BAC Information

Click to search

BAC

Clone NameB6Ng01-086K19
Chromosome5 (Build37)
Map Location 90,847,330 - 91,020,736
singlet/doubletdoublet
Overlap geneAlb1, Afp, Afm, LOC100040105, LOC622307
Upstream geneGc, LOC622870, Npffr2, LOC631105, Adamts3, EG665733, Cox18, Ankrd17
Downstream geneRassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg, Btc, 9130213B05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086K19.bB6Ng01-086K19.g
ACCDH900009DH900010
length5901,076
definitionDH900009|Mus musculus domesticus DNA, BAC clone: B6Ng01-086K19, 5' end.DH900010|Mus musculus domesticus DNA, BAC clone: B6Ng01-086K19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,020,141 - 91,020,736)(90,847,330 - 90,848,416)
sequence
aggccatgtcatctaagctgacgtttccctagctctgggtcctaggaatt
taggtaaaagcagatatggtgacagagagtacaaattaaaatttcttcat
agtaatttataatagaaagtgaagataatgtccaagtgcaacaatagtaa
aaggttagagtcatataacagaacattacaggatcattaaaatgccattg
tgaagaataactagtgacagaatgtatataaaatatacagtgtaatgttt
taaagaaaaaatgtaaaatgatgggggtagcaggcagcttttggcgtatg
ttactctttgctgtatctcagcctttgtacctataattttatttataatt
tcagtgttacgatttctgtcttcacctgaaagtgtccttcattttgcttt
tgtaacaggggtttcagattccttggctataactcacaaatcggtggggt
gagcttccatcgtaaaagctgagtgagaagtctacctaatgagagatgct
tggtcttgggaagccgggagacagctctgtagttgcctgctaggtctcct
ttcattagactcagttctgaatcatggggggggggggggg
gaattctttgtttagctctgtaccccatttttaatagggttatttggttt
tctggaacccaacttcttgagctctttgtctatattgaacattagcctcc
tatcggatttaggattggtaaagatcttttccgaatctgttggttgccgt
tttgtcttttgctttgcagaaactttacaactttatgaggtcccatttgt
cgattcttgatcttgtaacacaagccgttggtgttctttttttttttttt
taagtttttcatttcagatttattgagtacctcctaaattgataactact
taaaaatatacaaagaaaaggtattcacttgactgcaacttaaaggatac
agttttttttttttgcaatattcttaaatcttttttttaaattaggtatt
ttcctcgtttacattttcaatgctatcccaaaggtcccccatacccaccc
ccccaatcccctacccacccactccccctttttggccctggcgttcccct
gtactggggcatataaagtttgcaagtccaatgggcctcactttgcagtg
atggccaactaggccatcttttgatacatatgcagctagagacaagagga
atggatacagaaaatgtggtacatttacacaatggaatgctactcagcta
ttaaaaaaatgaatttatgaaattcctaagcaaatggatggacctggagg
gtatcatcctgagtgaggtaacccaatcacaaaggaactcgcacaatatg
tactcaccgataagtgaatattagcccagaaacttaggatacccaaaata
taagatacaacttgccaaacgcatgaaattcaagaagaacgaagaccaaa
gtgtggacactttaccctttcttagaaatggggacaaaacacccatggaa
gtgttacagagacaaaatttggagctgtgacgaaaggatggaccatctag
tgattgccgtggtgttcttatgtagttctatgtagttgttttttcttatg
caggtctgtgtcaagctttttttctatttagcttaaggcttcaactgcta
atgctttggaggattctatgtgaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_91020141_91020736
seq2: B6Ng01-086K19.b_47_642 (reverse)

seq1  CCCCCCCCCCCCCCCATGATTCAGAACTGAGTCTAATGAAAGGAGACCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCCCCATGATTCAGAACTGAGTCTAATGAAAGGAGACCTA  50

seq1  GCAGGCAACTACAGAGCTGTCTCCCGGCTTCCCAAGACCAAGCATCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAACTACAGAGCTGTCTCCCGGCTTCCCAAGACCAAGCATCTCTC  100

seq1  ATTAGGTAGACTTCTCACTCAGCTTTTACGATGGAAGCTCACCCCACCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTAGACTTCTCACTCAGCTTTTACGATGGAAGCTCACCCCACCGA  150

seq1  TTTGTGAGTTATAGCCAAGGAATCTGAAACCCCTGTTACAAAAGCAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAGTTATAGCCAAGGAATCTGAAACCCCTGTTACAAAAGCAAAAT  200

seq1  GAAGGACACTTTCAGGTGAAGACAGAAATCGTAACACTGAAATTATAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGACACTTTCAGGTGAAGACAGAAATCGTAACACTGAAATTATAAAT  250

seq1  AAAATTATAGGTACAAAGGCTGAGATACAGCAAAGAGTAACATACGCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATAGGTACAAAGGCTGAGATACAGCAAAGAGTAACATACGCCAA  300

seq1  AAGCTGCCTGCTACCCCCATCATTTTACATTTTTTCTTTAAAACATTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCCTGCTACCCCCATCATTTTACATTTTTTCTTTAAAACATTACA  350

seq1  CTGTATATTTTATATACATTCTGTCACTAGTTATTCTTCACAATGGCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATATTTTATATACATTCTGTCACTAGTTATTCTTCACAATGGCATT  400

seq1  TTAATGATCCTGTAATGTTCTGTTATATGACTCTAACCTTTTACTATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGATCCTGTAATGTTCTGTTATATGACTCTAACCTTTTACTATTGT  450

seq1  TGCACTTGGACATTATCTTCACTTTCTATTATAAATTACTATGAAGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTGGACATTATCTTCACTTTCTATTATAAATTACTATGAAGAAAT  500

seq1  TTTAATTTGTACTCTCTGTCACCATATCTGCTTTTACCTAAATTCCTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTGTACTCTCTGTCACCATATCTGCTTTTACCTAAATTCCTAGG  550

seq1  ACCCAGAGCTAGGGAAACGTCAGCTTAGATGACATGGCCTGAATTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAGCTAGGGAAACGTCAGCTTAGATGACATGGCCTGAATTC  596

seq1: chr5_90847330_90848416
seq2: B6Ng01-086K19.g_69_1144

seq1  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATAGGGTTATTTGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATAGGGTTATTTGGTTT  50

seq1  TCTGGAACCCAACTTCTTGAGCTCTTTGTCTATATTGAACATTAGCCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAACCCAACTTCTTGAGCTCTTTGTCTATATTGAACATTAGCCTCC  100

seq1  TATCGGATTTAGGATTGGTAAAGATCTTTTCCGAATCTGTTGGTTGCCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGGATTTAGGATTGGTAAAGATCTTTTCCGAATCTGTTGGTTGCCGT  150

seq1  TTTGTCTTTTGCTTTGCAGAAACTTTACAACTTTATGAGGTCCCATTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTTTGCTTTGCAGAAACTTTACAACTTTATGAGGTCCCATTTGT  200

seq1  CGATTCTTGATCTTGTAACACAAGCCGTTGGTGTTCTTTTTTTTTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTCTTGATCTTGTAACACAAGCCGTTGGTGTTCTTTTTTTTTTTTTT  250

seq1  TAAGTTTTTCATTTCAGATTTATTGAGTACCTCCTAAATTGATAACTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTTTCATTTCAGATTTATTGAGTACCTCCTAAATTGATAACTACT  300

seq1  TAAAAATATACAAAGAAAAGGTATTCACTTGACTGCAACTTAAAGGATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATATACAAAGAAAAGGTATTCACTTGACTGCAACTTAAAGGATAC  350

seq1  AGTTTTTTTTTTTTGCAATATTCTTAAATCTTTTTTTTAAATTAGGTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTTTTTTTTGCAATATTCTTAAATCTTTTTTTTAAATTAGGTATT  400

seq1  TTCCTCGTTTACATTTTCAATGCTATCCCAAAGGTCCCCCATACCCACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCGTTTACATTTTCAATGCTATCCCAAAGGTCCCCCATACCCACCC  450

seq1  CCCCAATCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCT  500

seq1  GTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCACTTTGCAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCACTTTGCAGTG  550

seq1  ATGGCCAACTAGGCCATCTTTTGATACATATGCAGCTAGAGACAAGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCAACTAGGCCATCTTTTGATACATATGCAGCTAGAGACAAGAGGA  600

seq1  ATGGATACAGAAAATGTGGTACATTTACACAATGGAATGCTACTCAGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATACAGAAAATGTGGTACATTTACACAATGGAATGCTACTCAGCTA  650

seq1  TTAAAAAAATGAATTTATGAAATTCCTAAGCAAATGGATGGACCTGGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAATGAATTTATGAAATTCCTAAGCAAATGGATGGACCTGGAGG  700

seq1  GTATCATCCTGAGTGAGGTAACCCAATCACAAAGGAACTCGCACAATATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATCCTGAGTGAGGTAACCCAATCACAAAGGAACTCGCACAATATG  750

seq1  TACTCACCGATAAGTGAATATTAGCCCAGAAACTTAGGATACCCAAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACCGATAAGTGAATATTAGCCCAGAAACTTAGGATACCCAAAATA  800

seq1  TAAGATACAACTTGCCAAACGCATGAAATTCAAGAAGAACGAAGACCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATACAACTTGCCAAACGCATGAAATTCAAGAAGAACGAAGACCAAA  850

seq1  GTGTGGACACTTTACCCTTTCTTAGAAATGGGGACAAAACACCCATGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGACACTTTACCCTTTCTTAGAAATGGGGACAAAACACCCATGGAA  900

seq1  GGTGTTACAGAGACAAAATTTGGAGCTGTGACGAAAGGATGGACCATCTA  950
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GTGTTACAGAGACAAAATTTGGAGCTGTGACGAAAGGATGGACCATCTA  949

seq1  GTGATTGCCGTTGGTGTTCTTATGTAGTTCTTATGTAGTTGTTTTTTCTT  1000
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  GTGATTGCCG-TGGTGTTCTTATGTAGTTC-TATGTAGTTGTTTTTTCTT  997

seq1  ATGCAGGTCTGTGTTCAGGCTTTTTTTTCCTATTTAGCTTAAGGCTTCCA  1050
      ||||||||||||| ||| |||||||||  |||||||||||||||||| ||
seq2  ATGCAGGTCTGTG-TCAAGCTTTTTTT--CTATTTAGCTTAAGGCTT-CA  1043

seq1  ACTGCTATTGCTTTTGGAGGAGTTTCTATGTAGAACT  1087
      ||||||| ||| |||||||||  |||||||| |||||
seq2  ACTGCTAATGC-TTTGGAGGA--TTCTATGT-GAACT  1076