BAC Information

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BAC

Clone NameB6Ng01-081I11
Chromosome5 (Build37)
Map Location 12,496,666 - 12,497,695
singlet/doubletsinglet
Overlap geneSema3d
Upstream geneLOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144, LOC100041626, EG668059, LOC668015
Downstream geneLOC100042917, LOC668069, LOC433845, LOC625989, LOC670717, Sema3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081I11.bB6Ng01-081I11.g
ACCDH896356DH896357
length2431,019
definitionDH896356|Mus musculus domesticus DNA, BAC clone: B6Ng01-081I11, 5' end.DH896357|Mus musculus domesticus DNA, BAC clone: B6Ng01-081I11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tcaactgaggaatatcaaatgattgagaagcacttcaagaaatgatcaac
atccttagtcatcagggaaatgccaataaaaataaccctgagatcctacc
cctcaccagtcttaatcactaacatcaaaaactcaggtgacagcagatgc
tggctaggctgtggagaaagaggaacactcctccattgttggtggggttt
caagctggtacaaccaccatggaaatcagtctggggttcctca
gaattcctggctgtccttggctaacactgaggaattatctcttataattt
acaaaaagaaattgcttccaaccatttagtagagataaatattcacttgt
agtaggtaaacttaatgtaatctataatgaagtgaatggatattctaaaa
aaccacagaattgctgcttactagtaattgtaataaatttatacaaaata
attataaagatagtgaaaggtaaagaaaattttagatttaaccacatgtg
aaataagaaggtgagttttcaatatttagctgacataaaaatgttcatgt
gaaaagtggaagaacggtgtgtaggaaatagtctgatctgaaagacttcc
tggtatctaaaaacaaaggggactctaagatagagaagcagatgcacgct
gtatgtgttggtccagtgttttgattggtggagcttggacagcaggtgtt
atagactgtagggccttcaggctcagattatgtgttcatattagagtaag
agagacactgtgcaatgttgtaacttgtgtggttcccagactgtatatac
ccaggtacactgtgcctcatttaatacaactctagagttttgtgtcctaa
catcttaattagctacacaagtataacttcaagaagttttcaaatcaccc
ctttaaccactgtgtcttttcgtgcttttttaagtcaagtgttcaaagtt
ttttttttataaatctaatgttttttcttattccagataattgatttatc
ctcaaaacaggaatatgaatgattaactttttgccatataataatgcgtt
ttaatttttgtacctattaggcagaatgtgcatatttcatccgtgtgctc
accccttataataagactcaacttttactgtgtggaacgggagcggttca
tccgctgtggtgggtacattgatccggcgctaacaaggatgtaaggaaca
atagagatataattatgcactacttatcacataaggctatacacaaaata
agacttgaaataagagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12496666_12497695
seq2: B6Ng01-081I11.g_70_1088

seq1  GAATTCCTGGCTGTCCTTGGCTAACACTGAGGAATTATCTCTTATAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGCTGTCCTTGGCTAACACTGAGGAATTATCTCTTATAATTT  50

seq1  ACAAAAAGAAATTGCTTCCAACCATTTAGTAGAGATAAATATTCACTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAGAAATTGCTTCCAACCATTTAGTAGAGATAAATATTCACTTGT  100

seq1  AGTAGGTAAACTTAATGTAATCTATAATGAAGTGAATGGATATTCTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTAAACTTAATGTAATCTATAATGAAGTGAATGGATATTCTAAAA  150

seq1  AACCACAGAATTGCTGCTTACTAGTAATTGTAATAAATTTATACAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAGAATTGCTGCTTACTAGTAATTGTAATAAATTTATACAAAATA  200

seq1  ATTATAAAGATAGTGAAAGGTAAAGAAAATTTTAGATTTAACCACATGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAAGATAGTGAAAGGTAAAGAAAATTTTAGATTTAACCACATGTG  250

seq1  AAATAAGAAGGTGAGTTTTCAATATTTAGCTGACATAAAAATGTTCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGAAGGTGAGTTTTCAATATTTAGCTGACATAAAAATGTTCATGT  300

seq1  GAAAAGTGGAAGAACGGTGTGTAGGAAATAGTCTGATCTGAAAGACTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTGGAAGAACGGTGTGTAGGAAATAGTCTGATCTGAAAGACTTCC  350

seq1  TGGTATCTAAAAACAAAGGGGACTCTAAGATAGAGAAGCAGATGCACGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATCTAAAAACAAAGGGGACTCTAAGATAGAGAAGCAGATGCACGCT  400

seq1  GTATGTGTTGGTCCAGTGTTTTGATTGGTGGAGCTTGGACAGCAGGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTTGGTCCAGTGTTTTGATTGGTGGAGCTTGGACAGCAGGTGTT  450

seq1  ATAGACTGTAGGGCCTTCAGGCTCAGATTATGTGTTCATATTAGAGTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTGTAGGGCCTTCAGGCTCAGATTATGTGTTCATATTAGAGTAAG  500

seq1  AGAGACACTGTGCAATGTTGTAACTTGTGTGGTTCCCAGACTGTATATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGTGCAATGTTGTAACTTGTGTGGTTCCCAGACTGTATATAC  550

seq1  CCAGGTACACTGTGCCTCATTTAATACAACTCTAGAGTTTTGTGTCCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTACACTGTGCCTCATTTAATACAACTCTAGAGTTTTGTGTCCTAA  600

seq1  CATCTTAATTAGCTACACAAGTATAACTTCAAGAAGTTTTCAAATCACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTAATTAGCTACACAAGTATAACTTCAAGAAGTTTTCAAATCACCC  650

seq1  CTTTAACCACTGTGTCTTTTCGTGC-TTTTTAAGTCAAGTGTTCAAAGTT  699
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTTTAACCACTGTGTCTTTTCGTGCTTTTTTAAGTCAAGTGTTCAAAGTT  700

seq1  TTTTTTTTTAATAAATCTAATGTTTTTTTCTTATTCCAGATAATTGATTT  749
      ||||||||  |||||||||||| |||||||||||||||||||||||||||
seq2  TTTTTTTT--ATAAATCTAATG-TTTTTTCTTATTCCAGATAATTGATTT  747

seq1  ATCCTCAAAACAAGGAATATGAATGATTAACTTTTTGCCATATAATAATG  799
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAAAAC-AGGAATATGAATGATTAACTTTTTGCCATATAATAATG  796

seq1  CG-TTTCATTTTTGTATCCTA-TAGGCAGAATGTGCAAATTTCATCCGTG  847
      || ||| ||||||||| |||| ||||||||||||||| ||||||||||||
seq2  CGTTTTAATTTTTGTA-CCTATTAGGCAGAATGTGCATATTTCATCCGTG  845

seq1  TGCTTCAACCC-TATAATAAGACTC-ACGTTTACGTGTGTGGAACTGGAG  895
      ||| ||| ||| ||||||||||||| || ||||| |||||||||| ||||
seq2  TGC-TCACCCCTTATAATAAGACTCAACTTTTAC-TGTGTGGAACGGGAG  893

seq1  CGTTTCATCCGCTGT-GTGGGTACATTGATCTCGGCGCCAACAAGGAGGT  944
      || |||||||||||| ||||||||||||||| |||||| |||||||| ||
seq2  CGGTTCATCCGCTGTGGTGGGTACATTGATC-CGGCGCTAACAAGGATGT  942

seq1  AAGGAAACAATAGAAAATATAATTACTGCACTACCTTATCACATAAGGCC  994
      |||| |||||||| | ||||||||| ||||||| |||||||||||||| |
seq2  AAGG-AACAATAG-AGATATAATTA-TGCACTA-CTTATCACATAAGG-C  987

seq1  TATACCACAAAATATAGACATTTGAATATAGAGAAA  1030
      |||| ||||||||| ||||  |||||   |||||||
seq2  TATA-CACAAAATA-AGAC--TTGAAATAAGAGAAA  1019