BAC Information

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BAC

Clone NameB6Ng01-083D05
Chromosome5 (Build37)5 (Build37)
Map Location 15,138,097 - 15,139,21015,184,482 - 15,185,649
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d
Downstream gene4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083D05.bB6Ng01-083D05.g
ACCDH897530DH897531
length1,1171,140
definitionDH897530|Mus musculus domesticus DNA, BAC clone: B6Ng01-083D05, 5' end.DH897531|Mus musculus domesticus DNA, BAC clone: B6Ng01-083D05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(15,138,097 - 15,139,210)(15,184,482 - 15,185,649)
sequence
gaattcacatggaattagatttttcaaatttttcattttattaaaaaaga
gagaatcattgtctacaaattcttttatgtccaactatgcaaatacaact
tcaagcactctggaaattctatgatggtgctaacaatttcaggaatttcc
aacaggacacataacaagaaaaatccatatagtacaagtcttaggtgtta
gctgaattttcaaatcagaaagcaaagagaagaatttacattttcagtaa
ctttaggatctgtgagtgttgttaatttaaataccgttatgaggagtcca
ggtacagcaggatattaggccatgcaatcgtatagggagatacagaagct
acatagtacttcaagtgttgctatcatatatgtctaagtgacattttaca
gattaatgccaagtaaaatcaaaatatagtcccctacccattacatctta
aaacgcaatgatctatcaacagttgccatttcacagcaaaagaaagcagt
aggtataaattgaacacagaactgcttctcttgtaagaaatgaacacaga
tatatagatacatgtatacttatacattctctttgaaattcaaggtggtt
aatttgctttactaccatataaaaacaatctcgctgtggtcagtgaaaaa
agctcattttccatgtttaaaaagtacattggctgggcataatggcgcac
gcctttaatcccagctctggggaggcagaggcaagcagatttctgagttg
gaggccagcctggtctacaaagtgacttccaggacagccagggctataca
gagcaaccctgtctagagaaaccaaaaacataaaaaaaagaaagtacaca
ttgtctctggcaaggaatcacatccacagaccacttagacctatgtgatt
tgggctagaatgcagacataccctaattacacacgtttaatcccaaacaa
tgaaagttaggttcatttatagaaggaagagtcaagtttgtaagtgacat
ctaattgaggggcaaagtgataattcagagagataacagaatgagtcaga
gaaaggatatgccaattcttatgaggacatctaggaaagaaggactagga
agctggggaggggaggg
gaattcaccaggaaagaacaagagcccaaaaggcagaggagaagtgttca
tgggtgcactagccagttacctctggaagagcagctgcatggattcagga
tgcacttcatgcacactgggtgccatgctggatggctgtggaaagtcatc
tcttactaagtcctaatcaaaatgcttctagagaactccacactgagtca
gtgttttctgttcccaagcaaaccacagcactgatctccatctgtttttc
tctgactcttaaaacatccttccaaattgaaaaacaaagcacaaaatcat
cttaattgccttgccaaaggattggaaaggagcaccactttttgttcaga
agacaacttcagaaaacaaaagagaagcctcaaatgggccaaaagccaca
aattgaaaaacaaaagaaaaacaaggctggctgtctactgccagcaggcg
ttcaccagggagaggagctctgactccaaaatagtcacttttccattttg
tcaatgatggcaaagggccatgggtgctggctaaaggaaggaaaggatgt
tccaggaagaaaacaggtctctttgttgcaagaactgcattctcacttgt
atccaatgctgataactggcagcagaaactctgggagggtcacatctatg
tggtgacacaagaagctttctccagggtctagcacactcttaccaaagcc
tcttgcccaggttcgctatctcatctaaatgctcactcgcattaagggac
aacatggtgtaattggaaatggacagacacatttacttatagttttggcc
ataactggacaaggagaaagtctcagctacattccaccaggcccatagaa
ctctcagaccaaatagaaaggatgaaagataggaaaatacacacttcagt
gtcagctgtgggcccagtttccaggagatgggagatggtcattttcctca
gtgccagagatgatgccctttgggtgggcattttcactcacagtttggta
gtcctgcaaggagtcttgcttcttatggctcctttacagttaagcgtgac
acatttaagaaaaaaacattcaaacaaagcagttgatcctttgttaatta
caagaaaaaacagataatatagctagttcggttaagatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15138097_15139210
seq2: B6Ng01-083D05.b_43_1159 (reverse)

seq1  CCCT-CCCTCCCCAACTCTCTTAAGTCCTTTCTTTCCTCGCTGTCCTCAT  49
      |||| ||||||||| ||  ||  ||||| ||||||||| | |||||||||
seq2  CCCTCCCCTCCCCAGCTTCCT--AGTCC-TTCTTTCCTAGATGTCCTCAT  47

seq1  AAGAATTGGGCATATCCTATCTCTGACTCATTCTGTTATCTCTCTGAATT  99
      ||||||| |||||||||| |||||||||||||||||||||||||||||||
seq2  AAGAATT-GGCATATCCTTTCTCTGACTCATTCTGTTATCTCTCTGAATT  96

seq1  ATCACTTTGCCCCTCAATTAGATGTCACTTACAAACATGACTCTTCCTTC  149
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATCACTTTGCCCCTCAATTAGATGTCACTTACAAACTTGACTCTTCCTTC  146

seq1  TATAAATGAACCTTACTTTCATTGTTTGGGATTAAACGTGTGTAATTAGG  199
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TATAAATGAACCTAACTTTCATTGTTTGGGATTAAACGTGTGTAATTAGG  196

seq1  GTATGTCTGCATTCTAG-CCAAATCACATAGGTCTAAGTGGTCTATGGAT  248
      ||||||||||||||||| |||||||||||||||||||||||||| |||||
seq2  GTATGTCTGCATTCTAGCCCAAATCACATAGGTCTAAGTGGTCTGTGGAT  246

seq1  GTGATTCCTTGCCAGAGACAATGTGTACTTTTTTTTTTTT---TTTTTGG  295
      ||||||||||||||||||||||||||||||| ||||||||   |||||||
seq2  GTGATTCCTTGCCAGAGACAATGTGTACTTTCTTTTTTTTATGTTTTTGG  296

seq1  TTTTTCGAGACAGGGTTTCTCTGTATAGCTCTGGCTATCCTGGAACTCAC  345
      ||| || |||||||||| ||||||||||| |||||| |||||||| ||||
seq2  TTTCTCTAGACAGGGTTGCTCTGTATAGCCCTGGCTGTCCTGGAAGTCAC  346

seq1  TTTGTAGACCAGGCTGGCCTCCAACTCAGAAATCTGCCTGCCTCTGCCTC  395
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTGTAGACCAGGCTGGCCTCCAACTCAGAAATCTGCTTGCCTCTGCCTC  396

seq1  CCCAGAGCTGGGATTAAAGGCGTGTGCCACCACACCCGGCCAATGTACTT  445
      |||||||||||||||||||||||| ||||  |  ||| ||||||||||||
seq2  CCCAGAGCTGGGATTAAAGGCGTGCGCCATTATGCCCAGCCAATGTACTT  446

seq1  TTTAAATGTGGAAAATGAGCTTTTTTCCCTGACCACAGCGAGATTGTTTT  495
      ||||||  ||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTAAACATGGAAAATGAGCTTTTTTCACTGACCACAGCGAGATTGTTTT  496

seq1  TATATGGTAGTAAAGCAAATTAACCACCTTGAATTTCAAAGAGAATGTAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGTAGTAAAGCAAATTAACCACCTTGAATTTCAAAGAGAATGTAT  546

seq1  AAGTGTACATGT-TCTATATATCTGTGTTCATTTCTTACAAGAGAAGCAG  594
      |||| ||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAGTATACATGTATCTATATATCTGTGTTCATTTCTTACAAGAGAAGCAG  596

seq1  TTCTGTGTTCAATTTATACCTACTGCTTTCTTCCTGCTGTGAAATGGCAA  644
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  TTCTGTGTTCAATTTATACCTACTGCTTTCTT-TTGCTGTGAAATGGCAA  645

seq1  CTGTTGATAGATCATTGTGTTTTAAGATGTAATGGGTAGGGGACTATATT  694
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTGTTGATAGATCATTGCGTTTTAAGATGTAATGGGTAGGGGACTATATT  695

seq1  TTTATTTTACTTGGCATTAATCTGTAAAATGTCACTTAGACATATATGAT  744
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTACTTGGCATTAATCTGTAAAATGTCACTTAGACATATATGAT  745

seq1  AGCAACACTTGAAGTACTATGTAGCTTCTGTATCTCCGTATATGATTGCA  794
      ||||||||||||||||||||||||||||||||||||| |||| |||||||
seq2  AGCAACACTTGAAGTACTATGTAGCTTCTGTATCTCCCTATACGATTGCA  795

seq1  TGGCCTAATATCCTCTTGTACCTGGACTCCTCATAACTGTATTTAAATTA  844
      ||||||||||||||  ||||||||||||||||||||| ||||||||||||
seq2  TGGCCTAATATCCTGCTGTACCTGGACTCCTCATAACGGTATTTAAATTA  845

seq1  ACAACACTCACAGATCCTAAAGTTACTGAAAATGTAAAT--TTCTCTTTG  892
      |||||||||||||||||||||||||||||||||||||||  |||||||||
seq2  ACAACACTCACAGATCCTAAAGTTACTGAAAATGTAAATTCTTCTCTTTG  895

seq1  CTTTCTGATTTGAAAATTCAGCTAACACCTAAGACTTGTACTATATGGAT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGATTTGAAAATTCAGCTAACACCTAAGACTTGTACTATATGGAT  945

seq1  TTTTCTTGTTATGTGTCCTGTTGGAAATTCCTGAAATTGTTAGCACCATC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGTTATGTGTCCTGTTGGAAATTCCTGAAATTGTTAGCACCATC  995

seq1  ATAGAATTTCCAGAGTACTTGAAGTTGTATTTGCATAGTTGGACATAAAA  1042
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATAGAATTTCCAGAGTGCTTGAAGTTGTATTTGCATAGTTGGACATAAAA  1045

seq1  GAATTTGTAGACAATGATTCTCTCTTTTTTAATAAAATGAAAAATTTGAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGTAGACAATGATTCTCTCTTTTTTAATAAAATGAAAAATTTGAA  1095

seq1  AAATTTAATTCCATGTGAATTC  1114
      |||| |||||||||||||||||
seq2  AAATCTAATTCCATGTGAATTC  1117

seq1: chr5_15184482_15185649
seq2: B6Ng01-083D05.g_66_1205 (reverse)

seq1  AGATCTTTAAACTGAACTAGCTATAATTATCTGTTTTTATCCTTGGTAAA  50
      |||||||  ||| ||||||||||| ||||||||||||  | ||||   ||
seq2  AGATCTT--AACCGAACTAGCTAT-ATTATCTGTTTT--TTCTTG--TAA  43

seq1  TAAACAAAGGGGATCACTCTGCTTTGTTTGAATGGTTTTTTCTTAAATGT  100
      | ||||||  ||||||  |||||||||||||||| |||||||||||||| 
seq2  TTAACAAA--GGATCA-ACTGCTTTGTTTGAATGTTTTTTTCTTAAATG-  89

seq1  TGTCACGCTTAACTGTAAAGGGGCCATAAGAAGCAAGACTCCCTGAAGGA  150
      ||||||||||||||||||||| |||||||||||||||||||| || ||| 
seq2  TGTCACGCTTAACTGTAAAGGAGCCATAAGAAGCAAGACTCCTTGCAGG-  138

seq1  ACTACCAAACTGTGAGTGAAAATGGCCCACCCAAAGGGCATCATCTCTGG  200
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACTACCAAACTGTGAGTGAAAAT-GCCCACCCAAAGGGCATCATCTCTGG  187

seq1  CACTGGAGGAAAACGACCATCTCCCATCTCCTGGAAACTGGGCCCACAGC  250
      |||| |||||||| ||||||||||||||||||||||||||||||||||||
seq2  CACT-GAGGAAAATGACCATCTCCCATCTCCTGGAAACTGGGCCCACAGC  236

seq1  TGACACTGAAGTGTGTATTTTCCATCCTTCTATTTGTGTATCTTTCATCC  300
      |||||||||||||||||||||||               ||||||||||||
seq2  TGACACTGAAGTGTGTATTTTCC---------------TATCTTTCATCC  271

seq1  -TTCTATTTGGTCTGAGAGTGCTATGGGCCTGGTGGAATGTAGCTGAGAC  349
       ||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTCTATTTGGTCTGAGAGTTCTATGGGCCTGGTGGAATGTAGCTGAGAC  321

seq1  TTTCTCCTTTTCCAGTTATGGCCAAAACTATAAGTAAATGTGTCTGTCCA  399
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTTGTCCAGTTATGGCCAAAACTATAAGTAAATGTGTCTGTCCA  371

seq1  TTTCCAATTACACCATGTTGTCCCTTAATGCGAGTGAGCATTTAGATGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATTACACCATGTTGTCCCTTAATGCGAGTGAGCATTTAGATGAG  421

seq1  ATAGCGAACCTGGGCAAGAGGCTTTGGTAAGAGTGTGCTAGACCCTGGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCGAACCTGGGCAAGAGGCTTTGGTAAGAGTGTGCTAGACCCTGGAG  471

seq1  AAAGCTTCTTGTGTCACCACATATATGTGACCCTCCCAGAGTTTCTGCTG  549
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAAGCTTCTTGTGTCACCACATAGATGTGACCCTCCCAGAGTTTCTGCTG  521

seq1  CCAGTTATCAGCATTGGATACAAGTGAGAATGCAGTTCTTGCAACAAAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTATCAGCATTGGATACAAGTGAGAATGCAGTTCTTGCAACAAAGA  571

seq1  GACCTGTTTTCTTCCTGGAACATCCTTTCCTTCCTTTAGCCAGCACCCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGTTTTCTTCCTGGAACATCCTTTCCTTCCTTTAGCCAGCACCCAT  621

seq1  GGCCTTTTGCCATCATTGACAAAATGTTAAAGTGACTATTTTGGAGTCAG  699
      |||| |||||||||||||||||||||  ||||||||||||||||||||||
seq2  GGCCCTTTGCCATCATTGACAAAATGGAAAAGTGACTATTTTGGAGTCAG  671

seq1  AGCTCCTCTCCCTGGTGAACGCCTGCTGGCAGTAGACAGCCAGCCTTGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTCTCCCTGGTGAACGCCTGCTGGCAGTAGACAGCCAGCCTTGTT  721

seq1  TTTCTTTTGTTTTTCAATTTGTGGCTTTTGGCCCGTTTGAGGCTTCTCTT  799
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTCTTTTGTTTTTCAATTTGTGGCTTTTGGCCCATTTGAGGCTTCTCTT  771

seq1  TTGTTTTCTGAAGTTGTCTTCTGAACAAAAAGTGGTGCTCCTTTCCAATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCTGAAGTTGTCTTCTGAACAAAAAGTGGTGCTCCTTTCCAATC  821

seq1  CTTTGGCAAGGCAATTAAGATGATTTTGTGCTTTGTTTTTCAATTTGGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCAAGGCAATTAAGATGATTTTGTGCTTTGTTTTTCAATTTGGAA  871

seq1  GGATGTCTTAAGAGTCAGAGAAAAACAGATGGAGATCAGTGCTGTGGTTT  949
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTTTAAGAGTCAGAGAAAAACAGATGGAGATCAGTGCTGTGGTTT  921

seq1  GCTTGGGAACAGAAAGCCCTGACTCAGTGTGGAGTTCTCTAGAAGCATTT  999
      ||||||||||||||| | ||||||||||||||||||||||||||||||||
seq2  GCTTGGGAACAGAAAACACTGACTCAGTGTGGAGTTCTCTAGAAGCATTT  971

seq1  TGATTAGGACTTAGTAAGAGATGACTTTCCACAGCCATCCAGCATGGCAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAGGACTTAGTAAGAGATGACTTTCCACAGCCATCCAGCATGGCAC  1021

seq1  CCAGTGTGCATGAAGTGCATCCTGAATCCATGCAGCTGCTCTTCCAGAGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTGCATGAAGTGCATCCTGAATCCATGCAGCTGCTCTTCCAGAGG  1071

seq1  TAACTGGCTAGTGCACCCATGAACACTTCTCCTCTGCCTTTTGGGCTCTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGCTAGTGCACCCATGAACACTTCTCCTCTGCCTTTTGGGCTCTT  1121

seq1  GTTCTTTCCTGGTGAATTC  1168
      |||||||||||||||||||
seq2  GTTCTTTCCTGGTGAATTC  1140