BAC Information

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BAC

Clone NameB6Ng01-085M17
Chromosome5 (Build37)
Map Location 83,123,688 - 83,124,761
singlet/doubletsinglet
Overlap genenone
Upstream geneLphn3, EG433912
Downstream geneLOC100039434, Srd5a2l2, LOC100039608
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085M17.bB6Ng01-085M17.g
ACCDH899364DH899365
length1,0751,237
definitionDH899364|Mus musculus domesticus DNA, BAC clone: B6Ng01-085M17, 5' end.DH899365|Mus musculus domesticus DNA, BAC clone: B6Ng01-085M17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttcttacagcatcattaagggtgtcctgtgttttatccttcat
tttatcattctgactgctttctctttatcctggtgcgtctgcctaaaggt
ttgtaaattttattgaacgtcttctttttactactggttctctattttat
gcttctgttgcatatattttagcatttgtgatctctgtctttctgacagt
tatgtatttatatcactctccgttctttttgtttgtttattagacttaaa
tgccaccacaaccgtgtgagaccctgtatttatttcttacataggtggta
tctgctaacataaactagagtccacatatcactcaatctataccctataa
gatttgttatgtggaggctggggagatcgaccctttgatgaagtgcttta
tacaaataatgtggattaaaatattaaaatttagatctccagagtctgga
ataaaaatttggactaggtgcatgctgataacctcagtgctgagaaacag
tcaggatgattcctgggaaacagctgtttattaagtctagtcaagtgggg
agctttcatttcaatgagacatcctgattcaaaaacattagttcgaaaag
tgagaagtaaaagatctctagatgtcaatctctggctctacatgcaccaa
tactgacaagcgtgactacttgtatataggtgcgtgtgcgggcgcagaca
cacacacacacacacacacacacacacacacacacactttatatatgcat
tttgtgtgtcctttacatctctctgtgtagtttactattcttacttccta
ctagtaattcagctcactgtgcagtgttccttcacttaatattgaatcct
taacagcacattatccaccaacatccttacccaaaccctcgctaccataa
gtcttgtagtgatagcatcttttaactttatatgtttatttcttattgaa
tgtagattcttctctcataacaattatctcaatacagttttcctttctaa
cccctccctccttctagcttcaattctaaccttccctctttgccgaatct
atttcccccttttctcttcagaaat
gaattcctacgcctgataaacctcttcaatgaagtagctggatataaaat
taacccaaagaagtcaatggcctttctctacacaaaggataaaaagggtg
aggaagaaattagggaaacaacattcttctcaatagtcacaaataatata
aaataagttggcatgactctaactaaggaagtgaaaaatctgcataataa
gaacttcaagtctctgaagaaagaaattaaagatctcagaagatggaaag
atctcccatgctcatggattggcaggatcaatatagtaaaaatggctatc
ttgccaaaagaaatctacagattcaatgcaatccccatcaaaattccaac
tcaattcttcaatgaattagaaagggtaatctgcaaattcatctggagta
acaacaaacctaggatagcaaaaattctgctcaaggataaaaaaatctct
ggtggaatcaccatatctgacctaaagctatactaaagagcaattgtgat
aaaaactgcgtggtactagtatagcaacagacaaatagaccgatggaata
gaattgaagacctagaaatgaacccacacacctatggtcacttgatattt
gacaaaggagcaaaaaccatccagtgggaaaaggacagcatcttcaaaaa
atggtgctggcacaactggcagttatgtagaagaatgcgaattgatccat
tcctatctccttgtactaaggtcaaatctaagtggattaaggaactccac
ataaaaactgagacactgaaacttatagaggggcaagtggggaaaagcct
caaaaatatgcgtacagggcaaacatttctgaatagaacagcaatggcct
gtgctgtgagatcagaatcgacaaatgggacctcataaattgcaaagctt
ctgcaaggcaaagacactgttaataagaaaaaaatgccaccacagagtgg
gaaaggatctttactattctaaatcagagaggggactatatccatattat
aagaacccaagaagttgacttcagaaaatcaaataaccccatttaaaaat
ggagctctaagtctaacaagaattctacctgaggaaaaccgaaatgctga
aagcacctgaaaaatggttcaacattcttatcatcagtaaatgcaatcta
acaaccctgagattctcactcccagtcgatgactagatcaaattcagttc
agcaaagcctgtttaatatcctggacgaggtacctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_83123688_83124761
seq2: B6Ng01-085M17.b_48_1122 (reverse)

seq1  ATTTCTGAAGAGGAAAGAGGGGGAATGGATCTGGCAGAGAGGGAAGG-TA  49
      |||||||||||| |||| |||| ||| |||  |||| |||||||||| ||
seq2  ATTTCTGAAGAGAAAAG-GGGGAAATAGATTCGGCAAAGAGGGAAGGTTA  49

seq1  GAA-TGGAGCTAGAAGGAGGGAGGGG-TAGGAAGGGAAACTGTGATTGAG  97
      ||| || ||||||||||||||||||| ||| |||| ||||||| ||||||
seq2  GAATTGAAGCTAGAAGGAGGGAGGGGTTAGAAAGGAAAACTGT-ATTGAG  98

seq1  ATATATTG-TATGAGAGAAGAATCTACATTCAATAAGAAAATAAACATAT  146
      ||| |||| |||||||||||||||||||||||||||| ||||||||||||
seq2  ATA-ATTGTTATGAGAGAAGAATCTACATTCAATAAG-AAATAAACATAT  146

seq1  AAAGTTAAAAGATGCTATCACTACAAGACCTATGGTAGCGAGGGTTTGGG  196
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAAGTTAAAAGATGCTATCACTACAAGACTTATGGTAGCGAGGGTTTGGG  196

seq1  TAAGGATGTTGGTGGATAATGTGCTGTTAAGGATTCAATATTAAGTGAAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATGTTGGTGGATAATGTGCTGTTAAGGATTCAATATTAAGTGAAG  246

seq1  GAACACTGCACAGTGAGCTGAATTACTAGTAGGAAGTAAGAATAGTAAAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTGCACAGTGAGCTGAATTACTAGTAGGAAGTAAGAATAGTAAAC  296

seq1  TACACAGAGAGATGTAAAGGACACAC-AAATGCATATATAAAGTGTGTGT  345
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TACACAGAGAGATGTAAAGGACACACAAAATGCATATATAAAGTGTGTGT  346

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCACGCACACGCAC  395
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGCGCCCGCACACGCAC  396

seq1  CTATATACAAGTAGTCACGCTTGTCAGTATTGGTGCATGTAGAGCCAGAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATACAAGTAGTCACGCTTGTCAGTATTGGTGCATGTAGAGCCAGAG  446

seq1  ATTGACATCTAGAGATCTTTTACTTCTCACTTTTCGAACTAATGTTTTTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACATCTAGAGATCTTTTACTTCTCACTTTTCGAACTAATGTTTTTG  496

seq1  AATCAGGATGTCTCATTGAAATGAAAGCTCCCCACTTGACTAGACTTAAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGATGTCTCATTGAAATGAAAGCTCCCCACTTGACTAGACTTAAT  546

seq1  AAACAGCTGTTTCCCAGGAATCATCCTGACTGTTTCTCAGCACTGAGGTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTGTTTCCCAGGAATCATCCTGACTGTTTCTCAGCACTGAGGTT  596

seq1  ATCAGCATGCACCTAGTCCAAATTTTTATTCCAGACTCTGGAGATCTAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCATGCACCTAGTCCAAATTTTTATTCCAGACTCTGGAGATCTAAA  646

seq1  TTTTAATATTTTAATCCACATTATTTGTATAAAGCACTTCATCAAAGGGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATATTTTAATCCACATTATTTGTATAAAGCACTTCATCAAAGGGT  696

seq1  CGATCTCCCCAGCCTCCACATAACAAATCTTATAGGGTATAGATTGAGTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCTCCCCAGCCTCCACATAACAAATCTTATAGGGTATAGATTGAGTG  746

seq1  ATATGTGGACTCTAGTTTATGTTAGCAGATACCACCTATGTAAGAAATAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGGACTCTAGTTTATGTTAGCAGATACCACCTATGTAAGAAATAA  796

seq1  ATACAGGGTCTCACACGGTTGTGGTGGCATTTAAGTCTAATAAACAAACA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGGTCTCACACGGTTGTGGTGGCATTTAAGTCTAATAAACAAACA  846

seq1  AAAAGAACGGAGAGTGATATAAATACATAACTGTCAGAAAGACAGAGATC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACGGAGAGTGATATAAATACATAACTGTCAGAAAGACAGAGATC  896

seq1  ACAAATGCTAAAATATATGCAACAGAAGCATAAAATAGAGAACCAGTAGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGCTAAAATATATGCAACAGAAGCATAAAATAGAGAACCAGTAGT  946

seq1  AAAAAGAAGACGTTCAATAAAATTTACAAACCTTTAGGCAGACGCACCAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAGACGTTCAATAAAATTTACAAACCTTTAGGCAGACGCACCAG  996

seq1  GATAAAGAGAAAGCAGTCAGAATGATAAAATGAAGGATAAAACACAGGAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGAGAAAGCAGTCAGAATGATAAAATGAAGGATAAAACACAGGAC  1046

seq1  ACCCTTAATGATGCTGTAAGAAAGAATTC  1074
      |||||||||||||||||||||||||||||
seq2  ACCCTTAATGATGCTGTAAGAAAGAATTC  1075