BAC Information

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BAC

Clone NameB6Ng01-088A02
Chromosome5 (Build37)
Map Location 83,835,003 - 83,991,111
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039434, Srd5a2l2
Downstream geneLOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088A02.bB6Ng01-088A02.g
ACCDH900978DH900979
length728909
definitionDH900978|Mus musculus domesticus DNA, BAC clone: B6Ng01-088A02, 5' end.DH900979|Mus musculus domesticus DNA, BAC clone: B6Ng01-088A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,990,507 - 83,991,111)(83,835,003 - 83,835,911)
sequence
gaattcacttaatactcagaccagactcagaaaatggtatattacatatt
attgtctgttctccaaatgaagttaatgaggttatttatttatttattta
tttacttacttaatttactttacatccagaacactgcccacctcctggtc
acatcctcctgcaatccttctcctctccccctcctcttctcctaggagca
ggtaggggccccctggatatacacagaccctggcacaccccaagttttct
tgactagctcatggtaggagtgagatttaaatatctagcatgtgattttc
cttttttgtgtatcaacaataaaaactgcttatgtgtggaactttctttc
catttccccttctcagtgtagaagtttgtatgtgatttgaacctgtacag
gtcttatgcatgctgtcaaatcctctacggtttcatatgtctatcagtac
tgttgtgtcaaaaagatgctgtttcttggtgtcatcactcatgtctggct
tctataatctttctgtatcctcttctgcactgaggcatgaggagagccat
ctgattaagatatccagctgaagcctgaatagttcaaagtctctccaact
ctgcaatttgtccagttgtgtatgtatatgacaaccacacttcagtacag
ctctacctataggagtagttggacaacacaagtggctatatggatttgtg
gtagtgtgtgtgtgtgtgtgtgtgtgtg
gaattccttttgttaattcttagctgtttttgtttgtttgtttgtttggg
gttttttgtttgtttgtttttgtttttcgagacagggtttctttgtgtat
ccctggctgtcctggaactcactatgtagaccaggctggacttgaactca
gaaatccgcctgcctctgccacccaagtgctgggattaaagcatgcacca
ccactgcccggctagctgtttcttttacaatactgatattttaagcaaat
caaatgaatatgctatttgatagtttcatggttttaataataaagtttta
tgttttcatattcataaaaataaatatatctatgagaatttaagtgtata
aaagtaacttaaaccagtaaaagttgtttactataacttaatttctttca
acaatgatcttcagttttctgaacagaacaccaatggtttaagatcaact
attgacaaatggcatgtcataaaattgaaaagcttctgtaggcaaaggac
actgtcaatagtacaaaacagcaaactacagattggggaaagatccttac
caaccctacatctgatagagagctaatatcaaaaatatacaaagaactca
agaagttggactccagagaaccaaataactctattaaaaatggggtacag
agctaaacaaagaattctcaactgaggaatctcaaatggctgagaagcat
gtaaagaaatgttcaacatcccaccttgggcctgtcactggaccttcttt
tcctcaagctcctctccatttccatccctgaagttctttcagacaggaac
aattgttggtgaaagttttgactgtgggatggcaactcacaagatgcttt
ctgctggaagtggctctataagttcactcttcccactgtagggcatttca
tctttgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_83990507_83991111
seq2: B6Ng01-088A02.b_161_765 (reverse)

seq1  CACACACACACACACACACACACACTACCACAAATCCATATAGCCACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACTACCACAAATCCATATAGCCACTTG  50

seq1  TGTTGTCCAACTACTCCTATAGGTAGAGCTGTACTGAAGTGTGGTTGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCCAACTACTCCTATAGGTAGAGCTGTACTGAAGTGTGGTTGTCA  100

seq1  TATACATACACAACTGGACAAATTGCAGAGTTGGAGAGACTTTGAACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATACACAACTGGACAAATTGCAGAGTTGGAGAGACTTTGAACTAT  150

seq1  TCAGGCTTCAGCTGGATATCTTAATCAGATGGCTCTCCTCATGCCTCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTTCAGCTGGATATCTTAATCAGATGGCTCTCCTCATGCCTCAGT  200

seq1  GCAGAAGAGGATACAGAAAGATTATAGAAGCCAGACATGAGTGATGACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGAGGATACAGAAAGATTATAGAAGCCAGACATGAGTGATGACAC  250

seq1  CAAGAAACAGCATCTTTTTGACACAACAGTACTGATAGACATATGAAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAACAGCATCTTTTTGACACAACAGTACTGATAGACATATGAAACC  300

seq1  GTAGAGGATTTGACAGCATGCATAAGACCTGTACAGGTTCAAATCACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGATTTGACAGCATGCATAAGACCTGTACAGGTTCAAATCACATA  350

seq1  CAAACTTCTACACTGAGAAGGGGAAATGGAAAGAAAGTTCCACACATAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTCTACACTGAGAAGGGGAAATGGAAAGAAAGTTCCACACATAAG  400

seq1  CAGTTTTTATTGTTGATACACAAAAAAGGAAAATCACATGCTAGATATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTTATTGTTGATACACAAAAAAGGAAAATCACATGCTAGATATTT  450

seq1  AAATCTCACTCCTACCATGAGCTAGTCAAGAAAACTTGGGGTGTGCCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCACTCCTACCATGAGCTAGTCAAGAAAACTTGGGGTGTGCCAGG  500

seq1  GTCTGTGTATATCCAGGGGGCCCCTACCTGCTCCTAGGAGAAGAGGAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGTATATCCAGGGGGCCCCTACCTGCTCCTAGGAGAAGAGGAGGG  550

seq1  GGAGAGGAGAAGGATTGCAGGAGGATGTGACCAGGAGGTGGGCAGTGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAGAAGGATTGCAGGAGGATGTGACCAGGAGGTGGGCAGTGTTC  600

seq1  TGGAT  605
      |||||
seq2  TGGAT  605

seq1: chr5_83835003_83835911
seq2: B6Ng01-088A02.g_68_975

seq1  GAATTCCTTTTGTTAATTCTTAGCTGTTTTTGTTTGTTTGTTTGTTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTGTTAATTCTTAGCTGTTTTTGTTTGTTTGTTTGTTTGGG  50

seq1  GTTTTTTGTTTGTTTGTTTTTGTTTTTCGAGACAGGGTTTCTTTGTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGTTTGTTTGTTTTTGTTTTTCGAGACAGGGTTTCTTTGTGTAT  100

seq1  CCCTGGCTGTCCTGGAACTCACTATGTAGACCAGGCTGGACTTGAACTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTGTCCTGGAACTCACTATGTAGACCAGGCTGGACTTGAACTCA  150

seq1  GAAATCCGCCTGCCTCTGCCACCCAAGTGCTGGGATTAAAGCATGCACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCGCCTGCCTCTGCCACCCAAGTGCTGGGATTAAAGCATGCACCA  200

seq1  CCACTGCCCGGCTAGCTGTTTCTTTTACAATACTGATATTTTAAGCAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCCCGGCTAGCTGTTTCTTTTACAATACTGATATTTTAAGCAAAT  250

seq1  CAAATGAATATGCTATTTGATAGTTTCATGGTTTTAATAATAAAGTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAATATGCTATTTGATAGTTTCATGGTTTTAATAATAAAGTTTTA  300

seq1  TGTTTTCATATTCATAAAAATAAATATATCTATGAGAATTTAAGTGTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCATATTCATAAAAATAAATATATCTATGAGAATTTAAGTGTATA  350

seq1  AAAGTAACTTAAACCAGTAAAAGTTGTTTACTATAACTTAATTTCTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAACTTAAACCAGTAAAAGTTGTTTACTATAACTTAATTTCTTTCA  400

seq1  ACAATGATCTTCAGTTTTCTGAACAGAACACCAATGGTTTAAGATCAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGATCTTCAGTTTTCTGAACAGAACACCAATGGTTTAAGATCAACT  450

seq1  ATTGACAAATGGCATGTCATAAAATTGAAAAGCTTCTGTAGGCAAAGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAAATGGCATGTCATAAAATTGAAAAGCTTCTGTAGGCAAAGGAC  500

seq1  ACTGTCAATAGTACAAAACAGCAAACTACAGATTGGGGAAAGATCCTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAATAGTACAAAACAGCAAACTACAGATTGGGGAAAGATCCTTAC  550

seq1  CAACCCTACATCTGATAGAGAGCTAATATCAAAAATATACAAAGAACTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCTACATCTGATAGAGAGCTAATATCAAAAATATACAAAGAACTCA  600

seq1  AGAAGTTGGACTCCAGAGAACCAAATAACTCTATTAAAAATGGGGTACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTGGACTCCAGAGAACCAAATAACTCTATTAAAAATGGGGTACAG  650

seq1  AGCTAAACAAAGAATTCTCAACTGAGGAATCTCAAATGGCTGAGAAGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAACAAAGAATTCTCAACTGAGGAATCTCAAATGGCTGAGAAGCAT  700

seq1  GTAAAGAAATGTTCAACATCCCACCTTGGGCCTGTCACTGGACCTTCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAAATGTTCAACATCCCACCTTGGGCCTGTCACTGGACCTTCTTT  750

seq1  TCCTCAAGCTCCTCTCCATTTCCATCCCTGAAGTTCTTTCAGACAGGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAGCTCCTCTCCATTTCCATCCCTGAAGTTCTTTCAGACAGGAAC  800

seq1  AATTGTTGGTGAAAGTTTTGACTGTGGGATGGCAACTCACAAGATGCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTGGTGAAAGTTTTGACTGTGGGATGGCAACTCACAAGATGCTTT  850

seq1  CTGCTGGAAGTGGGCTCTATAAGTTCACTCTTCCCACTGTAGGGCATTTC  900
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGAAGT-GGCTCTATAAGTTCACTCTTCCCACTGTAGGGCATTTC  899

seq1  ATCTTTGAG  909
      |||||||||
seq2  ATCTTTGAG  908