BAC Information

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BAC

Clone NameB6Ng01-080G18
Chromosome5 (Build37)
Map Location 16,732,302 - 16,897,878
singlet/doubletdoublet
Overlap geneLOC626390, LOC668142, LOC100041749, LOC100041832
Upstream geneCacna2d1, LOC668121, Hgf, EG668131
Downstream geneSpeer4f, EG630927, Sema3c, Cd36, Gnat3, Gnai1, LOC100041818
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080G18.bB6Ng01-080G18.g
ACCDH895566DH895567
length1,183738
definitionDH895566|Mus musculus domesticus DNA, BAC clone: B6Ng01-080G18, 5' end.DH895567|Mus musculus domesticus DNA, BAC clone: B6Ng01-080G18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,896,689 - 16,897,878)(16,732,302 - 16,733,037)
sequence
gaattctttggtcctggtgcgagccctccttgacacccaaggcactgtga
aagtgggtcagaggtaccgctggcttattatgtgtttttgtttatgcttt
ataaaaacaccacttaccaataattctttacagtgggattcagcatcact
agctgtattctccatagcttttactcacaaataaaggtttagtggggaac
attttgttaaaagctacaaagataccagccatgcaaaaatttttgcaagg
tttatgatataaatgataaagtgacccacatggcatcttattatattgga
ctgttagatactgagaaaattcacagaactgatttcaacagcagtttcag
ttattttcttcatagtaaagcttttttatgactctacagtgcttctaaga
ttataagaaaattatgctttattttacattacaatgagttttagggtcaa
acttgatgatgaaaatcttatatttcacagtcatcaagtaaaaacagaat
gtgtttcatcatgttttctagtaatattttatctgattaaatagttctaa
taaaaataaagccatcaccctctgtgaaaatgagttttggacttgcatct
ttattctctttcatgtggtttcctttagtactgagtgcaaaaataaggga
agtaaaatatataaacagttactagttattttatctttccaacaaaattg
tacactcacaacttattataaactaacagaagatggtttacaaaaactga
aatttctgctttattttttctattctttctcaccattaaaacatgcattt
ttgacacgttgactgaacagatgtaatgagaaatatgcttttaagaatac
attccagtgttccccatttattttatattttaatcgtacttatgatgtaa
agtcacttttaaatattttagattaactaaatgttttcagatccttatca
tgacatcatattttaatgtgactaattttcaaataacttagaatgtacaa
aatgggtaatcacttatagacttacttcatttatttataaggaattttga
agatagccaagaaatctcaaataaatatttattctttgcttctttcattc
atccatttaaaaattcattcatcaaactatatcaaaatttattaaataac
ctgtggctaagttatgttctaaaggcactgatt
gaattcttcactcagaccacaagttcaacatttcaggaagcagaacagtc
catttcccatctaactcctgaccaagattcaggttctacttctcctcaaa
gaagcatttagtgacatgaggttgggcacagggtgttctggaggcacagc
gtcctagaatctaccatcttaaaaggatgagggtaacattgcagacccta
gactgacaccacagggtttgtgagaaatgcatacctcttgttcatggatc
tgtccgtgacatatagcaggcgatctctcggctcatttctcttctgtgta
atgagctgcagctctgtggtcagcctttcctcttcatttttggcctgcct
cttgcttaagacagttgcaggtgatgatgtctgtctgccagcctctgtag
gtacaagaacacaagtgacttgcatagtgagaattgatagagtgtagaca
gaacacccctgaggtcccaacagaaggagaacatgcctggaacccagtga
cactaagagtttggttccagtttgagatgcctcctcagtgaatctcagct
ctcccatcactctatagagaacaggagatgtaagtagccaggtgtttcct
gtcccctacacatgctttatgatgaccttagtgatggcttctccaggatt
attgtcaactgcacagggtaaaacatggcttcatagccccagtcctatgg
tttttagaagtcagatgataaattaacccttcagaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_16896689_16897878
seq2: B6Ng01-080G18.b_45_1227 (reverse)

seq1  AATCAAGGTGCTTTTAGAAACATAACTTAGCCACAGTTTATTTAATAAAT  50
      |||||  |||| ||||| |||||||||||||||||| |||||||||||||
seq2  AATCA--GTGCCTTTAG-AACATAACTTAGCCACAGGTTATTTAATAAAT  47

seq1  ATTTGATATAGGTTTGATGAATGAATTTTTTAAATGGATGAATGAAAGAA  100
       ||||||||| |||||||||||||| ||||||||||||||||||||||||
seq2  -TTTGATATA-GTTTGATGAATGAA-TTTTTAAATGGATGAATGAAAGAA  94

seq1  GCAAAGAATAAATATTTATTTGAGAATTCTTGGCTTATCTTCAAAATT-C  149
      ||||||||||||||||||||||||| |||||||| ||||||||||||| |
seq2  GCAAAGAATAAATATTTATTTGAGATTTCTTGGC-TATCTTCAAAATTCC  143

seq1  TTATAAATAAATGAAGTAAGTCTATAAGTGA-TACCCATTTTGTACATTC  198
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTATAAATAAATGAAGTAAGTCTATAAGTGATTACCCATTTTGTACATTC  193

seq1  TAAGTTATTTGAAAATTAAGTCACATTAAAATATGATGTCATGATAAGGA  248
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAAGTTATTTGAAAATT-AGTCACATTAAAATATGATGTCATGATAAGGA  242

seq1  TCTGAAAACATTTAGTTAATCTAAAATATTTAAAAGTGACTTTACATCAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAACATTTAGTTAATCTAAAATATTTAAAAGTGACTTTACATCAT  292

seq1  AAGTACGATTAAAAATATAAAATAAATGGGGAACACTGGAATGTATTCTT  348
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAGTACGATT-AAAATATAAAATAAATGGGGAACACTGGAATGTATTCTT  341

seq1  AAAAGCATATTTCTCATTACATCTGTTCAGTCAACGTGTCAAAAATGCAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCATATTTCTCATTACATCTGTTCAGTCAACGTGTCAAAAATGCAT  391

seq1  GTTTTAATGGTGAGAAAGAATAGAAAAAATAAAGCAGAAATTTCAGTTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAATGGTGAGAAAGAATAGAAAAAATAAAGCAGAAATTTCAGTTTT  441

seq1  TGTAAACCATCTTCTGTTAGTTTATAATAAGTTGTGAGTGTACAATTTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACCATCTTCTGTTAGTTTATAATAAGTTGTGAGTGTACAATTTTG  491

seq1  TTGGAAAGATAAAATAACTAGTAACTGTTTATATATTTTACTTCCCTTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAGATAAAATAACTAGTAACTGTTTATATATTTTACTTCCCTTAT  541

seq1  TTTTGCACTCAGTACTAAAGGAAACCACATGAAAGAGAATAAAGATGCAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCACTCAGTACTAAAGGAAACCACATGAAAGAGAATAAAGATGCAA  591

seq1  GTCCAAAACTCATTTTCACAGAGGGTGATGGCTTTATTTTTATTAGAACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAAACTCATTTTCACAGAGGGTGATGGCTTTATTTTTATTAGAACT  641

seq1  ATTTAATCAGATAAAATATTACTAGAAAACATGATGAAACACATTCTGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATCAGATAAAATATTACTAGAAAACATGATGAAACACATTCTGTT  691

seq1  TTTACTTGATGACTGTGAAATATAAGATTTTCATCATCAAGTTTGACCCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTGATGACTGTGAAATATAAGATTTTCATCATCAAGTTTGACCCT  741

seq1  AAAACTCATTGTAATGTAAAATAAAGCATAATTTTCTTATAATCTTAGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCATTGTAATGTAAAATAAAGCATAATTTTCTTATAATCTTAGAA  791

seq1  GCACTGTAGAGTCATAAAAAAGCTTTACTATGAAGAAAATAACTGAAACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTAGAGTCATAAAAAAGCTTTACTATGAAGAAAATAACTGAAACT  841

seq1  GCTGTTGAAATCAGTTCTGTGAATTTTCTCAGTATCTAACAGTCCAATAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGAAATCAGTTCTGTGAATTTTCTCAGTATCTAACAGTCCAATAT  891

seq1  AATAAGATGCCATGTGGGTCACTTTATCATTTATATCATAAACCTTGCAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGATGCCATGTGGGTCACTTTATCATTTATATCATAAACCTTGCAA  941

seq1  AAATTTTTGCATGGCTGGTATCTTTGTAGCTTTTAACAAAATGTTCCCCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTGCATGGCTGGTATCTTTGTAGCTTTTAACAAAATGTTCCCCA  991

seq1  CTAAACCTTTATTTGTGAGTAAAAGCTATGGAGAATACAGCTAGTGATGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCTTTATTTGTGAGTAAAAGCTATGGAGAATACAGCTAGTGATGC  1041

seq1  TGAATCCCACTGTAAAGAATTATTGGTAAGTGGTGTTTTTATAAAGCATA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCCACTGTAAAGAATTATTGGTAAGTGGTGTTTTTATAAAGCATA  1091

seq1  AACAAAAACACATAATAAGCCAGCGGTACCTCTGACCCACTTTCACAGTG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACACATAATAAGCCAGCGGTACCTCTGACCCACTTTCACAGTG  1141

seq1  CCTTGGGTGTCAAGGAGGGCTCGCACCAGGACCAAAGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGTGTCAAGGAGGGCTCGCACCAGGACCAAAGAATTC  1183

seq1: chr5_16732302_16733037
seq2: B6Ng01-080G18.g_69_806

seq1  GAATTCTTCACTCAGACCACAAGTTCAACATTTCAGGAAGCAGAACAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACTCAGACCACAAGTTCAACATTTCAGGAAGCAGAACAGTC  50

seq1  CATTTCCCATCTAACTCCTGACCAAGATTCAGGTTCTACTTCTCCTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCCATCTAACTCCTGACCAAGATTCAGGTTCTACTTCTCCTCAAA  100

seq1  GAAGCATTTAGTGACATGAGGTTGGGCACAGGGTGTTCTGGAGGCACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATTTAGTGACATGAGGTTGGGCACAGGGTGTTCTGGAGGCACAGC  150

seq1  GTCCTAGAATCTACCATCTTAAAAGGATGAGGGTAACATTGCAGACCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAGAATCTACCATCTTAAAAGGATGAGGGTAACATTGCAGACCCTA  200

seq1  GACTGACACCACAGGGTTTGTGAGAAATGCATACCTCTTGTTCATGGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGACACCACAGGGTTTGTGAGAAATGCATACCTCTTGTTCATGGATC  250

seq1  TGTCCGTGACATATAGCAGGCGATCTCTCGGCTCATTTCTCTTCTGTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCGTGACATATAGCAGGCGATCTCTCGGCTCATTTCTCTTCTGTGTA  300

seq1  ATGAGCTGCAGCTCTGTGGTCAGCCTTTCCTCTTCATTTTTGGCCTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTGCAGCTCTGTGGTCAGCCTTTCCTCTTCATTTTTGGCCTGCCT  350

seq1  CTTGCTTAAGACAGTTGCAGGTGATGATGTCTGTCTGCCAGCCTCTGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTAAGACAGTTGCAGGTGATGATGTCTGTCTGCCAGCCTCTGTAG  400

seq1  GTACAAGAACACAAGTGACTTGCATAGTGAGAATTGATAGAGTGTAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGAACACAAGTGACTTGCATAGTGAGAATTGATAGAGTGTAGACA  450

seq1  GAACACCCCTGAGGTCCCAACAGAAGGAGAACATGCCTGGAACCCAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACCCCTGAGGTCCCAACAGAAGGAGAACATGCCTGGAACCCAGTGA  500

seq1  CACTAAGAGTTTGGTTCCAGTTTGAGATGCCTCCTCAGTGAATCTCAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGAGTTTGGTTCCAGTTTGAGATGCCTCCTCAGTGAATCTCAGCT  550

seq1  CTCCCATCACTCTATAGAGAACAGGAGATGTAAGTAGCCAGGTGTTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATCACTCTATAGAGAACAGGAGATGTAAGTAGCCAGGTGTTTCCT  600

seq1  GTCCCCTACACATGC-TTATGATGACCTTAGTGATGGCTTCTCCAGGATT  649
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTCCCCTACACATGCTTTATGATGACCTTAGTGATGGCTTCTCCAGGATT  650

seq1  ATTGTCAACTGCACAGGGTAAAACATGGCTTCATAGCCCCAGTCCTATGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCAACTGCACAGGGTAAAACATGGCTTCATAGCCCCAGTCCTATGG  700

seq1  -TTTTAGAAGTCAGATGATAAATTAACCATCCAGAAGT  736
       ||||||||||||||||||||||||||| | |||||||
seq2  TTTTTAGAAGTCAGATGATAAATTAACCCTTCAGAAGT  738