BAC Information

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BAC

Clone NameB6Ng01-081L12
Chromosome5 (Build37)
Map Location 92,335,691 - 92,497,653
singlet/doubletdoublet
Overlap geneRchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2
Upstream gene1110019K23Rik, Epgn, Ereg, Areg, Btc, 9130213B05Rik, EG665860, LOC665864, LOC100040506, Ppia-ps5_892.1
Downstream geneVdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2, Gm1381, D5Ertd593e, 4932413O14Rik, Shroom3, LOC623798, Ankrd56
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081L12.bB6Ng01-081L12.g
ACCDH896483DH896484
length1,023991
definitionDH896483|Mus musculus domesticus DNA, BAC clone: B6Ng01-081L12, 5' end.DH896484|Mus musculus domesticus DNA, BAC clone: B6Ng01-081L12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,497,046 - 92,497,653)(92,335,691 - 92,336,687)
sequence
gaattcaaattaatgcagaaaagcaaatccgttgacctttttgggttgtg
aggaaaatgtacacacagtgatgggtagttaatgtggtagcacaagaagt
ttattttcttcacccttttcttctgtaaaggatatacaccacaaagtgtt
atctctgaacttcagtgaatgtcataccaaaattcgtcatgtggatgctc
atgcaaccttgagtgatggtgtagtggtacaggtcatgggcttgctgtct
aacagtggacagcctgagaggaagtttatgcaaacctttgttctggctcc
agaagtaagttttcacttcatttactttgtatttctatgatttgttgtta
atagcttattgaaaatgctagagtttcttcctacaggcttggatttgctt
gttgctctttttttaattatctaactgatatttgaattttacttactttt
atgggtgttttgcctttatgtctgtgcactatttgcatacctggtatctc
tgactgtcctgtaactgatattatagacagttgctccatgggtgttcaga
atcaaaccctggtcctgtaggagaacagctcacccttaactggtaaacca
tctcttcagctccagcccctttaactttgtttcttgtcttatgtgtttga
atgcttttttttttaaagatttatttattatatgtaagtacactgtagct
gtcttcagacactccagaagagtgcgccagatctcgttacagatggttgt
gagccaccatgtggttgctgggaattgaactcagagcagtcagtgctctt
aaaccctgagccatctcgccagccccatgtttgaatgttttttttgcttg
tatggatattgtctgatacccatagaagtgggaaaggtatcagatcctct
ggaactggagtacattgtgagctgcctgctgggaattaaccctggtcttc
aaagcacctgtttttttttttttttttacactagccattctcctcctgct
gcactgtggtttttttttttttt
gaattcatgatctttctacctctttatcccttttgtctttgtcactggga
ttataggcacaaagcaccatgcccagtgactaaagcaaaggttttgcaag
acttagtaaactcgagtcactttacctggccatcttgttaatattttcta
aatcttgtttacattttgttctttgactgttggagcccattggctaccca
ggcagaggtgacagccatatgctatgtccacactcctgaggcttagcaca
agggcagatcattttatagataaccccaatgctgcttgacagaccacaga
gccaaatggttggaccaatgatccacaccaagagcaagggtgtttgtgag
acccttgtagacaagtctcagcttctaacgtggcctttttcatagctcat
gtagagtttaagtgccctgggtcacagtgtatgcttatgtgccttcttct
tcatagtcactttgcatagtcactggatctggaatgtcacatacccagct
gtgagatgtactcaccctaatgggtcacagactcgttttaaaatgccatt
tgcaaatttccttctctccagcctgcaaaggacataatgagataatgtgt
ttcgaaaacacttttgtaaactgtgaagtactgtttttatggaaacttaa
gtgggttggttttttttttttaatgttaaaaatgaacagaagcttttaga
aaacggagtttcagaaaggctagtgctaagataatgggactcatacttta
aggtggatttgtgctaatgacttataccatttttacaggcagaatcctgt
tcaataaacaaaccatttgaacggaccccaccttcctcttgccctgtttt
caaataaataggtgttgtgcacttccatctcccgagcggctagacaaggg
aaccttaggttatctgtgagtctgtgatccctgatcccatactctgttgc
acgctcttcttgccaaccaacacaatacattcccagaggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_92497046_92497653
seq2: B6Ng01-081L12.b_29_637 (reverse)

seq1  CTGAAGAGATGGTTTACCAGTTAAGGGTGAGCTGTTCTCCTACAGGACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAGATGGTTTACCAGTTAAGGGTGAGCTGTTCTCCTACAGGACCA  50

seq1  GGGTTTGATTCTGAACACCCATGGAGCAACTGTCTATAATATCAGTTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGATTCTGAACACCCATGGAGCAACTGTCTATAATATCAGTTACA  100

seq1  GGACAGTCAGAGATACCAGGTATGCAAATAGTGCACAGACATAAAGGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTCAGAGATACCAGGTATGCAAATAGTGCACAGACATAAAGGCAA  150

seq1  AACACCCATAAAAGTAAGTAAAATTCAAATATCAGTTAGATAATTAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCATAAAAGTAAGTAAAATTCAAATATCAGTTAGATAATTAAAAA  200

seq1  AAGAGCAACAAGCAAATCCAAGCCTGTAGGAAGAAACTCTAGCATTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAACAAGCAAATCCAAGCCTGTAGGAAGAAACTCTAGCATTTTCA  250

seq1  ATAAGCTATTAACAACAAATCATAGAAATACAAAGTAAATGAAGTGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCTATTAACAACAAATCATAGAAATACAAAGTAAATGAAGTGAAAA  300

seq1  CTTACTTCTGGAGCCAGAACAAAGGTTTGCATAAACTTCCTCTCAGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTCTGGAGCCAGAACAAAGGTTTGCATAAACTTCCTCTCAGGCTG  350

seq1  TCCACTGTTAGACAGCAAGCCCATGACCTGTACCACTACACCATCACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGTTAGACAGCAAGCCCATGACCTGTACCACTACACCATCACTCA  400

seq1  AGGTTGCATGAGCATCCACATGACGAATTTTGGTATGACATTCACTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGCATGAGCATCCACATGACGAATTTTGGTATGACATTCACTGAAG  450

seq1  TTCAGAGATAACACTTTGTGGTGTATATCCTTTACAGAAGAAAAGGGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGATAACACTTTGTGGTGTATATCCTTTACAGAAGAAAAGGGTGA  500

seq1  AGAAAATAAACTTCTTGTGCTACCACATTAACTACCCATCACTGTGTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAAACTTCTTGTGCTACCACATTAACTACCCATCACTGTGTGTA  550

seq1  CATTTTCCTCACAACCCAAAAAGGTCAAC-CATTTGCTTTTCTGCATTAA  599
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  CATTTTCCTCACAACCCAAAAAGGTCAACGGATTTGCTTTTCTGCATTAA  600

seq1  TTTGAATTC  608
      |||||||||
seq2  TTTGAATTC  609

seq1: chr5_92335691_92336687
seq2: B6Ng01-081L12.g_71_1061

seq1  GAATTCATGATCTTTCTACCTCTTTATCCCTTTTGTCTTTGTCACTGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGATCTTTCTACCTCTTTATCCCTTTTGTCTTTGTCACTGGGA  50

seq1  TTATAGGCACAAAGCACCATGCCCAGTGACTAAAGCAAAGGTTTTGCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGCACAAAGCACCATGCCCAGTGACTAAAGCAAAGGTTTTGCAAG  100

seq1  ACTTAGTAAACTCGAGTCACTTTACCTGGCCATCTTGTTAATATTTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTAAACTCGAGTCACTTTACCTGGCCATCTTGTTAATATTTTCTA  150

seq1  AATCTTGTTTACATTTTGTTCTTTGACTGTTGGAGCCCATTGGCTACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGTTTACATTTTGTTCTTTGACTGTTGGAGCCCATTGGCTACCCA  200

seq1  GGCAGAGGTGACAGCCATATGCTATGTCCACACTCCTGAGGCTTAGCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGTGACAGCCATATGCTATGTCCACACTCCTGAGGCTTAGCACA  250

seq1  AGGGCAGATCATTTTATAGATAACCCCAATGCTGCTTGACAGACCACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGATCATTTTATAGATAACCCCAATGCTGCTTGACAGACCACAGA  300

seq1  GCCAAATGGTTGGACCAATGATCCACACCAAGAGCAAGGGTGTTTGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATGGTTGGACCAATGATCCACACCAAGAGCAAGGGTGTTTGTGAG  350

seq1  ACCCTTGTAGACAAGTCTCAGCTTCTAACGTGGCCTTTTTCATAGCTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGTAGACAAGTCTCAGCTTCTAACGTGGCCTTTTTCATAGCTCAT  400

seq1  GTAGAGTTTAAGTGCCCTGGGTCACAGTGTATGCTTATGTGCCTTCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGTTTAAGTGCCCTGGGTCACAGTGTATGCTTATGTGCCTTCTTCT  450

seq1  TCATAGTCACTTTGCATAGTCACTGGATCTGGAATGTCACATACCCAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTCACTTTGCATAGTCACTGGATCTGGAATGTCACATACCCAGCT  500

seq1  GTGAGATGTACTCACCCTAATGGGTCACAGACTCGTTTTAAAATGCCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATGTACTCACCCTAATGGGTCACAGACTCGTTTTAAAATGCCATT  550

seq1  TGCAAATTTCCTTCTCTCCAGCCTGCAAAGGACATAATGAGATAATGTG-  599
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGCAAATTTCCTTCTCTCCAGCCTGCAAAGGACATAATGAGATAATGTGT  600

seq1  TTCGAAAACAC-TTTGTAAACTGTGAAGTACTGTTTTTATGGAAACTTAA  648
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTCGAAAACACTTTTGTAAACTGTGAAGTACTGTTTTTATGGAAACTTAA  650

seq1  GTGGGTTGG-TTTTTTTTTTTAATGTTAAAAATGAACAGAAGC-TTTAGA  696
      ||||||||| ||||||||||||||||||||||||||||||||| ||||||
seq2  GTGGGTTGGTTTTTTTTTTTTAATGTTAAAAATGAACAGAAGCTTTTAGA  700

seq1  AAACGGAGTTTCAGAAAGGCTAGTGCTAAGATAATGGGACTCATACTTTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGAGTTTCAGAAAGGCTAGTGCTAAGATAATGGGACTCATACTTTA  750

seq1  AGGTGGATTTGTGCTAATGACTTATACCATTTTTACAGGCAGAATCCTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGATTTGTGCTAATGACTTATACCATTTTTACAGGCAGAATCCTGT  800

seq1  TCAATAAACAAACCATTTGAACGGACCCCACCTTCCTCTTGCCCTGTTTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAACAAACCATTTGAACGGACCCCACCTTCCTCTTGCCCTGTTTT  850

seq1  CAAAATAAATAGGTGTTGTGCACTTCCAATCTCCCGAGCGGCTAAGACAA  896
      | ||||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  C-AAATAAATAGGTGTTGTGCACTTCC-ATCTCCCGAGCGGCT-AGACAA  897

seq1  GGTAACCTTAGGTTATCTGTGCAGTCTGTGTAGCCCCTGATCCCAGTACT  946
      || |||||||||||||||||| ||||||||    ||||||||||| ||||
seq2  GGGAACCTTAGGTTATCTGTG-AGTCTGTG--ATCCCTGATCCCA-TACT  943

seq1  CTGGTTGCACGCTTCTCTATGCCAACCAAACACAATACATCCCCAGAGGA  996
      || ||||||||||  ||| |||||||| |||||||||||| |||||||||
seq2  CT-GTTGCACGCTCTTCT-TGCCAACC-AACACAATACATTCCCAGAGGA  990

seq1  C  997
      |
seq2  C  991