BAC Information

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BAC

Clone NameB6Ng01-087N09
Chromosome16 (Build37)5 (Build37)
Map Location 63,350,519 - 63,351,61318,084,516 - 18,084,575
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
Downstream geneEpha3, LOC100043540
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087N09.bB6Ng01-087N09.g
ACCDH900850DH900851
length1,092404
definitionDH900850|Mus musculus domesticus DNA, BAC clone: B6Ng01-087N09, 5' end.DH900851|Mus musculus domesticus DNA, BAC clone: B6Ng01-087N09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(63,350,519 - 63,351,613)(18,084,516 - 18,084,575)
sequence
gaattctatgttcccctgtgacacacactgtgattccatgtccatgtgac
aaccgaaatgaggaatttcctaggtgagggagggggaaagcacttttcca
tgtatcaacccttattaatggtttcccatccatggcttgattttcacccc
ccctttcccacccatctttgatgcttgtgtctacccttgcatacccaaaa
gagcgtgcccttggacaacaaaaaaacaacttaacaactcttgggagccc
ctttcttggcatgaccccactggatttgcctccggagtccatgtagggca
actcatctgtactaggttccctgggggcgtgctctaaattctcggaggta
aagcttcacttccctcctggatctggcccactctaattttccagtcaata
ttacccatgacaatcccaattttgattcctattttgagctctagcaaaca
aacaacaacagcaaaatccctccatattaaatgctatttttctgctggac
agaaaaatacgtttccaattactacatgtgagagaatcatcttctaagaa
tgatactgtgaaacataagatcatggaacccagtcctgtgggtgaagagt
agggacgctctgattataattgtgatgtgaagccagggaacagtctgttt
cgttgtctgagctgcaatgtattatattttttccttctagaaatgatcga
tgagttctgatattcaggacagacttcttacatacatcaacaccgctgac
tccaaataattcgtcaagaatacgagtgatacttgaagttggcattgaaa
tgaatataagttcacctggaggtgaggatgcaaactccatggaggtcctt
tcttgccttcaggattgaaggctaatgtttgtgagcatggatggcacaca
gctattcattaacatataattgattctggaggggagagagcaacgacgca
ttgcattagatgtttaaatcacatgtggaaccattctctccagagccatt
taatagggaagtacacagaggaacgcccgaacaagagatgcaagcataaa
gaccgctaagactttgcgaatgccattatggacaaatagcaa
gaattctcacctgaggaataccgaatggcagagaagctcctgaaaaaatg
ttcaactcccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaagttcaggtgacatc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtactaccactctggaaatcagtctggcggttcctca
gaaaagtggacagatcactaccggaggatcccccaatacctctcctgggc
gtatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagcctgaaactggaaagaacccggat
gccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_63350519_63351613
seq2: B6Ng01-087N09.b_45_1136

seq1  GAATTCTATGTTCCCATATGACAGCAACTG---TTAAATGTTTCCCATGT  47
      ||||||||||||||| | |||||   ||||   ||  ||||   ||||||
seq2  GAATTCTATGTTCCCCTGTGACACACACTGTGATTCCATGT---CCATGT  47

seq1  GACAGCCGTTATTAAATATTTCCCATGTGACAGCCATTATTAAA--TATT  95
      |||| |||  || |   |||||| | |||  ||  |     |||    ||
seq2  GACAACCGAAATGAGGAATTTCCTAGGTG--AGGGAGGGGGAAAGCACTT  95

seq1  TCCCATGTAACAGCCATTATTAAATGTTTACCAGAGCATTTC-TGATTTT  144
      | ||||||| || || |||||||  |||| |||   |||  | |||||||
seq2  TTCCATGTATCAACCCTTATTAATGGTTTCCCA-TCCATGGCTTGATTTT  144

seq1  CAGCCCCCC-TTCTCTTTGATCTTTGTTAGATGT-TCAGCAATGTTGATA  192
      || |||||| ||| |    ||||||| |   ||| ||  |  | |  |||
seq2  CACCCCCCCTTTCCCACCCATCTTTGATGCTTGTGTCTACCCT-TGCATA  193

seq1  CCCAGAACTGCATCCCAGTAAGAGTCAAGAAAAGAACTTGAAGACTCTTG  242
      |||| ||  || | ||  |      ||| |||| ||||| |  |||||||
seq2  CCCAAAAGAGCGTGCCCTTGGACAACAAAAAAACAACTTAACAACTCTTG  243

seq1  GGAGCCAGTTTCTTGTCATTTCCCCATTAGATTTACCTCCAG---CCAAA  289
      ||||||  ||||||| |||  ||||| | ||||| ||||| |   |||  
seq2  GGAGCCCCTTTCTTGGCATGACCCCACTGGATTTGCCTCCGGAGTCCATG  293

seq1  TCAGAGGGCAACTCATCTTTACTAGGTTCACTGAAACGGTGCTATAAATA  339
      |   |||||||||||||| |||||||||| |||     ||||| ||||| 
seq2  T---AGGGCAACTCATCTGTACTAGGTTCCCTGGGGGCGTGCTCTAAATT  340

seq1  CTCAGAAATAATGCTTCACTAGCAAGCTGGATATGCCTTAGTCTAATTTT  389
      ||| ||  ||| ||||||||  |   |||||| || |  | |||||||||
seq2  CTCGGAGGTAAAGCTTCACTTCCCTCCTGGATCTGGCCCACTCTAATTTT  390

seq1  CCAGTAAATATTTACCATGACAATCCCTATTTTGATTCCTATTTTGAGCT  439
      ||||| ||||||  ||||||||||||| ||||||||||||||||||||||
seq2  CCAGTCAATATTACCCATGACAATCCCAATTTTGATTCCTATTTTGAGCT  440

seq1  CTAGCAAACAAACAACAACAGCAAAATCCCTCCATATTAAATGCTATTTT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAAACAAACAACAACAGCAAAATCCCTCCATATTAAATGCTATTTT  490

seq1  AAATAAGAAACAGAAAAATACTTTTCAAATTACTACATGTGAGAGAATCA  539
         |     |||||||||||| |||| |||||||||||||||||||||||
seq2  -TCTGCTGGACAGAAAAATACGTTTCCAATTACTACATGTGAGAGAATCA  539

seq1  TCTTCTAAGAATGATACTGTAAAACAGAAGATCATGTTACCCAGTCCT-T  588
      |||||||||||||||||||| ||||| |||||||||  |||||||||| |
seq2  TCTTCTAAGAATGATACTGTGAAACATAAGATCATGGAACCCAGTCCTGT  589

seq1  GGGTGAAGAGTAGGGACGCTCTGATTAGAATTGTGATGTGAAGCCA-GGA  637
      ||||||||||||||||||||||||||| |||||||||||||||||| |||
seq2  GGGTGAAGAGTAGGGACGCTCTGATTATAATTGTGATGTGAAGCCAGGGA  639

seq1  ACAGTCTAGTGCGTTGTCTGAAATGCAATGTATTATA-GTTTTCCTTCTA  686
      |||||||  | ||||||||||  ||||||||||||||  |||||||||||
seq2  ACAGTCTGTTTCGTTGTCTGAGCTGCAATGTATTATATTTTTTCCTTCTA  689

seq1  GAAAGTACCGATGAGTTCTGAAATTCAGGACAGACTTCTTACATACTAGA  736
      ||||  | ||||||||||||| ||||||||||||||||||||||||   |
seq2  GAAATGATCGATGAGTTCTGATATTCAGGACAGACTTCTTACATACATCA  739

seq1  AAACGGCAGACTCCAAATAATTCGTCAAGAATACAAGTGATACTTGAAGT  786
      | || || |||||||||||||||||||||||||| |||||||||||||||
seq2  ACACCGCTGACTCCAAATAATTCGTCAAGAATACGAGTGATACTTGAAGT  789

seq1  TGGCATTGAAATGAATATAAGTTCACCTGGAGGTGAGGATGCAAACTCCA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTGAAATGAATATAAGTTCACCTGGAGGTGAGGATGCAAACTCCA  839

seq1  TGGAGGTCCTTTCTTGCCTTCAGGATTGAAGGCTAATGTTTGTGAGCATG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTCCTTTCTTGCCTTCAGGATTGAAGGCTAATGTTTGTGAGCATG  889

seq1  GATGGCACACAGCTATTCATTAACATATAATTGATTCTGGAGGGGAGAGA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCACACAGCTATTCATTAACATATAATTGATTCTGGAGGGGAGAGA  939

seq1  GCAACGACGCATTGCATTAGATGTTTTAAATCACATGTGGAACCATTCTC  986
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCAACGACGCATTGCATTAGATG-TTTAAATCACATGTGGAACCATTCTC  988

seq1  TCCAAGAGCCATTTAATAGGGAAGGTACACAGGAGGAACGCCCGAACAAG  1036
      ||| ||||||||||||||||||| ||||||| ||||||||||||||||||
seq2  TCC-AGAGCCATTTAATAGGGAA-GTACACA-GAGGAACGCCCGAACAAG  1035

seq1  AAGAATGCAAGCATAAAGACAGCTAAGACTTTGCGAATGCTATTATGGAC  1086
      |   |||||||||||||||| ||||||||||||||||||| |||||||||
seq2  A--GATGCAAGCATAAAGACCGCTAAGACTTTGCGAATGCCATTATGGAC  1083

seq1  AAATAGCAA  1095
      |||||||||
seq2  AAATAGCAA  1092

seq1: chr5_18084516_18084575
seq2: B6Ng01-087N09.g_387_446 (reverse)

seq1  GGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCT  50

seq1  TACCAGTTGG  60
      ||||||||||
seq2  TACCAGTTGG  60