BAC Information

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BAC

Clone NameB6Ng01-081B02
Chromosome5 (Build37)16 (Build37)
Map Location 67,668,432 - 67,669,32541,616,674 - 41,617,188
singlet/doubletsingletsinglet
Overlap geneTmem33
Upstream geneNsun7, Apbb2, Uchl1, LOC100041876, 3732412D22Rik, LOC624662, Phox2b
Downstream geneSlc30a9, EG666938, C330024D21Rik, D830007B15Rik, Atp8a1, LOC100042458, EG330097, EG666977, AY616753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081B02.bB6Ng01-081B02.g
ACCDH896023DH896024
length895880
definitionDH896023|Mus musculus domesticus DNA, BAC clone: B6Ng01-081B02, 5' end.DH896024|Mus musculus domesticus DNA, BAC clone: B6Ng01-081B02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(67,668,432 - 67,669,325)(41,616,674 - 41,617,188)
sequence
gaattcatgatggagcaaagaaagactcctgcacaatattttaaataagg
ttactggtgtgttggacctgagctttggcctcacaggctccaggttggac
acacttctctgctaacatagtgttttacgatgcattttagtcttggttct
ttctgtcttctctgtcccagagtaagcagtttaatgggtttgcatgtgta
ggccatttagaaaagtacatgtctgtaggaagtacactttgcctggtgta
gctttgtttgtttattgtttttactgtgcattatagttatcataattatt
tgtagcttgtttttcagtcaggatgtattttgtggtctgtttgtgtcgat
atctagagttagcatttgtttctttaaaaggttgtacattgtcacctttg
ggttagtatcttattaccctggcgatgggtggtgggtcacagttttagtt
tcccacatagtggtgcagtaaacaccgttcttagcttgcttagatgtgtg
tgccaacagtgctttcttcaacacagatatcaggattaatttttctacct
ttaagcttaatgtattttgtatttaatagaaccacatccaatgttcctta
aaatatcagtgtgcctgttcaggcctgtaatcccagcattgggcaggcta
aggcaggaggttcaagttcaaggccagcttaggctgcacagtaagattct
tgtctaggaaaaagaaatctgtttacttgtttttcataattttgctcatt
tgtacaagttattgttaccaagtataaaactttatactttttaagtgttt
gttcactgaccaatgagggagccagccttcctccctccctccctccgtcc
gtcccttccttccttccttccttccttccttccttcctcccttcc
gaattctctggtccgtgatgtcggaaattatctgacctagtaaggtggat
ggggagcagcctgtcaggtctaggagcgacatgggaagtccccgaagctg
cagctcacaatccctcaactgcacaggtcttggccgtgtgtggtatttga
ccagtgtgctgagcgtagaagcacatcagctgtggttaagtagggacatg
gttgtggcttccactttgcagtaagtgtctgacatgaccactacagaagt
gcaggattgaacgagccttatttcacgagccagattaaatcaaaagctaa
agtttcatgtcccaggaaatcaaagggggttttatttttgctctcaagat
tcaaaattttaaccaattttttttttctttttttttttttttccattttt
tattaggtatttaactcatttacatttccaatgctataccaaaagtcccc
catatccacccacccccactcccctgcccacccactccccctttttggcc
ctggtattcccctgtactggggcatataaagtttgcaagtccaatgggcc
tctctttccagtgatggccgactaggccatcttttgatatatatgcagct
agagtcaagagctccggggtactggttagctcataatgttgttccaccta
tagggttgcagatccctttagctccttggctactttctctagctcctcca
tttgggagccctatgatccatccatagctgactgtgagcatccacttctt
gtgtttgctgggccccggcatagtcttacaagagacagctacaatctggg
tcctttcaataaaatcttgctagtgtattgcatggttgtcagcgtttgga
atgctgattatggggtggatccctggccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_67668432_67669325
seq2: B6Ng01-081B02.b_45_939

seq1  GAATTCATGATGGAGCAAAGAAAGACTCCTGCACAATATTTTAAATAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGATGGAGCAAAGAAAGACTCCTGCACAATATTTTAAATAAGG  50

seq1  TTACTGGTGTGTTGGACCTGAGCTTTGGCCTCACAGGCTCCAGGTTGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGTGTGTTGGACCTGAGCTTTGGCCTCACAGGCTCCAGGTTGGAC  100

seq1  ACACTTCTCTGCTAACATAGTGTTTTACGATGCATTTTAGTCTTGGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCTCTGCTAACATAGTGTTTTACGATGCATTTTAGTCTTGGTTCT  150

seq1  TTCTGTCTTCTCTGTCCCAGAGTAAGCAGTTTAATGGGTTTGCATGTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTTCTCTGTCCCAGAGTAAGCAGTTTAATGGGTTTGCATGTGTA  200

seq1  GGCCATTTAGAAAAGTACATGTCTGTAGGAAGTACACTTTGCCTGGTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTTAGAAAAGTACATGTCTGTAGGAAGTACACTTTGCCTGGTGTA  250

seq1  GCTTTGTTTGTTTATTGTTTTTACTGTGCATTATAGTTATCATAATTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTTTGTTTATTGTTTTTACTGTGCATTATAGTTATCATAATTATT  300

seq1  TGTAGCTTGTTTTTCAGTCAGGATGTATTTTGTGGTCTGTTTGTGTCGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTTGTTTTTCAGTCAGGATGTATTTTGTGGTCTGTTTGTGTCGAT  350

seq1  ATCTAGAGTTAGCATTTGTTTCTTTAAAAGGTTGTACATTGTCACCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAGTTAGCATTTGTTTCTTTAAAAGGTTGTACATTGTCACCTTTG  400

seq1  GGTTAGTATCTTATTACCCTGGCGATGGGTGGTGGGTCACAGTTTTAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTATCTTATTACCCTGGCGATGGGTGGTGGGTCACAGTTTTAGTT  450

seq1  TCCCACATAGTGGTGCAGTAAACACCGTTCTTAGCTTGCTTAGATGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACATAGTGGTGCAGTAAACACCGTTCTTAGCTTGCTTAGATGTGTG  500

seq1  TGCCAACAGTGCTTTCTTCAACACAGATATCAGGATTAATTTTTCTACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACAGTGCTTTCTTCAACACAGATATCAGGATTAATTTTTCTACCT  550

seq1  TTAAGCTTAATGTATTTTGTATTTAATAGAACCACATCCAATGTTCCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTTAATGTATTTTGTATTTAATAGAACCACATCCAATGTTCCTTA  600

seq1  AAATATCAGTGTGCCTGTTCAGGCCTGTAATCCCAGCATTGGGCAGGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCAGTGTGCCTGTTCAGGCCTGTAATCCCAGCATTGGGCAGGCTA  650

seq1  AGGCAGGAGGTTCAAGTTCAAGGCCAGCTTAGGCTGCACAGTAAGATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAGGTTCAAGTTCAAGGCCAGCTTAGGCTGCACAGTAAGATTCT  700

seq1  TGTCTAGG-AAAAGAAATCTGTTTACTTGTTTTTCATAATTTTGCTCATT  749
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGGAAAAAGAAATCTGTTTACTTGTTTTTCATAATTTTGCTCATT  750

seq1  TGTACAAGTTATTGTTACCAAGTATAAAACTTTATACTTTTTAAGTGTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAAGTTATTGTTACCAAGTATAAAACTTTATACTTTTTAAGTGTTT  800

seq1  GTTCACTGACCAATGAGGGAGCCAGCCTTCCTCCCTCCCTCCCTCCGTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTGACCAATGAGGGAGCCAGCCTTCCTCCCTCCCTCCCTCCGTCC  850

seq1  GTCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTCCCTTCC  894
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTCCCTTCC  895

seq1: chr16_41616674_41617188
seq2: B6Ng01-081B02.g_422_949

seq1  --------AA--AATTTTTTTTTTCTTTTCTTTTTTTTTTTCCAATTTTT  40
              ||  ||||||||||||||||| |||||||||||||| |||||
seq2  AAAATTTTAACCAATTTTTTTTTTCTTTT-TTTTTTTTTTTCCATTTTTT  49

seq1  ATTAGGTATTTAACTCATTTACATTTCCAATGCTATACCAAAAGTCCCCC  90
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTATTTAACTCATTTACATTTCCAATGCTATACCAAAAGTCCCCC  99

seq1  ATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCC  140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCC  149

seq1  TGGTATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCT  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCT  199

seq1  CTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTA  249

seq1  GAGTCAAGAGCTCCGGGGTACTGGTTAGCTCATAATGTTGTTCCACCTAT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAAGAGCTCCGGGGTACTGGTTAGCTCATAATGTTGTTCCACCTAT  299

seq1  AGGGTTGCAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCA-  339
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGGGTTGCAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCAT  349

seq1  TTGGGAGCCCTATGATCCATCCATTAGCTGACTGTGAGCATCCACTTC-T  388
      ||||||||||||||||||||||| |||||||||||||||||||||||| |
seq2  TTGGGAGCCCTATGATCCATCCA-TAGCTGACTGTGAGCATCCACTTCTT  398

seq1  GTGTTTGCTGGGCCCCGGCATAGTCTCACAAGAGACAGCTAC-ATCTGCG  437
      |||||||||||||||||||||||||| ||||||||||||||| ||||| |
seq2  GTGTTTGCTGGGCCCCGGCATAGTCTTACAAGAGACAGCTACAATCTGGG  448

seq1  TCCTTTCAATAAAATCTTGCTAGTGTA-TGCAATGGTGTCAGCGTTTGG-  485
      ||||||||||||||||||||||||||| ||||  | ||||||||||||| 
seq2  TCCTTTCAATAAAATCTTGCTAGTGTATTGCATGGTTGTCAGCGTTTGGA  498

seq1  ATGCTGATTATGGGGTGGATCCCTGGCTAT  515
      ||||||||||||||||||||||||||| ||
seq2  ATGCTGATTATGGGGTGGATCCCTGGCCAT  528