BAC Information

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BAC

Clone NameB6Ng01-087J21
Chromosome5 (Build37)
Map Location 85,742,915 - 85,870,446
singlet/doubletdoublet
Overlap genenone
Upstream geneEpha5
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087J21.bB6Ng01-087J21.g
ACCDH900692DH900693
length1,0701,176
definitionDH900692|Mus musculus domesticus DNA, BAC clone: B6Ng01-087J21, 5' end.DH900693|Mus musculus domesticus DNA, BAC clone: B6Ng01-087J21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,869,376 - 85,870,446)(85,742,915 - 85,744,106)
sequence
gaattctgtttattatattacatttaccatatattggaatactctggttg
tgaaagccagtttgaattccagtcaccttgttttaatcaatttcaaaatg
tctactctaaaacagactaactactggttgtatttggttggtacctgctg
cctagttacagatatttgtgaaatttcatctctgggcttttcatcagagt
gctcagctattttctaaatgtgtaaatctacctgccacttaatttaatgc
tacagaatttgagcacaaatatacattgcaccattactagagggataccc
aagaaagacttattcagccaattcagtgaagaccatggggtttgttctca
tgagctcgatgatacgctgtcctctactatgccttaattttttccctaag
attgatagaatgaggaaaatgagaaagtgctatgagatatgagactgaac
agacacaattacatttggctatatggttaatcagtgaaattagggttctt
ttgaagggtgacttggtagtttgattttattcttcacatacatttatccg
tgaaatgcatgagcaagaagaatctagacagagaagcagcctcctttgat
atatactttaaaattttaaatgcatagaattttagaacttaaagaattag
gcaccactcagaaaggaacagtggggtttttgaagatcagtggcagagca
aagtggacagagaaaaaccaagtggtcttaacattgtccatagaaatata
gacaactgaggaaagctgacattgggcatggtcgtctttcccagggaaga
gcacactaattggttatccagtgccaaaatgtcagcccaaaaaccataca
tacaaataacattatacagactgaataggttatacttaggattatatatg
taagtattatatatatatatatatatatatatatatatacattcaataac
aattaatgatagagaggccacaaagttgaaaggataccagagacagtatg
tgagaaggtttgttgggaagaaaagaaaaggggcaaaggtgtaattattt
ttatatctccaaaataaaat
gaattccactcaccaatgatgccaagatcctgggtgtgctagggcccact
gagtttgtgcccaagatggtgcggggctggtgctaaccataaggaacccc
caactgctggttgggtgggtttcctttgttcctgttcctgctggcacaag
accctccaggaatttttggaacagatgttgtgttctgctcaccagtgatc
tcaagatcctgagtttgctagggtgcctgcagtgtggagagtcctctggg
gaccttgggattctctgccgattttgtgcccaatatggctcatgaggatt
atcatgttttaaatcccagtagtcatcttcatatatacaactcaataatt
tttcattaagaagaccggctttcaataacttgaaaagaagccctatatat
ttcagaattcaaattcaactcaaccagcagttacctgattctctcaatca
gacctttggagcagtacttatcacagagaccctgagttattttgagaata
gctacacagtataagtaaaatgaaggcaggtattttgctccaaatctgga
tcaagaagaatgtgatgtcaaacagaatggaaagaaaacctatgaacctt
cctgaagtagtcagattaaagagtgggtaggaaagtaagttggtagagaa
aatgtaattgagaatcattgagcctgagaaagaaatagcaatgtatacac
tagataccttggtcattctcagttccctgtatctgggttccattgtggaa
cttggttatataagttagctataaaattttataataaatattatatttac
tatcaaaacattgtaagatatatttcctttttttagtaaaaggtaccata
aactctccatttgtttgttcagaaacctgaaaaagacctaacttcctcca
ttatccatctacactaagttcctgaactaatagagatcagaaattattta
ttccacatctgctcatatatatatatatatatcccaaattttatcctcca
tgtttatagagcatttcacaatgaaataatttgatactacatttcccttg
ctaggattctcagtgatctcctcacttttgtagataaaatataaactgta
agaaagcatcaataaacattttatgtggcttcctccttagttaggtgaat
cttcttcccccggacgtctttttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_85869376_85870446
seq2: B6Ng01-087J21.b_50_1119 (reverse)

seq1  ATTTTATTTTTGAGATTATAATATAATTACAACCTTTGCCCC-TTTCCTT  49
      |||||||||| |||||   || |||||||| ||||||||||| |||| ||
seq2  ATTTTATTTTGGAGATATAAAAATAATTAC-ACCTTTGCCCCTTTTCTTT  49

seq1  TCCTCCCAACAAACTTTCTCACATACCTGTCTCTGGTAT-CTTTCAACTT  98
      || ||||||||||| |||||||||| ||||||||||||| ||||||||||
seq2  TCTTCCCAACAAACCTTCTCACATA-CTGTCTCTGGTATCCTTTCAACTT  98

seq1  TGTGGCCTCTCTTATCATTAATTGTTATTGAATGTATATATATATATATA  148
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCTCTC-TATCATTAATTGTTATTGAATGTATATATATATATATA  147

seq1  TATATATATATATATAATACTTACATATATAATCCTAAGTATAACCTATT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATAATACTTACATATATAATCCTAAGTATAACCTATT  197

seq1  CAGTCTGTATAATGTTATTTGTATGTATGGTTTTTGGGCTGACATTTTGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGTATAATGTTATTTGTATGTATGGTTTTTGGGCTGACATTTTGG  247

seq1  CACTGGATAACCAATTAGTGTGCTCTTCCCTGGGAAAGACGACCATGCCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGATAACCAATTAGTGTGCTCTTCCCTGGGAAAGACGACCATGCCC  297

seq1  AATGTCAGCTTTCCTCAGTTGTCTATATTTCTATGGACAATGTTAAGACC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAGCTTTCCTCAGTTGTCTATATTTCTATGGACAATGTTAAGACC  347

seq1  ACTTGGTTTTTCTCTGTCCACTTTGCTCTGCCACTGATCTTCAAAAACCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTTTTTCTCTGTCCACTTTGCTCTGCCACTGATCTTCAAAAACCC  397

seq1  CACTGTTCCTTTCTGAGTGGTGCCTAATTCTTTAAGTTCTAAAATTCTAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTCCTTTCTGAGTGGTGCCTAATTCTTTAAGTTCTAAAATTCTAT  447

seq1  GCATTTAAAATTTTAAAGTATATATCAAAGGAGGCTGCTTCTCTGTCTAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAAAATTTTAAAGTATATATCAAAGGAGGCTGCTTCTCTGTCTAG  497

seq1  ATTCTTCTTGCTCATGCATTTCACGGATAAATGTATGTGAAGAATAAAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTTGCTCATGCATTTCACGGATAAATGTATGTGAAGAATAAAAT  547

seq1  CAAACTACCAAGTCACCCTTCAAAAGAACCCTAATTTCACTGATTAACCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTACCAAGTCACCCTTCAAAAGAACCCTAATTTCACTGATTAACCA  597

seq1  TATAGCCAAATGTAATTGTGTCTGTTCAGTCTCATATCTCATAGCACTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCCAAATGTAATTGTGTCTGTTCAGTCTCATATCTCATAGCACTTT  647

seq1  CTCATTTTCCTCATTCTATCAATCTTAGGGAAAAAATTAAGGCATAGTAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTCCTCATTCTATCAATCTTAGGGAAAAAATTAAGGCATAGTAG  697

seq1  AGGACAGCGTATCATCGAGCTCATGAGAACAAACCCCATGGTCTTCACTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGCGTATCATCGAGCTCATGAGAACAAACCCCATGGTCTTCACTG  747

seq1  AATTGGCTGAATAAGTCTTTCTTGGGTATCCCTCTAGTAATGGTGCAATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGCTGAATAAGTCTTTCTTGGGTATCCCTCTAGTAATGGTGCAATG  797

seq1  TATATTTGTGCTCAAATTCTGTAGCATTAAATTAAGTGGCAGGTAGATTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGTGCTCAAATTCTGTAGCATTAAATTAAGTGGCAGGTAGATTT  847

seq1  ACACATTTAGAAAATAGCTGAGCACTCTGATGAAAAGCCCAGAGATGAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTTAGAAAATAGCTGAGCACTCTGATGAAAAGCCCAGAGATGAAA  897

seq1  TTTCACAAATATCTGTAACTAGGCAGCAGGTACCAACCAAATACAACCAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAAATATCTGTAACTAGGCAGCAGGTACCAACCAAATACAACCAG  947

seq1  TAGTTAGTCTGTTTTAGAGTAGACATTTTGAAATTGATTAAAACAAGGTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAGTCTGTTTTAGAGTAGACATTTTGAAATTGATTAAAACAAGGTG  997

seq1  ACTGGAATTCAAACTGGCTTTCACAACCAGAGTATTCCAATATATGGTAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAATTCAAACTGGCTTTCACAACCAGAGTATTCCAATATATGGTAA  1047

seq1  ATGTAATATAATAAACAGAATTC  1071
      |||||||||||||||||||||||
seq2  ATGTAATATAATAAACAGAATTC  1070

seq1: chr5_85742915_85744106
seq2: B6Ng01-087J21.g_67_1242

seq1  GAATTCCACTCACCAATGATGCCAAGATCCTGGGTGTGCTAGGGCCCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCACCAATGATGCCAAGATCCTGGGTGTGCTAGGGCCCACT  50

seq1  GAGTTTGTGCCCAAGATGGTGCGGGGCTGGTGCTAACCATAAGGAACCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGTGCCCAAGATGGTGCGGGGCTGGTGCTAACCATAAGGAACCCC  100

seq1  CAACTGCTGGTTGGGTGGGTTTCCTTTGTTCCTGTTCCTGCTGGCACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCTGGTTGGGTGGGTTTCCTTTGTTCCTGTTCCTGCTGGCACAAG  150

seq1  ACCCTCCAGGAATTTTTGGAACAGATGTTGTGTTCTGCTCACCAGTGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCAGGAATTTTTGGAACAGATGTTGTGTTCTGCTCACCAGTGATC  200

seq1  TCAAGATCCTGAGTTTGCTAGGGTGCCTGCAGTGTGGAGAGTCCTCTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATCCTGAGTTTGCTAGGGTGCCTGCAGTGTGGAGAGTCCTCTGGG  250

seq1  GACCTTGGGATTCTCTGCCGATTTTGTGCCCAATATGGCTCATGAGGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGGGATTCTCTGCCGATTTTGTGCCCAATATGGCTCATGAGGATT  300

seq1  ATCATGTTTTAAATCCCAGTAGTCATCTTCATATATACAACTCAATAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTTTTAAATCCCAGTAGTCATCTTCATATATACAACTCAATAATT  350

seq1  TTTCATTAAGAAGACCGGCTTTCAATAACTTGAAAAGAAGCCCTATATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTAAGAAGACCGGCTTTCAATAACTTGAAAAGAAGCCCTATATAT  400

seq1  TTCAGAATTCAAATTCAACTCAACCAGCAGTTACCTGATTCTCTCAATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAATTCAAATTCAACTCAACCAGCAGTTACCTGATTCTCTCAATCA  450

seq1  GACCTTTGGAGCAGTACTTATCACAGAGACCCTGAGTTATTTTGAGAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTTGGAGCAGTACTTATCACAGAGACCCTGAGTTATTTTGAGAATA  500

seq1  GCTACACAGTATAAGTAAAATGAAGGCAGGTATTTTGCTCCAAATCTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACAGTATAAGTAAAATGAAGGCAGGTATTTTGCTCCAAATCTGGA  550

seq1  TCAAGAAGAATGTGATGTCAAACAGAATGGAAAGAAAACCTATGAACCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAGAATGTGATGTCAAACAGAATGGAAAGAAAACCTATGAACCTT  600

seq1  CCTGAAGTAGTCAGATTAAAGAGTGGGTAGGAAAGTAAGTTGGTAGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGTAGTCAGATTAAAGAGTGGGTAGGAAAGTAAGTTGGTAGAGAA  650

seq1  AATGTAATTGAGAATCATTGAGCCTGAGAAAGAAATAGCAATGTATACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAATTGAGAATCATTGAGCCTGAGAAAGAAATAGCAATGTATACAC  700

seq1  TAGATACCTTGGTCATTCTCAGTTCCCTGTATCTGGGTTCCATTGTGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACCTTGGTCATTCTCAGTTCCCTGTATCTGGGTTCCATTGTGGAA  750

seq1  CTTGGTTATATAAGTTAGCTATAAAATTTTATAATAAATATTATATTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTATATAAGTTAGCTATAAAATTTTATAATAAATATTATATTTAC  800

seq1  TATCAAAACATTGTAAGATATATTTCCTTTTTTTAGTAAAAGGTACCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAACATTGTAAGATATATTTCCTTTTTTTAGTAAAAGGTACCATA  850

seq1  AACTCTCCATTTGTTTGTTCAGAAACCTGAAAAAGACCTAACTTCCTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCCATTTGTTTGTTCAGAAACCTGAAAAAGACCTAACTTCCTCCA  900

seq1  TTATCCATCTACAACTAAGTTCCTGAACTAATAGAGATCAGAAATTATTT  950
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTATCCATCTAC-ACTAAGTTCCTGAACTAATAGAGATCAGAAATTATTT  949

seq1  ATTCCACATCTGCTTCTTTATATATATATATATATCCCAAATTTTATCCT  1000
      ||||||||||||||    ||||||||||||||||||||||||||||||||
seq2  ATTCCACATCTGCT--CATATATATATATATATATCCCAAATTTTATCCT  997

seq1  CCATGTTTATTAGGAGCATTTTCACCAATGAAATAATTTGATACCTACA-  1049
      ||||||||||   ||||| ||||| |||||||||||||||||| ||||| 
seq2  CCATGTTTAT--AGAGCA-TTTCA-CAATGAAATAATTTGATA-CTACAT  1042

seq1  TTCCCTTGCTAAGGATTCTTCAGTGATCCTTCCTCACTTTTGTAAGATAA  1099
      |||||||||| ||||||| |||||||||  ||||||||||||| ||||||
seq2  TTCCCTTGCT-AGGATTC-TCAGTGATC--TCCTCACTTTTGT-AGATAA  1087

seq1  AATATAAACTGTTAAGATAGCATCCAATAAACATTTTATGTGGTCATCCT  1149
      ||||||||||| ||||| ||||| ||||||||||||||||||| | ||||
seq2  AATATAAACTG-TAAGAAAGCAT-CAATAAACATTTTATGTGG-CTTCCT  1134

seq1  CTCTGTTTAGTTAGATCTTCTCCCACAGGCACCTCTTTTTCTT  1192
      |  |  |||| |  ||||||| || | || || ||||||||||
seq2  CCTTAGTTAGGTGAATCTTCTTCCCCCGG-ACGTCTTTTTCTT  1176