BAC Information

Click to search

BAC

Clone NameB6Ng01-084D21
Chromosome5 (Build37)
Map Location 18,198,846 - 18,355,570
singlet/doubletdoublet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084D21.bB6Ng01-084D21.g
ACCDH898261DH898262
length1,0971,075
definitionDH898261|Mus musculus domesticus DNA, BAC clone: B6Ng01-084D21, 5' end.DH898262|Mus musculus domesticus DNA, BAC clone: B6Ng01-084D21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,198,846 - 18,199,834)(18,354,502 - 18,355,570)
sequence
gaattcctcctatcaaaagaaagtgcaggaacaaacagtgcatcagagac
tgaaggaaaggccatccagagactgccccacctagaaatccattccatct
atgacaccaaacccagactctattgctgatgccaagaagtaatttttcac
aggagcccagtgtaactctgccaaagctggaccaatacaggtgcagatgt
caaacattggactgagtgtggggaccccgataggaagttaggagctgaag
gtgtttaaaatctcataggaaggacaacaatatcaaacaaccagaaacac
caaagctcccagggactaaaccagcaaacaaagagtacacaggagctacc
catggctccagatggatacgtaaagaagataaccttacttagcatcactg
aaaagggagcccctttgacctgtggaggcttgatgacccaggatagggga
atattatgctgttgaggcaggagtgagtgggctggtgggggagcactctc
atagaggcaggggagagggaggaggagatgggtggcttgtggaggggaaa
ctggaacggaggataacatttgaaatgtgaataaataaaataaacaataa
aaaacagacctctcaacttgcccagtgccagcatgtgctgggtattatta
gtggaatagaaaaatttctgttttctacatctacttcagattggtaacta
actatttgcatagtatcgggcaaaatcaatctttgttggtatctcaaggc
tggtcttgggacttatgttgcttctgtttgagcctgccaagggcacgtga
ctcacacaggtgtttgcttatgtgtacgtgagacatttgttttacagcct
ttttccattgagcatgtcatgtgtagttacattctcttcgtatactctct
ataatagatataaaaacttttgattttctttattcactgattataatagc
tcatttgccaatttgactatttgctacttctagaagaataaatacattgt
tttcttcaggaggggaataaggctttaagtggcagaattgattcttccaa
ttttttccctgagtatctcgacaattgaacacaagttttgggttgga
gaattctctggatgctcagtgactgatgagactcctggctctgactgccg
ccatacaccttactatgacatgtgccaatatacctgatgtgtttagagcc
aggttctggctttgaatctgcattacagattactgggtttgtattctttg
ggaaactaaacatgaggattaacaacaattctacctttttaaaggtactg
aaagactcacaacgtgaggactcccccacgttctgactcaggagaggcga
caccccaaaatcacccacaagaaacggtcttgctgcaaactgcaagagga
tttttattcaagagcgctcttgggaccacggtcatataccacgcaggggt
agaggagcgtggcgccccaagtagctggataaggggatatttaaaggaag
aaaccacaactcaaggaagtggggagggcgttgttggaaaaaaaaaaaaa
aacaccaaagataccagttaagagtcacaaggaagtgcaaagtcacattg
ttcaggttatctcttaagatagtttttttttttttttttttttttttttt
gccaaagaactcactttatttttcagttcaaaactgatgaagaaatccga
atgtagaaattctgtaaaaatatttcacttctaagtcacattttgtttta
gataccgaatgtctccagcccacatacaagcataagaaatgataaaaatg
acagtgatgtgcctgccatccagctgcaccaaaactttgcctcgtgccat
aagtgtttcctgactaatgttctttttttctcctcagaggtcatcatccc
tgtgaagataggatttctcgttatttttttattttttttttttggctccg
ccgggatatattttcccacatacctcccattcgccattcttttccaagat
aaatttcaagataaagttttcttttttctttttcatttttattaggatta
agcccatttttatatttcccatggcataccaaagtccccatacccacccc
cacaggttctaggagccctaacaatagcacatttcttttgaaatatacac
tcttttgaccaggaaacaggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18198846_18199834
seq2: B6Ng01-084D21.b_148_1140

seq1  CACCAAACCCAGACTCTATTGCTGATGCCAAGAAGTAATTTTTCACAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAACCCAGACTCTATTGCTGATGCCAAGAAGTAATTTTTCACAGGA  50

seq1  GCCCAGTGTAACTCTGCCAAAGCTGGACCAATACAGGTGCAGATGTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTGTAACTCTGCCAAAGCTGGACCAATACAGGTGCAGATGTCAAA  100

seq1  CATTGGACTGAGTGTGGGGACCCCGATAGGAAGTTAGGAGCTGAAGGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGACTGAGTGTGGGGACCCCGATAGGAAGTTAGGAGCTGAAGGTGT  150

seq1  TTAAAATCTCATAGGAAGGACAACAATATCAAACAACCAGAAACACCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCTCATAGGAAGGACAACAATATCAAACAACCAGAAACACCAAA  200

seq1  GCTCCCAGGGACTAAACCAGCAAACAAAGAGTACACAGGAGCTACCCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCAGGGACTAAACCAGCAAACAAAGAGTACACAGGAGCTACCCATG  250

seq1  GCTCCAGATGGATACGTAAAGAAGATAACCTTACTTAGCATCACTGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGATGGATACGTAAAGAAGATAACCTTACTTAGCATCACTGAAAA  300

seq1  GGGAGCCCCTTTGACCTGTGGAGGCTTGATGACCCAGGATAGGGGAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCCCTTTGACCTGTGGAGGCTTGATGACCCAGGATAGGGGAATAT  350

seq1  TATGCTGTTGAGGCAGGAGTGAGTGGGCTGGTGGGGGAGCACTCTCATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGTTGAGGCAGGAGTGAGTGGGCTGGTGGGGGAGCACTCTCATAG  400

seq1  AGGCAGGGGAGAGGGAGGAGGAGATGGGTGGCTTGTGGAGGGGAAACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGGGAGAGGGAGGAGGAGATGGGTGGCTTGTGGAGGGGAAACTGG  450

seq1  AACGGAGGATAACATTTGAAATGTGAATAAATAAAATAAACAATAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGAGGATAACATTTGAAATGTGAATAAATAAAATAAACAATAAAAAA  500

seq1  CAGACCTCTCAACTTGCCCAGTGCCAGCATGTGCTGGGTATTATTAGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTCTCAACTTGCCCAGTGCCAGCATGTGCTGGGTATTATTAGTGG  550

seq1  AATAGAAAAA-TTCTG-TTTCTACATCTACTTCAGATTGGTAACTAACTA  598
      |||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  AATAGAAAAATTTCTGTTTTCTACATCTACTTCAGATTGGTAACTAACTA  600

seq1  -TTGCATAGTATCGGGCAAAATCAATCTTTGTTGGTATCTCAAGGCTGGT  647
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATAGTATCGGGCAAAATCAATCTTTGTTGGTATCTCAAGGCTGGT  650

seq1  CTT-GGACTTATGTTGCTTCTGTTTGAGCCTGCCAAGGGCACGTGACTCA  696
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGACTTATGTTGCTTCTGTTTGAGCCTGCCAAGGGCACGTGACTCA  700

seq1  CACAGGTGTTTGCTTATGTGTACGTGAGACATTTGTTTTACAGCC-TTTT  745
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CACAGGTGTTTGCTTATGTGTACGTGAGACATTTGTTTTACAGCCTTTTT  750

seq1  CCATTGAGCATGTCATGTGTAGTTACATTCTCTTCGTATACTCTCTATAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGAGCATGTCATGTGTAGTTACATTCTCTTCGTATACTCTCTATAA  800

seq1  TAGATTATAAAAACTTTTGATTTTCTTTATTCACTGATTATAATAGCTCA  845
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGA-TATAAAAACTTTTGATTTTCTTTATTCACTGATTATAATAGCTCA  849

seq1  TTTGCCAATTTGACTA-TTGCTACTTTCTAGAAGAAAAAATACATGTTTC  894
      |||||||||||||||| ||||||| ||||||||||| ||||||||  || 
seq2  TTTGCCAATTTGACTATTTGCTAC-TTCTAGAAGAATAAATACATTGTTT  898

seq1  TCTACAGGAGGGGAA-AAGGC-TTAAGTGGCAGGATTGATTCTTCCAATT  942
      ||| ||||||||||| ||||| ||||||||||| ||||||||||||||||
seq2  TCTTCAGGAGGGGAATAAGGCTTTAAGTGGCAGAATTGATTCTTCCAATT  948

seq1  TTTCTCATGAGTATACTTAGACATTTGAACACAAAGTTTTGGTTGGA  989
      |||  | |||||||   | |||| ||||||||||  ||| |||||||
seq2  TTTTCCCTGAGTAT--CTCGACAATTGAACACAAGTTTTGGGTTGGA  993

seq1: chr5_18354502_18355570
seq2: B6Ng01-084D21.g_67_1141 (reverse)

seq1  CCACCCACCTGCTTCCTGGGTTCAAAGAGTGT-TAATTCAAA--GAATGT  47
      |||||  |||| ||||| |||  ||||||||| || ||||||   |||||
seq2  CCACC--CCTGTTTCCT-GGTCAAAAGAGTGTATATTTCAAAAGAAATGT  47

seq1  GCTATTGTTAGGGGCTCTTAGAAACTGT--GGGTGGGTATGGGGGACTTT  95
      |||||||||| |||||| ||||| ||||  |||||||||| |||||| ||
seq2  GCTATTGTTA-GGGCTCCTAGAACCTGTGGGGGTGGGTAT-GGGGAC-TT  94

seq1  TGGTATAGCATTGGAAATAT--AAATGAGCTAAATACCTAATAAAAATGA  143
      ||||||  ||| ||||||||  ||||| ||| ||| ||||||||||||||
seq2  TGGTATGCCATGGGAAATATAAAAATGGGCTTAAT-CCTAATAAAAATGA  143

seq1  AAAAGAAAAAAGAAAAC-TTATC-TGAAAATTATCCTGGAAA--GATTGC  189
      ||||||||||||||||| ||||| ||||| ||||| ||||||   || ||
seq2  AAAAGAAAAAAGAAAACTTTATCTTGAAATTTATCTTGGAAAAGAATGGC  193

seq1  GAATGGGA-GTATGT--GAAAATA-AT-ACAGTGAAGCAAAAAAAAAAAA  234
      |||||||| ||||||  ||||||| ||  | | | |||    ||||||||
seq2  GAATGGGAGGTATGTGGGAAAATATATCCCGGCGGAGC---CAAAAAAAA  240

seq1  AAAAAAAAAAAAAAAAGAGAAATACTAACTTCACAGGGATGATGACCTCT  284
      |||| ||||||| || ||||||| ||| ||||||||||||||||||||||
seq2  AAAATAAAAAAATAACGAGAAATCCTATCTTCACAGGGATGATGACCTCT  290

seq1  GAGGAGAAAAAAAGAACATTAGTCAGGAAACACTTATGGCACGAGGCAAA  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAAAAAAAGAACATTAGTCAGGAAACACTTATGGCACGAGGCAAA  340

seq1  GTTTTGGTGCAGCTGGATGGCAGGCACATCACTGTCATTTTTATCATTTC  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGTGCAGCTGGATGGCAGGCACATCACTGTCATTTTTATCATTTC  390

seq1  TTATGCTTGTATGTGGGCTGGAGACATTCGGTATCTAAAACAAAATGTGA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTTGTATGTGGGCTGGAGACATTCGGTATCTAAAACAAAATGTGA  440

seq1  CTTAGAAGTGAAATATTTTTACAGAATTTCTACATTCGGATTTCTTCATC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAGTGAAATATTTTTACAGAATTTCTACATTCGGATTTCTTCATC  490

seq1  AGTTTTGAACTGAAAAATAAAGTGAGTTCTTTGGCAAAAAAAAAAAAAAA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGAACTGAAAAATAAAGTGAGTTCTTTGGCAAAAAAAAAAAAAAA  540

seq1  AAAAAAAAAAAAACTATCTTAAGAGATAACCTGAACAATGTGACTTTGCA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAACTATCTTAAGAGATAACCTGAACAATGTGACTTTGCA  590

seq1  CTTCCTTGTGACTCTTAACTGGTATCTTTGGTGTTTTTTTTTTTTTTTCC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTGTGACTCTTAACTGGTATCTTTGGTGTTTTTTTTTTTTTTTCC  640

seq1  AACAACGCCCTCCCCACTTCCTTGAGTTGTGGTTTCTTCCTTTAAATATC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACGCCCTCCCCACTTCCTTGAGTTGTGGTTTCTTCCTTTAAATATC  690

seq1  CCCTTATCCAGCTACTTGGGGCGCCACGCTCCTCTACCCCTGCGTGGTAT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTATCCAGCTACTTGGGGCGCCACGCTCCTCTACCCCTGCGTGGTAT  740

seq1  ATGACCGTGGTCCCAAGAGCGCTCTTGAATAAAAATCCTCTTGCAGTTTG  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCGTGGTCCCAAGAGCGCTCTTGAATAAAAATCCTCTTGCAGTTTG  790

seq1  CAGCAAGACCGTTTCTTGTGGGTGATTTTGGGGTGTCGCCTCTCCTGAGT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGACCGTTTCTTGTGGGTGATTTTGGGGTGTCGCCTCTCCTGAGT  840

seq1  CAGAACGTGGGGGAGTCCTCACGTTGTGAGTCTTTCAGTACCTTTAAAAA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACGTGGGGGAGTCCTCACGTTGTGAGTCTTTCAGTACCTTTAAAAA  890

seq1  GGTAGAATTGTTGTTAATCCTCATGTTTAGTTTCCCAAAGAATACAAACC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAATTGTTGTTAATCCTCATGTTTAGTTTCCCAAAGAATACAAACC  940

seq1  CAGTAATCTGTAATGCAGATTCAAAGCCAGAACCTGGCTCTAAACACATC  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATCTGTAATGCAGATTCAAAGCCAGAACCTGGCTCTAAACACATC  990

seq1  AGGTATATTGGCACATGTCATAGTAAGGTGTATGGCGGCAGTCAGAGCCA  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATATTGGCACATGTCATAGTAAGGTGTATGGCGGCAGTCAGAGCCA  1040

seq1  GGAGTCTCATCAGTCACTGAGCATCCAGAGAATTC  1069
      |||||||||||||||||||||||||||||||||||
seq2  GGAGTCTCATCAGTCACTGAGCATCCAGAGAATTC  1075