BAC Information

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BAC

Clone NameB6Ng01-081K07
Chromosome5 (Build37)
Map Location 23,145,055 - 23,331,276
singlet/doubletdoublet
Overlap genePus7, Rint1
Upstream geneLOC671222, LOC625174, Lhfpl3, EG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254, Srpk2
Downstream gene4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081K07.bB6Ng01-081K07.g
ACCDH896434DH896435
length634707
definitionDH896434|Mus musculus domesticus DNA, BAC clone: B6Ng01-081K07, 5' end.DH896435|Mus musculus domesticus DNA, BAC clone: B6Ng01-081K07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,330,725 - 23,331,276)(23,145,055 - 23,145,761)
sequence
gaattcattatccttttttctttctttctctttctttctttctttctttc
tttctttctttctttctttctttctttctttctttctttctttctttctt
tctttttttttaaagtgaggaccagaggtgactgtcccttcccgaacact
gtccaactctgtggttttgttttgttttgggttttgttttgtttttaatt
atttatttaatgtatatgagtacactataactgtcttcagacacactaga
atagggcatcaggtcccattacagatggttgtgagccaccatgtggctgc
tgggaattgaactcaggacctctagaaaagcagtcagtgctcttaatcac
tgaaccatctctccagcccctcattatcctttttaaggtttgtttattta
tgtgtatgtctgactaagtatgtgccatatgtgaggccgcaggagggcat
taaatccctcagtactggagttacaggctgttatgagccgtgtgagggag
gtgctgggaatagaactcaggtcttttaccaaaaaaagtattaaagtgct
attaacaactctcctgccccaatatcctttcattttttcaaaacaataac
ttaaaactgaatgttttttaaatgcaggcatgga
gaattctctggaagtggaagagcaaagttcagtcatatctggtccacaca
gtcacatatctggtccacacagtcacatatctggtccacacagtcacata
tctggtccacacagtcacatatctggtccacacagccacatatctggtcc
acacaaccacatatctggtccacacagccacatatctggtccacacagcc
acatatctggtccacacagccacatatctggtccacacagccacatatct
ggtccacacagccacatatctggtccacacagtcacatatctggttcaca
cagccacatatctggtccacacagtcacatatctggttcacacagtcaca
acagtaaaatgatgaagcaaagcatcctccacaataacgaacggagggct
ctggaccaggacacacagggctgatttacgtggccccaccctccagtaat
gcttgcattaagggaagctgtcatcaacctacttgcaaaccccaacattc
catttctcagaaagtaaatttacttgagactgatctagtccaattccaat
aaattctagaatacaatgaaaactataaacaaatttgtaaaataatcact
tcaagccacaagcaagaggcatccttcaaaaatgaaatacaacaaagaga
aacctttacgcatgaatcaaattaaaattaatctgtatgatatatgtggg
ggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_23330725_23331276
seq2: B6Ng01-081K07.b_126_677 (reverse)

seq1  TCCATGCCTGCATTTAAAAAACATTCAGTTTTAAGTTATTGTTTTGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCCTGCATTTAAAAAACATTCAGTTTTAAGTTATTGTTTTGAAAA  50

seq1  AATGAAAGGATATTGGGGCAGGAGAGCTGTTAATAGCACTTTAATACTTT  100
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AATGAAAGGATATTGGGGCAGGAGAGTTGTTAATAGCACTTTAATACTTT  100

seq1  TTTTGGTAAAAGACCTGAGTTCTATTCCCAGCACCTACCTCACACGGCTC  150
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTTGGTAAAAGACCTGAGTTCTATTCCCAGCACCTCCCTCACACGGCTC  150

seq1  ATAACAGCCTGTAACTCCAGTACTGAGGGATTTAATGCCCTCCTGCGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGCCTGTAACTCCAGTACTGAGGGATTTAATGCCCTCCTGCGGCC  200

seq1  TCACATATGGCACATACTTAGTCAGACATACACATAAATAAACAAACCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATATGGCACATACTTAGTCAGACATACACATAAATAAACAAACCTT  250

seq1  AAAAAGGATAATGAGGGGCTGGAGAGATGGCTCAGTGATTAAGAGCACTG  300
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAAAAGGATAATGAGGGGCTGGAGAGATGGTTCAGTGATTAAGAGCACTG  300

seq1  ACTGCTCTTCTAGAGGTCCTGAGTTCAATTCCCAGCAGCCACATGGTGGC  350
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTTTCTAGAGGTCCTGAGTTCAATTCCCAGCAGCCACATGGTGGC  350

seq1  TCACAACCATCTGTAATGGGACCTGATGCCCTATTCTAGTGTGTCTGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACCATCTGTAATGGGACCTGATGCCCTATTCTAGTGTGTCTGAAG  400

seq1  ACAGTTATAGTGTACTCATATACATTAAATAAATAATTAAAAACAAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTATAGTGTACTCATATACATTAAATAAATAATTAAAAACAAAACA  450

seq1  AAACCCAAAACAAAACAAAACCACAGAGTTGGACAGTGTTCGGGAAGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAAAACAAAACAAAACCACAGAGTTGGACAGTGTTCGGGAAGGGA  500

seq1  CAGTCACCTCTGGTCCTCACTTTAAAAAAAAAGAAAGAAAGAAAGAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACCTCTGGTCCTCACTTTAAAAAAAAAGAAAGAAAGAAAGAAAGA  550

seq1  AA  552
      ||
seq2  AA  552

seq1: chr5_23145055_23145761
seq2: B6Ng01-081K07.g_72_778

seq1  GAATTCTCTGGATGTGGAAGAGCAAAGTTCAGTCATATCTGGTCCACACA  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGAAGTGGAAGAGCAAAGTTCAGTCATATCTGGTCCACACA  50

seq1  GTCACATATCTGGTCCACACAGTCACATATCTGGTCCACACAGTCACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATATCTGGTCCACACAGTCACATATCTGGTCCACACAGTCACATA  100

seq1  TCTGGTCCACACAGTCACATATCTGGTCCACACAGCCACATATCTGGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCCACACAGTCACATATCTGGTCCACACAGCCACATATCTGGTCC  150

seq1  ACACAACCACATATCTGGTCCACACAGCCACATATCTGGTCCACACAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACCACATATCTGGTCCACACAGCCACATATCTGGTCCACACAGCC  200

seq1  ACATATCTGGTCCACACAGCCACATATCTGGTCCACACAGCCACATATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCTGGTCCACACAGCCACATATCTGGTCCACACAGCCACATATCT  250

seq1  GGTCCACACAGCCACATATCTGGTCCACACAGTCACATATCTGGTTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCACACAGCCACATATCTGGTCCACACAGTCACATATCTGGTTCACA  300

seq1  CAGCCACATATCTGGTCCACACAGTCACATATCTGGTTCACACAGTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACATATCTGGTCCACACAGTCACATATCTGGTTCACACAGTCACA  350

seq1  ACAGTAAAATGATGAAGCAAAGCATCCTCCACAATAACGAACGGAGGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAAATGATGAAGCAAAGCATCCTCCACAATAACGAACGGAGGGCT  400

seq1  CTGGACCAGGACACACAGGGCTGATTTACGTGGCCCCACCCTCCAGTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCAGGACACACAGGGCTGATTTACGTGGCCCCACCCTCCAGTAAT  450

seq1  GCTTGCATTAAGGGAAGCTGTCATCAACCTACTTGCAAACCCCAACATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCATTAAGGGAAGCTGTCATCAACCTACTTGCAAACCCCAACATTC  500

seq1  CATTTCTCAGAAAGTAAATTTACTTGAGACTGATCTAGTCCAATTCCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTCAGAAAGTAAATTTACTTGAGACTGATCTAGTCCAATTCCAAT  550

seq1  AAATTCTAGAATACAATGAAAACTATAAACAAATTTGTAAAATAATCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTAGAATACAATGAAAACTATAAACAAATTTGTAAAATAATCACT  600

seq1  TCAAGCCACAAGCAAGAGGCATCCTTCAAAAATGAAATACAACAAAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCCACAAGCAAGAGGCATCCTTCAAAAATGAAATACAACAAAGAGA  650

seq1  AACCTTTACGCATGAATCAAATTAAAATTAATCTGTATGATATATGTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTACGCATGAATCAAATTAAAATTAATCTGTATGATATATGTGGG  700

seq1  GGGGGGG  707
      |||||||
seq2  GGGGGGG  707