BAC Information

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BAC

Clone NameB6Ng01-085A15
Chromosome5 (Build37)
Map Location 103,178,809 - 103,343,327
singlet/doubletdoublet
Overlap geneArhgap24, Mapk10
Upstream geneCds1, Wdfy3, EG666515, EG666527, LOC625780
Downstream geneLOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049, Ptpn13, Slc10a6, 1700016H13Rik, Aff1, Klhl8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085A15.bB6Ng01-085A15.g
ACCDH898822DH898823
length1,0451,084
definitionDH898822|Mus musculus domesticus DNA, BAC clone: B6Ng01-085A15, 5' end.DH898823|Mus musculus domesticus DNA, BAC clone: B6Ng01-085A15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,342,280 - 103,343,327)(103,178,809 - 103,179,907)
sequence
gaattctttgttcttgttgattaatcgataggtattttaaatattagtag
cctcttctacaaagcatatacttgtttcagatgtatacgttgtgttaacc
tatcacttatacacggagaatatagatggaagataaaggagaatggttgt
ttccagactgctaagttttggtctctggggcctttgacccatcttccctt
ccttgttctggcaggtagggactcacagccagtctttgctgagggtgccc
cgccagagtttcagacacttgcagcagaatgaaagatgctttcaaattaa
taacccaatattcacaggtcctaaacaactgagtctgctggcaggacacc
caagctcagagggcatgctctggcctatctttccttctgctcgccactaa
catttctctagagtcttggcttttcaacatcgatctgcattttggtattc
catttaatgattatataatactctgtgttttatatacttacatttcctta
gagctgtagtcatcacaaattctgaccgctgggctttgccttggcttatt
tctggtctaagaccatcatgtgtgcttgttttacctccttcatcgaaagc
ttcaggatcaggccagtggttttctgtcccctgaatgactatagagcccc
tagggtcttacataaggatgcaacggccttggcttcacccaagctcagta
tcgttacaacactgggacttagaggtggatggtgtgagcagtgagtgatt
tctaatccagagcgaaattgataaccattaacctgtgaatagatgtgaca
tgcgatggggtttctgaattgtgtctccttgagttccaccatcaagttca
gttcaatgaagttctgccaaagagatagaagagacatttcttcttgttat
acccatccccacactgaacatcctgagcacatgggtctggttccagattt
agtcatgttggtctcattttctagcacagtgcagcagtgaacagcagtga
gagtctccctcattctcgtctgtcaacgacatctcctccatgtca
gaattcctggggagccagcattacacagaaaaagtcccaccccctctcaa
aaattattctcagcaacatgtaaatatttaagtgttaactaaataatact
taaacatcaaaaacttagataacattaaatactaagtgcaaatatttaag
catcatgaattacatcagttaagattatactatagatatgtgccactgaa
ggaagtttttagggagcaagtctattatttgaggtatataacattctcac
aggtatgtcagttatctcctaaaacattttttttaaatcagagactctcc
tggaaactcaagaagacttagctataaatcgctgatctgattaaagcatg
cagaaaagagagggagagaaattaaaaagtaaacctttaaccagttttct
tattgaattattgttgtttttattcattcacttggatagactctagtttt
aaatttccatttgcaaaatgagaatgctagcataattcaggaattaaaag
aaagttcatgactattctaaaacatggagtctggggaacgtagagttttc
cagagtcctcattaatctttataaagctggaagtcgttcagccaatagaa
agtaaacacacagaatgcatcttttaacttaataggagacatgtgtccca
ctgttctgagagaactccgtgagtttttcaaccacatctgaggagcccag
ggtccaggaccccttcagtgggtactgaggagctgtcttcacggggcact
gttggcccgggtaaaactgtgagcttgcagcagcaactttcatttgacgg
ccgatcccgtgctgaacagttctattcttttctaattatcttaagtcaga
cccggaaaatcaaataacggggatgctgaataacaaactgcaaccttgcc
attattattgaatcttacctgagcctccttttctacccttagagcaagca
gtgtgctaaatttctttagtgattctcagcgatctgctgaatgccctgtg
cgaccctgcatgcatctaatgatggcacactactgctctgtgcatcgtga
ctagagcttggggcagtcacgaggagctcagtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_103342280_103343327
seq2: B6Ng01-085A15.b_45_1088 (reverse)

seq1  GACATGGAGGAGATGTCGTTGACAGACGAGGATGGAGGGAGACTCTCACT  50
      |||||||||||||||||||||||||||||| || ||||||||||||||||
seq2  GACATGGAGGAGATGTCGTTGACAGACGAGAAT-GAGGGAGACTCTCACT  49

seq1  GCTGTTCACTGCTGCACCTGTGCTAAGAAAATGAAGACCAACATGACTAA  100
      |||||||||||||||| ||||||| |||||||| ||||||||||||||||
seq2  GCTGTTCACTGCTGCA-CTGTGCT-AGAAAATG-AGACCAACATGACTAA  96

seq1  ATCTGGAACCAGACCCATGTGCTCAGGATGTTCAGTGTGGGGATGGGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGAACCAGACCCATGTGCTCAGGATGTTCAGTGTGGGGATGGGTAT  146

seq1  AACAAGAAGAAATGTCTCTTCTATCTCTTTGGCAGACCTTCATTGAACTG  200
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AACAAGAAGAAATGTCTCTTCTATCTCTTTGGCAGAACTTCATTGAACTG  196

seq1  AACTTGATGGTGGAACTCAAGGAGACACAATTCAGAAACCCCATCGCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGATGGTGGAACTCAAGGAGACACAATTCAGAAACCCCATCGCATG  246

seq1  TCACATCTATTCACAGGTTAATGGTTATCAATTTCGCTCTGGATTAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCTATTCACAGGTTAATGGTTATCAATTTCGCTCTGGATTAGAAA  296

seq1  TCACTCACTGCTCACACCATCCACCTCTAAGTCCCAGTGTTGTAACGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCACTGCTCACACCATCCACCTCTAAGTCCCAGTGTTGTAACGATA  346

seq1  CTGAGCTTGGGTGAAGCCAAGGCCGTTGCATCCTTATGTAAGACCCTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTTGGGTGAAGCCAAGGCCGTTGCATCCTTATGTAAGACCCTAGG  396

seq1  GGCTCTATAGTCATTCAGGGGACAGAAAACCACTGGCCTGATCCTGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTATAGTCATTCAGGGGACAGAAAACCACTGGCCTGATCCTGAAGC  446

seq1  TTTCGATGAAGGAGGTAAAACAAGCACACATGATGGTCTTAGACCAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGATGAAGGAGGTAAAACAAGCACACATGATGGTCTTAGACCAGAAA  496

seq1  TAAGCCAAGGCAAAGCCCAGCGGTCAGAATTTGTGATGACTACAGCTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCAAGGCAAAGCCCAGCGGTCAGAATTTGTGATGACTACAGCTCTA  546

seq1  AGGAAATGTAAGTATATAAAACACAGAGTATTATATAATCATTAAATGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGTAAGTATATAAAACACAGAGTATTATATAATCATTAAATGGA  596

seq1  ATACCAAAATGCAGATCGATGTTGAAAAGCCAAGACTCTAGAGAAATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAAATGCAGATCGATGTTGAAAAGCCAAGACTCTAGAGAAATGTT  646

seq1  AGTGGCGAGCAGAAGGAAAGATAGGCCAGAGCATGCCCTCTGAGCTTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCGAGCAGAAGGAAAGATAGGCCAGAGCATGCCCTCTGAGCTTGGG  696

seq1  TGTCCTGCCAGCAGACTCAGTTGTTTAGGACCTGTGAATATTGGGTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGCCAGCAGACTCAGTTGTTTAGGACCTGTGAATATTGGGTTATT  746

seq1  AATTTGAAAGCATCTTTCATTCTGCTGCAAGTGTCTGAAACTCTGGCGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAAAGCATCTTTCATTCTGCTGCAAGTGTCTGAAACTCTGGCGGG  796

seq1  GCACCCTCAGCAAAGACTGGCTGTGAGTCCCTACCTGCCAGAACAAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCTCAGCAAAGACTGGCTGTGAGTCCCTACCTGCCAGAACAAGGAA  846

seq1  GGGAAGATGGGTCAAAGGCCCCAGAGACCAAAACTTAGCAGTCTGGAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGATGGGTCAAAGGCCCCAGAGACCAAAACTTAGCAGTCTGGAAAC  896

seq1  AACCATTCTCCTTTATCTTCCATCTATATTCTCCGTGTATAAGTGATAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTCTCCTTTATCTTCCATCTATATTCTCCGTGTATAAGTGATAGG  946

seq1  TTAACACAACGTATACATCTGAAACAAGTATATGCTTTGTAGAAGAGGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACAACGTATACATCTGAAACAAGTATATGCTTTGTAGAAGAGGCT  996

seq1  ACTAATATTTAAAATACCTATCGATTAATCAACAAGAACAAAGAATTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATATTTAAAATACCTATCGATTAATCAACAAGAACAAAGAATTC  1044

seq1: chr5_103178809_103179907
seq2: B6Ng01-085A15.g_71_1154

seq1  GAATTCCTGGGGAGCCAGCATTACACAGAAAAAGTCCCACCCCCTCTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGGAGCCAGCATTACACAGAAAAAGTCCCACCCCCTCTCAA  50

seq1  AAATTATTCTCAGCAACATGTAAATATTTAAGTGTTAACTAAATAATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTCTCAGCAACATGTAAATATTTAAGTGTTAACTAAATAATACT  100

seq1  TAAACATCAAAAACTTAGATAACATTAAATACTAAGTGCAAATATTTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATCAAAAACTTAGATAACATTAAATACTAAGTGCAAATATTTAAG  150

seq1  CATCATGAATTACATCAGTTAAGATTATACTATAGATATGTGCCACTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGAATTACATCAGTTAAGATTATACTATAGATATGTGCCACTGAA  200

seq1  GGAAGTTTTTAGGGAGCAAGTCTATTATTTGAGGTATATAACATTCTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTTTTAGGGAGCAAGTCTATTATTTGAGGTATATAACATTCTCAC  250

seq1  AGGTATGTCAGTTATCTCCTAAAACATTTTTTTTAAATCAGAGACTCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGTCAGTTATCTCCTAAAACATTTTTTTTAAATCAGAGACTCTCC  300

seq1  TGGAAACTCAAGAAGACTTAGCTATAAATCGCTGATCTGATTAAAGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACTCAAGAAGACTTAGCTATAAATCGCTGATCTGATTAAAGCATG  350

seq1  CAGAAAAGAGAGGGAGAGAAATTAAAAAGTAAACCTTTAACCAGTTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGAGAGGGAGAGAAATTAAAAAGTAAACCTTTAACCAGTTTTCT  400

seq1  TATTGAATTATTGTTGTTTTTATTCATTCACTTGGATAGACTCTAGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAATTATTGTTGTTTTTATTCATTCACTTGGATAGACTCTAGTTTT  450

seq1  AAATTTCCATTTGCAAAATGAGAATGCTAGCATAATTCAGGAATTAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCATTTGCAAAATGAGAATGCTAGCATAATTCAGGAATTAAAAG  500

seq1  AAAGTTCATGACTATTCTAAAACATGGAGTCTGGGGAACGTAGAGTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCATGACTATTCTAAAACATGGAGTCTGGGGAACGTAGAGTTTTC  550

seq1  CAGAGTCCTCATTAATCTTTATAAAGCTGGAAGTCGTTCAGCCAATAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCCTCATTAATCTTTATAAAGCTGGAAGTCGTTCAGCCAATAGAA  600

seq1  AGTAAACACACAGAATGCATC-TTTAACTTAATAGGAGACATGTGTCCCA  649
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGTAAACACACAGAATGCATCTTTTAACTTAATAGGAGACATGTGTCCCA  650

seq1  CTGTTCTGAGAGAACTCCGTGAGTTTTTCAACCACATCTGAGGAGCCCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTGAGAGAACTCCGTGAGTTTTTCAACCACATCTGAGGAGCCCAG  700

seq1  GGTCCAGGACCCCTTCAGTGGGTACTGAGGAGCTGTCTTCACGGGGCACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGGACCCCTTCAGTGGGTACTGAGGAGCTGTCTTCACGGGGCACT  750

seq1  GTTGGCCCGGGTAAAACTGTGAGCTTGCAGCAGCAACTTTCATTTGACGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCCCGGGTAAAACTGTGAGCTTGCAGCAGCAACTTTCATTTGACGG  800

seq1  CCGATCCCGTGCTGAACAGTTCTATTGCTTTTCTAATTATCTTAAGTCAG  849
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCGATCCCGTGCTGAACAGTTCTATT-CTTTTCTAATTATCTTAAGTCAG  849

seq1  ACCCGGAAAATCAAATAACGGGGATGCTGAATAAACAAAACTGCAACCTT  899
      ||||||||||||||||||||||||||||||||||   |||||||||||||
seq2  ACCCGGAAAATCAAATAACGGGGATGCTGAATAA--CAAACTGCAACCTT  897

seq1  GCCATTATTATTGAATCTTACCTGAGCCTCCTTTTCTACCCTTAGAGCAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCCATTATTATTGAATCTTACCTGAGCCTCCTTTTCTACCCTTAGAGCAA  947

seq1  GCAGTGTGCTAAATTTCTTTAGTGAATTCTCAGCGATCCTGCTGACATGC  999
      |||||||||||||||||||||||| |||||||||||| ||||||| ||||
seq2  GCAGTGTGCTAAATTTCTTTAGTG-ATTCTCAGCGAT-CTGCTGA-ATGC  994

seq1  CCTGTGCGGACCCTGCATAGCATCCTAATGAAGGGCACACTACTGCCTCT  1049
      ||||||| |||||||||| |||| |||||| | |||||||||||| ||||
seq2  CCTGTGC-GACCCTGCAT-GCAT-CTAATG-ATGGCACACTACTG-CTCT  1039

seq1  GTGCCATCGTGACTAGAGGCTTTGGGTGCAGTCACAGAGGAGCTCAGTCC  1099
      ||| ||||||||||||| ||||  || |||||||| ||||||||||||||
seq2  GTG-CATCGTGACTAGA-GCTT--GGGGCAGTCAC-GAGGAGCTCAGTCC  1084