BAC Information

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BAC

Clone NameB6Ng01-080J24
Chromosome5 (Build37)
Map Location 95,174,906 - 95,176,069
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666081, EG665802, LOC100040408, LOC100040981, EG622719, LOC100041003, BC061212, EG622744, LOC100041032, LOC100041042, LOC624421, AA792892, LOC665521, LOC665551, LOC100041102, LOC665560, LOC100041115, LOC624507, LOC621203, LOC100041153
Downstream geneLOC665499, LOC624698, LOC100041179, LOC624655, LOC100041166, LOC665469, LOC622894, EG666121, LOC666125, EG666133, LOC100041296, LOC100041253, LOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080J24.bB6Ng01-080J24.g
ACCDH895709DH895710
length1,1441,134
definitionDH895709|Mus musculus domesticus DNA, BAC clone: B6Ng01-080J24, 5' end.DH895710|Mus musculus domesticus DNA, BAC clone: B6Ng01-080J24, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatttattgttgatcttttgcatgagtttatgggagttctgttc
aggaagtagtcaccttttacaataacaccaagagccctgacactattaat
gatattcttcaaccaggagcaagtaggagtggacgatattaaagtattta
cactattgcagttttgttcttctaatctgattgtgactgagcacctttct
tttctcttgaagtaagaaagtatttcatacccaagagccaccatgagcta
tagcctaaagaggaattttctcttactctgaactggggaccactgagcaa
gagtgagggagagggactgacattttttgtcaatagtttcctgaaggacc
aaggtctgctgccaggaaaggcagaagaatccaaagaactgaacatgtcg
aataaaatcaccctgaggcccagttgagctaaacaactttgatgatacat
gaggacattgcagcccatttcccactgcaagaaggatcagtacaagctca
gcttctgttagcttcatttctaatggatttcaatctagttatattttcaa
gtacaaattaatcatgtgcaagagctggggagagggtggtggtgtacaga
agcttctcaacctagcccttggtgagaacacacaaccacccgaggcacca
tttatactctgtgtcagtgctgccccctactggaaactgggttgatcttg
gtcacaggattggttcagagaattaaagaacctactacctgcactcccag
ccagtaaggatcattcttcaaaataacatgtattttctaagacagaaaaa
aaaatcacaatccattactaactgtattgtgagaacttagcagaacttaa
aaactaaattcattatcttacttagtgtttctattgctgcaataaaaaat
catgaccttgccgggcagtggtgtgcatgcctttcatcccagcactttga
gtcaaaggctggtggatttctgatgtcaagacagcttggtctacagagtg
agttcttgggacagtcagggctacacagaggaaaatttgtctctataaga
ccaaaaaatcatgacaaataaattgggggaagttattggcttcatcgaga
agggagcctcgaaaaccgcattacttatcaaggtgctatttttc
gaattcaaatagttccatatctatcaccatacagaacactgcagtccaag
tggaccaaaaacctcaacctaaacctagatatattaaatataattaaaaa
gtgggtaatagctttgaaaccattattacaggagccatcttcctgaaaga
tccaacatctcagtcgctaagatcaaaaagtaataaatgggacctcatga
aactaaaaaaaatctcctgtatggaaaaggagattttgtcaaggacaatg
gtcaaaaggacaaaacagtagcctagagattgggaaaagatctccaccaa
ccttccatctgaaagagggatgatatacaaattacctaaagaactaaaaa
aagtagacactaacaaaccaagtagcccaaatttttaaaatggggtagac
agctaaatagaattttcaacagaggaatatttaatgaccaagaagcactt
acagaaatgctcaacatccttagtcatcagggaaatccaaatcaaaaatg
actctggaatttcattttacaccctttagaagggcaacagttcatgctag
ctagagtgtggagcatggggaacactctctttctttgctggtaggagtac
aaacttgtacaaccagtctgaaaataaattcagtgctttctcaaataatt
ggaaataattctctcagaaatgattataccactcctggccatatattcaa
aagatgctgcatcataccacaagaatagtgttttaactatgtgcacagat
tttttttttttttttttttttttggaaaaagccagaaacttgaaacaact
caaatgtccctcaactgaagaatgggaaatgaatatatggtacatttaca
caacagaatactactcagctgttaaaaaacaatgacatcatgaaatttgc
aggctaaccgagactcagaaaggcaatgtgcatgtactcacgagtgatat
taaccataaaagtacaggaaaacctgttaacaaagacttaaggaactaag
aagaaagcccgcaagagatatttggatgttactaagaacataaattagta
aattcaggtgaattgatgaggaacttgggaagcaatcctgaatgtaacga
gtgtcccattggtgaaatagggtatgagaaaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_95174906_95176069
seq2: B6Ng01-080J24.b_48_1191

seq1  GAATTCCATTTATTGTTGATCTTTTGCATGAG-CTATGGGAGTTCTGTTC  49
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  GAATTCCATTTATTGTTGATCTTTTGCATGAGTTTATGGGAGTTCTGTTC  50

seq1  AGGAAGTAGTCACCTTTTACAATAACACCAAGAGCCCTGACACTATTAAT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTAGTCACCTTTTACAATAACACCAAGAGCCCTGACACTATTAAT  100

seq1  GATATTCTTCAACCAGGAGCAAGTAGGAGTGGACGATATTAAAGTATTTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCTTCAACCAGGAGCAAGTAGGAGTGGACGATATTAAAGTATTTA  150

seq1  CACTATTGCAGTTTTGTTCTTCTAATCTGATTGTGACTGAGCACCTTTCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTGCAGTTTTGTTCTTCTAATCTGATTGTGACTGAGCACCTTTCT  200

seq1  TTTCTCTTGAAGTAAGAAAGTATTTCATACCCAAGAGCCACCATGAGCTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTGAAGTAAGAAAGTATTTCATACCCAAGAGCCACCATGAGCTA  250

seq1  TAGCCTAAAGAGGAATTTTCTCTTACTCTGAACTGGGGACCACTGAGCAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTAAAGAGGAATTTTCTCTTACTCTGAACTGGGGACCACTGAGCAA  300

seq1  GAGTGAGGGAGAGGGACTGACATTTTTTGTCAATAGTTTCCTGAAGGACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGGGAGAGGGACTGACATTTTTTGTCAATAGTTTCCTGAAGGACC  350

seq1  AAGGTCTGCTGCCAGGAAAGGCAGAAGAATCCAAAGAACTGAACATGTCG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTGCTGCCAGGAAAGGCAGAAGAATCCAAAGAACTGAACATGTCG  400

seq1  AATAAAATCACCCTGAGGCCCAGTTGAGCTAAACAACTTTGATGATACAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATCACCCTGAGGCCCAGTTGAGCTAAACAACTTTGATGATACAT  450

seq1  GAGGACATTGCAGCCCATTTCCCACTGCAAGAAGGATCAGTACAAGCTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACATTGCAGCCCATTTCCCACTGCAAGAAGGATCAGTACAAGCTCA  500

seq1  GCTTCTGTTAGCTTCATTTCTAATGGATTTCAATCTAGTTATATTTTCAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGTTAGCTTCATTTCTAATGGATTTCAATCTAGTTATATTTTCAA  550

seq1  GTACAAATTAATCATGTGCAAGAGCTGGGGAGAGGGTGGTGGTGTACAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAATTAATCATGTGCAAGAGCTGGGGAGAGGGTGGTGGTGTACAGA  600

seq1  AGCTTCTCAACCTAGCCCTTGGTGAGAACACACAACCACCCGAGGCACCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTCAACCTAGCCCTTGGTGAGAACACACAACCACCCGAGGCACCA  650

seq1  TTTATACTCTGTGTCAGTGCTGCCCCCTACTGGAAACTGGGTTGATCTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACTCTGTGTCAGTGCTGCCCCCTACTGGAAACTGGGTTGATCTTG  700

seq1  GTCACAGGATTGGTTCAGAGAATTAAAGAACCTACTACCTGCACTCCCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGGATTGGTTCAGAGAATTAAAGAACCTACTACCTGCACTCCCAG  750

seq1  CCAGTAAGGATCATTCTTCAAAATAACATGTATTTTCTAAGACAGAAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAAGGATCATTCTTCAAAATAACATGTATTTTCTAAGACAGAAAAA  800

seq1  AAAATCACAATCCATTACTAACTGTATTGTGAGAACTTAGCAGAACTTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCACAATCCATTACTAACTGTATTGTGAGAACTTAGCAGAACTTAA  850

seq1  AAACTAAATTCATTATCTTACTTAGTGTTTCTATTGCTGCAATAAAAAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAATTCATTATCTTACTTAGTGTTTCTATTGCTGCAATAAAAAAT  900

seq1  CATGACCTTGCCGGGCAGTGGTGGTGCATGCCTTTCATCCCAGCACTTTG  949
      |||||||||||||||||||||| |||||||||||||||||||||||||| 
seq2  CATGACCTTGCCGGGCAGTGGT-GTGCATGCCTTTCATCCCAGCACTTT-  948

seq1  GAGTCAAAGGCTGGTGGATTTCTGATGTCAAGACCAGCCTGGTCTACAGA  999
      ||||||||||||||||||||||||||||||||| |||| |||||||||||
seq2  GAGTCAAAGGCTGGTGGATTTCTGATGTCAAGA-CAGCTTGGTCTACAGA  997

seq1  GTGAGTTC-TGGGACAGCCAGGGCTACACAGA-GAAAATATGTCTCTATA  1047
      |||||||| |||||||| |||||||||||||| |||||| ||||||||||
seq2  GTGAGTTCTTGGGACAGTCAGGGCTACACAGAGGAAAATTTGTCTCTATA  1047

seq1  AGGACCAAAAAAAAAAATCATGACCAAAATAAAATTGGGGAAATTTATTT  1097
      | ||||     |||||||||||||  |||| ||||||||| || ||| ||
seq2  A-GACC-----AAAAAATCATGAC--AAAT-AAATTGGGGGAAGTTA-TT  1087

seq1  GGCTTCCCATCAGAGAAGGGGAGCCCTCAGACAAACACGCATTAACTTAT  1147
      |||||  |||| ||||| ||||| |||| || |||| |||||| ||||||
seq2  GGCTT--CATC-GAGAA-GGGAG-CCTC-GA-AAAC-CGCATT-ACTTAT  1128

seq1  CAAGGTGCTTATTTTTC  1164
      |||||||| ||||||||
seq2  CAAGGTGC-TATTTTTC  1144