgtgaaaatcatttatatcctgaatat
tctcagagataatagtgttggggtatcaaatgggaaaaatgtacttttta
catatttctaaaagctaaggtattaatatttgcaaattgaggaaggattg
ggagaagctggaaagaagtggcaaaagatgtatgaagaggaaactgtata
actgggggatgtgagaggcagcagaaactatcataaatgtagaattctag
aaaagaaatgttttgtaggtctagaaaagaaagagatagattgtcataaa
actcacttctgttcagaagttataccacagtagcttaacaaatgaagtaa
aactgcaataattaaaaattagaaatatataaaaagcaattaaaatgata
actaaaatagacaggagcacaaaagagaaggtgttattttgcttttatgc
agtttttcttccttgctggggtattatttctgtttctccatatattatca
tttgtagcctttttcacagctgctgggggtgactgctaatatcagtaatt
tagacaagtgaagtcaatgctccctttaaagagaaagatttctgtgagct
agtctctttttatgtcagaataaacattcaaagcccttctgctctcctct
gctcaaccaggtagcatattggtccaggtgcattaggactgactttttcg
agtcagagtcttgcagctatgcgtgtaacatatcttctatctgtttcgga
tctaggcaggggttggg
gaattcccatgctcatggattggcaggattaatatagtcaaaatagctat
ccagctggaagcaatctacagattcaatgcaatccccatcaaaataccaa
ctatatttttcagtgagttagaaagggcaatttggaggtgtccgcctggc
ttgggaggcggcctcagcctcagcagcagcggtcgccatctgggttccgg
gactccgcgggacctaggaaattagtctgaacaggttagagggtgcgcca
gagaaccggacagcttctgggacgggcggaagcacagagccgctgaggca
gcacccttggcgggccgcagacagccggccaccatccggaccagaggaca
ggtgtccgcctggcttgggaggcagcctcagcctcaggagcagcggtcaa
tgtcttggttccaggactccctggtacttaggaatttagtttgaacaggt
gagagtctgcaccacagaagctgacagcttctgggaactgccaaagcaac
acagcttctgagagaggccctgttttgggccttcttcttcgaccaggagg
aggtccaaaaacaagatatctgtgcaccttccctgtaagagagcttgcca
gcagagagtgctctgagcactgaaactcagaggagagaatctgtctccca
ggtctgctgatagacggtaacagaatcaccagaagaacaatctctaaaca
gagtcaactataactactaactccagagattaccagatggcgaaaggtaa
acgtaggaatcctactaataggaaccaagaccactcaccatcatcagaac
ccagcactcccacttcgcccagtccagggcaccccaacacacccgaaaac
ctagacctagatttaaaagcatatctcatgatgatggtagaggacatcaa
gaaggactttaataatcacttaaagaaatacaggagaacactgctaagag
ttacaagtccttaagaaaacaggaaaacacatcaaacaggtagaagtcct
tacagaaaagaggaaaaacatataaacaggtgatgaaatgacaaaccata
ctagacttataggaagttgaacaataaggaaactcatagtggaggcaact
gggaatgaaatccctagaagaaatctggacatgactcagctcgcaacgaa
ttcaaagattggagagatcagtccggatccatagaactcgccacattaag
aatggtaatggcaagagactcctatctctagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_6053412_6054540
seq2: B6Ng01-080G03.b_48_1164

seq1  GAATTCATTTCTTATCTCATTTATCTGCTTTTGAGTCTTCAATATGATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCTTATCTCATTTATCTGCTTTTGAGTCTTCAATATGATCA  50

seq1  TTGATTCATTTGAAAAGCAGGATCTGAAATCTTTCTCAAACATTTCAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCATTTGAAAAGCAGGATCTGAAATCTTTCTCAAACATTTCAACC  100

seq1  ACTTTAGTTGGGAGTTTGTGAACATGGCATGGTAGATTGCATTGTATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGTTGGGAGTTTGTGAACATGGCATGGTAGATTGCATTGTATTCT  150

seq1  TCACATTACATCACTGTGTTCTGTGCATCTGTGGAGACGGGTATGACTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTACATCACTGTGTTCTGTGCATCTGTGGAGACGGGTATGACTTC  200

seq1  TAGTTTCTTACCTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCTTACCTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTT  250

seq1  TGTTTTGTTTTGTTTTATGTGAGTCCACTCTGAGGTTTGTCTTTACTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTGTTTTATGTGAGTCCACTCTGAGGTTTGTCTTTACTAGT  300

seq1  GCTTATGTTTTCTTCTACTACTTAGGGAAGGCAGTTTCATGTTCCCTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATGTTTTCTTCTACTACTTAGGGAAGGCAGTTTCATGTTCCCTTAA  350

seq1  TGACTCAGTTGGTCAGAGATACTTGTGAAAATCATTTATATCCTGAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCAGTTGGTCAGAGATACTTGTGAAAATCATTTATATCCTGAATAT  400

seq1  TCTCAGAGATAATAGTGTTGGGGTATCAAATGGGAAAAATGTACTTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGATAATAGTGTTGGGGTATCAAATGGGAAAAATGTACTTTTTA  450

seq1  CATATTTCTAAAAGCTAAGGTATTAATATTTGCAAATTGAGGAAGGATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTCTAAAAGCTAAGGTATTAATATTTGCAAATTGAGGAAGGATTG  500

seq1  GGAGAAGCTGGAAAGAAGTGGCAAAAGATGTATGAAGAGGAAACTGTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGCTGGAAAGAAGTGGCAAAAGATGTATGAAGAGGAAACTGTATA  550

seq1  ACTGGGGGATGTGAGAGGCAGCAGAAACTATCATAAATGTAGAATTCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGGATGTGAGAGGCAGCAGAAACTATCATAAATGTAGAATTCTAG  600

seq1  AAAAGAAATGTTTTGTAGGTCTAGAAAAGAAAGAGATAGATTGTCATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAATGTTTTGTAGGTCTAGAAAAGAAAGAGATAGATTGTCATAAA  650

seq1  ACTCACTTCTGTTCAGAAGTTATACCACAGTAGCTTAACAAATGAAGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTTCTGTTCAGAAGTTATACCACAGTAGCTTAACAAATGAAGTAA  700

seq1  AACTGCAATAATTAAAAATTAGAAATATATAAAAAGCAATTAAAATGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAATAATTAAAAATTAGAAATATATAAAAAGCAATTAAAATGATA  750

seq1  ACTAAAATAGACAGGAGCACAAAAGAGAAGGTGTTATTTTGCTTTTATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAATAGACAGGAGCACAAAAGAGAAGGTGTTATTTTGCTTTTATGC  800

seq1  AGTTTTTCTTCCTTGCTGGGGTATTATTTCTGTTTCTCCATATATTATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTCTTCCTTGCTGGGGTATTATTTCTGTTTCTCCATATATTATCA  850

seq1  TTTGTAGCCTTTTTCACAGCTGCTGGGGGTGACTGCTAATATCAGTAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGCCTTTTTCACAGCTGCTGGGGGTGACTGCTAATATCAGTAATT  900

seq1  TAGACAAGTGAAGTCAATGCTCCCTTTAAAGGAGAAAGATTTCTGTGAGC  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TAGACAAGTGAAGTCAATGCTCCCTTTAAA-GAGAAAGATTTCTGTGAGC  949

seq1  TAGTCTCTTTTTATGTCAGAATTAACCATTCAGAGCCCTCCTGCTCTCCC  1000
      ||||||||||||||||||||| ||| |||||| |||||| ||||||| ||
seq2  TAGTCTCTTTTTATGTCAGAA-TAAACATTCAAAGCCCTTCTGCTCT-CC  997

seq1  TCTGCTCACAACAAGTTAGCATATTGTTCCCAGTGCATTAGGAACTGAAC  1050
      ||||||  |||| || |||||||||| |||  |||||||||| |||| ||
seq2  TCTGCT--CAACCAGGTAGCATATTGGTCCAGGTGCATTAGG-ACTG-AC  1043

seq1  TTTTTCAGAGTCAGGAGTCTTGCAGCTATGCTGTGTAACATTATCTTCTA  1100
      |||||| |||||| ||||||||||||||||| |||||||| |||||||||
seq2  TTTTTC-GAGTCA-GAGTCTTGCAGCTATGC-GTGTAACA-TATCTTCTA  1089

seq1  TCTTGTTCCGACTCGAGGCAGGGGTTGGG  1129
      || |||| ||  || ||||||||||||||
seq2  TC-TGTTTCGGATCTAGGCAGGGGTTGGG  1117