BAC Information

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BAC

Clone NameB6Ng01-084F02
Chromosome5 (Build37)
Map Location 81,519,536 - 81,687,051
singlet/doubletdoublet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084F02.bB6Ng01-084F02.g
ACCDH898311DH898312
length1,1431,076
definitionDH898311|Mus musculus domesticus DNA, BAC clone: B6Ng01-084F02, 5' end.DH898312|Mus musculus domesticus DNA, BAC clone: B6Ng01-084F02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,519,536 - 81,520,720)(81,685,982 - 81,687,051)
sequence
gaattcatctgaataaaagattcaaatcagatggcagatttgaaaggtga
cattaacctttataaatcatttcattttctctcttatacagatgaagaat
ctgacacaaagaaaaattcagtggcatgttcaaagttacacatcaaacgg
atgctagaaaaacctgttcttccaacttctgattcttttttccaaatacc
acgtaagagagactgttctgtgtagaagaaacaatcactgccctaaattt
atttacataagcagattcacagtcaggtcctagcttacttgagtgttacc
ccaagaaaacaaatgtagaagtgtgtagcttgttgctgttgttttttcta
aatcactttaaaggttatagcatttgtaaaggttaaatatttgagatccg
gaagtatgagttacaactctaaaagctaaacataggactgtacactcctg
agttcaaggatactgtctgcttttgtgttgagtgagagaaaagtttacgg
gttcaaatacaggatgttgttgctggaatcattacattctataggggcta
agttctcatcgtttggctggttggtttattttttaagtttttgagaatac
catcatgaggaccataactactttgaacacaattgatagtatttgtagtg
ctttagcgttaatacactgtttatttgaaattagatgttcctagaggtac
atgtttatctaatcacaaatttctacttgtattaggcaaggagtgattgt
gacactcagactgcattagagggaaaaggtgcaagatgcagaagcaatgg
cagttgttgtcaggaaattaataccaccaagagtgtgcttaccctattgc
tgccagaggcaagccagatagatataagtgcagggaactaatggaaaatg
tcctaccacctgccttttatggaagctgatacattaagtaaacaagcctt
cccttagaaacaggagtcctgtgcatgcttacctgggcctcaaacacctg
atttcttttatgagtctcttatcatttccatctgggttttttgtactgta
agccaaggcctgaactcaagtaagagctttgcttagctatagttcatcag
cagtgataaaggagaagaggagaaagtaggagggagggaagga
gaattcattactggactgtccagcaacagttggcatgcattatggcaggg
agtgactaccaaaccacacagaagtagcttttgtaatcttgtaaaatatg
aagataatgaagacaattgaaatatgaagttgcagttcataattagtttt
agaaagcttatccagtagcaacaagtaagagaaatttgcaaggatgctta
taagctgtgttacactgggaatggctgagttgtaaaagatcttaagtact
taactgataacatagatacaggttaaaaaaaaggcatggagacaatgaca
ataaaaggcctacagcaggcagcaattgaaacatgataatagtgtgatgt
gaatcttaatacgatgattatgatatgatcagccaagaaatatatgaggt
agatatatttgtacgaagacaataatgttctttgaaagctataggcgcag
tcattgaacaggcatttggcaacagatattgaaaggtagaagagagacgc
ttatagattattatataagaactactttcttttttttccatttttattag
gtatctagctcatttacatttccaatgctataccaaaagtcccccatacc
cacccacccccacttccctacccacccactccccctttttggccctggcg
ttctcctgtactggggcatataaagtttgcgtgtccaatgggcctctctt
tccagtgatggccgactaggccatcttttgatacatatgcagctagagtc
aagagctcccaaaaaggttttaaactgtgtgaaagaatgtattttggata
aaagaaagaatgaagagaaatagcagatagagagaattttagggtttgtt
ttatatttatttagagggaaataaactaattacttgatgggtggcagtaa
taacttggtcagtgctgagcaaataattttacatctcttaaatcctccaa
tgttgttcattgtcattgtataatagttaaagagcacattacttcctaga
tgttagcatggtcttttgaatagatgaccatcacaggctctttttatttg
aatgcttggagtggtacctcagggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_81519536_81520720
seq2: B6Ng01-084F02.b_45_1187

seq1  GAATTCATCTGAATAAAAGATTCAAATCAGATGGCAGATTTGAAAGGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTGAATAAAAGATTCAAATCAGATGGCAGATTTGAAAGGTGA  50

seq1  CATTAACCTTTATAAATCATTTCATTTTCTCTCTTATACAGATGAAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACCTTTATAAATCATTTCATTTTCTCTCTTATACAGATGAAGAAT  100

seq1  CTGACACAAAGAAAAATTCAGTGGCATGTTCAAAGTTACACATCAAACGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACAAAGAAAAATTCAGTGGCATGTTCAAAGTTACACATCAAACGG  150

seq1  ATGCTAGAAAAACCTGTTCTTCCAACTTCTGATTCTTTTTTCCAAATACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGAAAAACCTGTTCTTCCAACTTCTGATTCTTTTTTCCAAATACC  200

seq1  ACGTAAGAGAGACTGTTCTGTGTAGAAGAAACAATCACTGCCCTAAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAAGAGAGACTGTTCTGTGTAGAAGAAACAATCACTGCCCTAAATTT  250

seq1  ATTTACATAAGCAGATTCACAGTCAGGTCCTAGCTTACTTGAGTGTTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATAAGCAGATTCACAGTCAGGTCCTAGCTTACTTGAGTGTTACC  300

seq1  CCAAGAAAACAAATGTAGAAGTGTGTAGCTTGTTGCTGTTGTTTTTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAAACAAATGTAGAAGTGTGTAGCTTGTTGCTGTTGTTTTTTCTA  350

seq1  AATCACTTTAAAGGTTATAGCATTTGTAAAGGTTAAATATTTGAGATCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTTTAAAGGTTATAGCATTTGTAAAGGTTAAATATTTGAGATCCG  400

seq1  GAAGTATGAGTTACAACTCTAAAAGCTAAACATAGGACTGTACACTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATGAGTTACAACTCTAAAAGCTAAACATAGGACTGTACACTCCTG  450

seq1  AGTTCAAGGATACTGTCTGCTTTTGTGTTGAGTGAGAGAAAAGTTTACGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAGGATACTGTCTGCTTTTGTGTTGAGTGAGAGAAAAGTTTACGG  500

seq1  GTTCAAATACAGGATGTTGTTGCTGGAATCATTACATTCTATAGGGGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAATACAGGATGTTGTTGCTGGAATCATTACATTCTATAGGGGCTA  550

seq1  AGTTCTCATCGTTTGGCTGGTTGGTTTATTTTTTAAGTTTTTGAGAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCATCGTTTGGCTGGTTGGTTTATTTTTTAAGTTTTTGAGAATAC  600

seq1  CATCATGAGGACCATAACTACTTTGAACACAATTGATAGTATTTGTAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGAGGACCATAACTACTTTGAACACAATTGATAGTATTTGTAGTG  650

seq1  CTTTAGCGTTAATACACTGTTTATTTGAAATTAGATGTTCCTAGAGGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCGTTAATACACTGTTTATTTGAAATTAGATGTTCCTAGAGGTAC  700

seq1  ATGTTTATCTAATCACAAATTTCTACTTGTATTAGGCAAGGAGTGATTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATCTAATCACAAATTTCTACTTGTATTAGGCAAGGAGTGATTGT  750

seq1  GACACTCAGACTGCATTAGAGGGAAAAGGTGCAAGATGCAGAAGCAATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCAGACTGCATTAGAGGGAAAAGGTGCAAGATGCAGAAGCAATGG  800

seq1  CAGTTGTTGTCAGGAAATTAATACCACCAAGAGTGTGCTTACCCTATTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTTGTCAGGAAATTAATACCACCAAGAGTGTGCTTACCCTATTGC  850

seq1  TGCCAGAGGCAAGCCAGATAGATATAAGTGCAGGGAACTAATGGAAAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGAGGCAAGCCAGATAGATATAAGTGCAGGGAACTAATGGAAAATG  900

seq1  TCCTACCACCTGCCTTTTATGGAAGCTGATACATTAAGTAAACAAGCCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCACCTGCCTTTTATGGAAGCTGATACATTAAGTAAACAAGCCTT  950

seq1  CCCTTAGAAACAGGAGTCCTGTGCATGCTTACCT-GGCCTCAAACACCTG  999
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCCTTAGAAACAGGAGTCCTGTGCATGCTTACCTGGGCCTCAAACACCTG  1000

seq1  ATTTTCTTTTTATGAGTCTC-TATCATTTCCATCTGGTTTTTTTGTACTG  1048
      ||||   ||||||||||||| |||||||||||||||| ||||||||||||
seq2  ATTT--CTTTTATGAGTCTCTTATCATTTCCATCTGGGTTTTTTGTACTG  1048

seq1  TTAAGGCCAAGGCCTGGAACTCAAGTTAAGAGCTTTTGCTTAGCTTATAG  1098
      |  | |||||||||| ||||||||| ||||||| |||||||||| |||||
seq2  T--AAGCCAAGGCCT-GAACTCAAG-TAAGAGC-TTTGCTTAGC-TATAG  1092

seq1  TTTCAATCAGCAGTGATTAAAGGAAGGAAGGAAGGAAGAAAGGAAGGGAG  1148
      ||   ||||||||||| |||||||  ||||  ||| |||||| |  ||||
seq2  TT--CATCAGCAGTGA-TAAAGGA--GAAG--AGG-AGAAAGTA--GGAG  1132

seq1  GGAGGGAAGGAGAAAGAAGGAAGGAGGGAGAGAAGGA  1185
      |||||||||||                          
seq2  GGAGGGAAGGA--------------------------  1143

seq1: chr5_81685982_81687051
seq2: B6Ng01-084F02.g_68_1143 (reverse)

seq1  CTCCCTG-GGTGCCACTCCAAGCATTCAAAT-ATAAGAGCCTGTGATGGT  48
      ||||||| ||| ||||||||||||||||||| | ||||||||||||||||
seq2  CTCCCTGAGGTACCACTCCAAGCATTCAAATAAAAAGAGCCTGTGATGGT  50

seq1  CATTCTTATTCAAAAGACCATGCTAACATCTAGGAAGTAATGTGCTCTTT  98
      |||   ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAT--CTATTCAAAAGACCATGCTAACATCTAGGAAGTAATGTGCTCTTT  98

seq1  AACTATTATACCAATGAC-ATGAACAACATTGGAGGATTT-AGAGATGTA  146
      |||||||||| ||||||| ||||||||||||||||||||| |||||||||
seq2  AACTATTATA-CAATGACAATGAACAACATTGGAGGATTTAAGAGATGTA  147

seq1  AAATTATTTGCTCAGCACTGGCCAAGTATTTACTGCCA-CCATC-AGTAA  194
      |||||||||||||||||||| ||||||  ||||||||| ||||| |||||
seq2  AAATTATTTGCTCAGCACTGACCAAGTTATTACTGCCACCCATCAAGTAA  197

seq1  TTAGTTTATTTCCCTCTAAATTATTAT-AGACAAACCCTAAAATTCTCTC  243
      ||||||||||||||||||||| | ||| | ||||||||||||||||||||
seq2  TTAGTTTATTTCCCTCTAAATAAATATAAAACAAACCCTAAAATTCTCTC  247

seq1  TATCTGCTATTTCTCTTCATTCTTTCTTTTATCC-AAATACATTCTTTCA  292
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TATCTGCTATTTCTCTTCATTCTTTCTTTTATCCAAAATACATTCTTTCA  297

seq1  CACAGTTTAAAACCTTTTT-GGAGCTCTTGACTCTAGCTGCATATGTATC  341
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CACAGTTTAAAACCTTTTTGGGAGCTCTTGACTCTAGCTGCATATGTATC  347

seq1  AAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACG  397

seq1  CAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGA  441
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAAACTTTATATGCCCCAGTACAGGAGAACGCCAGGGCCAAAAAGGGGGA  447

seq1  GTGGGTGGGTAGGGAAGTGGGGGTGGGTGGGTATGGGGGACTTTTGGTAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGGGTAGGGAAGTGGGGGTGGGTGGGTATGGGGGACTTTTGGTAT  497

seq1  AGCATTGGAAATGTAAATGAGCTAGATACCTAATAAAAATGGAAAAAAAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGGAAATGTAAATGAGCTAGATACCTAATAAAAATGGAAAAAAAA  547

seq1  GAAAGTAGTTCTTATATAATAATCTATAAGCGTCTCTCTTCTACCTTTCA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTAGTTCTTATATAATAATCTATAAGCGTCTCTCTTCTACCTTTCA  597

seq1  ATATCTGTTGCCAAATGCCTGTTCAATGACTGCGCCTATAGCTTTCAAAG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGTTGCCAAATGCCTGTTCAATGACTGCGCCTATAGCTTTCAAAG  647

seq1  AACATTATTGTCTTCGTACAAATATATCTACCTCATATATTTCTTGGCTG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTATTGTCTTCGTACAAATATATCTACCTCATATATTTCTTGGCTG  697

seq1  ATCATATCATAATCATCGTATTAAGATTCACATCACACTATTATCATGTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATCATAATCATCGTATTAAGATTCACATCACACTATTATCATGTT  747

seq1  TCAATTGCTGCCTGCTGTAGGCCTTTTATTGTCATTGTCTCCATGCCTTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGCTGCCTGCTGTAGGCCTTTTATTGTCATTGTCTCCATGCCTTT  797

seq1  TTTTTAACCTGTATCTATGTTATCAGTTAAGTACTTAAGATCTTTTACAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAACCTGTATCTATGTTATCAGTTAAGTACTTAAGATCTTTTACAA  847

seq1  CTCAGCCATTCCCAGTGTAACACAGCTTATAAGCATCCTTGCAAATTTCT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCATTCCCAGTGTAACACAGCTTATAAGCATCCTTGCAAATTTCT  897

seq1  CTTACTTGTTGCTACTGGATAAGCTTTCTAAAACTAATTATGAACTGCAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTGTTGCTACTGGATAAGCTTTCTAAAACTAATTATGAACTGCAA  947

seq1  CTTCATATTTCAATTGTCTTCATTATCTTCATATTTTACAAGATTACAAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATATTTCAATTGTCTTCATTATCTTCATATTTTACAAGATTACAAA  997

seq1  AGCTACTTCTGTGTGGTTTGGTAGTCACTCCCTGCCATAATGCATGCCAA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTTCTGTGTGGTTTGGTAGTCACTCCCTGCCATAATGCATGCCAA  1047

seq1  CTGTTGCTGGACAGTCCAGTAATGAATTC  1070
      |||||||||||||||||||||||||||||
seq2  CTGTTGCTGGACAGTCCAGTAATGAATTC  1076