BAC Information

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BAC

Clone NameB6Ng01-089E08
Chromosome5 (Build37)
Map Location 37,680,837 - 37,842,118
singlet/doubletdoublet
Overlap geneCrmp1, Evc, Evc2, LOC100040355, LOC100040988, Stk32b
Upstream geneSorcs2, Grpel1, Ccdc96, Tbc1d14, D5Ertd579e, LOC100040278, LOC100040825, Cno, Mrfap1, Man2b2, Ppp2r2c, Wfs1, Jakmip1, EG330070, Gm1043, LOC100040936
Downstream geneCytl1, Msx1, Stx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089E08.bB6Ng01-089E08.g
ACCDH901891DH901892
length880373
definitionDH901891|Mus musculus domesticus DNA, BAC clone: B6Ng01-089E08, 5' end.DH901892|Mus musculus domesticus DNA, BAC clone: B6Ng01-089E08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,680,837 - 37,681,716)(37,841,717 - 37,842,118)
sequence
gaattccacagtttagagttcaggttgttggattcaatggcttttaaaaa
caggaacctgtggggggaaaaataaaaataaaaacaggagccacttaaaa
tgtgaacctgggctcttgagctgtataaaaacaggcagtgggctaaagta
ggtcagtgggtcataccagaaagagtatgtgctagcaacagagagggtgg
aaggatagaaagagggtgtagttttagcttaaattgtaggatgagaagta
ctctgcacagggaatacagtggatcctgggtcaggggaccctgggacaca
actcacttttcactatcctttcttgaaatagctacccgagtacaattctg
atattaaaggtagccaatgttattgcacaaaaagattccaagcacagctc
ttgaatcttgtctggtatgcgcagaaggctgccttctgtgctgggaggag
ctggcagactggctctctaagtccatcagacaactgaatactgtagatct
atccttagatgtggatataataatctttagatcaaagatagccctgtaat
aacaagcctgtgttagggcttttggcccgctctctgcctgggccctctat
cccctctgaagctcacagtgctgccctcagggcttcgtggacatttacca
aatgtcaatcctgctgccagccgcatagctgattcccctgcattgctata
aagttcaccctcgtccacttccaaggcagggcactgctctggcacatagg
tgcagtgtgttaggctagcaggtatcttcacggtaatagttacctgaaga
tggaatgaaggcgcatgatggaaaatgaatgaagtgtaggctgagtcctg
attggccaggaagacagacagacagacaga
acacatggatgaattgtagggtgagtgctcatctcagtagatggaacaga
taatgaataggtggagagacagactagaggggttaatatgttgttaggcg
tggatggcaggtgagtgagtgggtgaaggatatgcatgaatggagaatat
agaggtgggagtgtgcatgaggtaggatgacagacagatatgagagtgga
cagacagatggtacagtatttgaatgtgacccttagataagttataaata
tatctataaatagtcaagttcaaattggatcggtagggaatgtttctgta
gatttatggtatatatttatatttggtatatatctgtggatggatggaca
gatggtttggatggatagatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_37680837_37681716
seq2: B6Ng01-089E08.b_48_927

seq1  GAATTCCACAGTTTAGAGTTCAGGTTGTTGGATTCAATGGCTTTTAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGTTTAGAGTTCAGGTTGTTGGATTCAATGGCTTTTAAAAA  50

seq1  CAGGAACCTGTGGGGGGAAAAATAAAAATAAAAACAGGAGCCACTTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACCTGTGGGGGGAAAAATAAAAATAAAAACAGGAGCCACTTAAAA  100

seq1  TGTGAACCTGGGCTCTTGAGCTGTATAAAAACAGGCAGTGGGCTAAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACCTGGGCTCTTGAGCTGTATAAAAACAGGCAGTGGGCTAAAGTA  150

seq1  GGTCAGTGGGTCATACCAGAAAGAGTATGTGCTAGCAACAGAGAGGGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGTGGGTCATACCAGAAAGAGTATGTGCTAGCAACAGAGAGGGTGG  200

seq1  AAGGATAGAAAGAGGGTGTAGTTTTAGCTTAAATTGTAGGATGAGAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATAGAAAGAGGGTGTAGTTTTAGCTTAAATTGTAGGATGAGAAGTA  250

seq1  CTCTGCACAGGGAATACAGTGGATCCTGGGTCAGGGGACCCTGGGACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCACAGGGAATACAGTGGATCCTGGGTCAGGGGACCCTGGGACACA  300

seq1  ACTCACTTTTCACTATCCTTTCTTGAAATAGCTACCCGAGTACAATTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTTTTCACTATCCTTTCTTGAAATAGCTACCCGAGTACAATTCTG  350

seq1  ATATTAAAGGTAGCCAATGTTATTGCACAAAAAGATTCCAAGCACAGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAAGGTAGCCAATGTTATTGCACAAAAAGATTCCAAGCACAGCTC  400

seq1  TTGAATCTTGTCTGGTATGCGCAGAAGGCTGCCTTCTGTGCTGGGAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCTTGTCTGGTATGCGCAGAAGGCTGCCTTCTGTGCTGGGAGGAG  450

seq1  CTGGCAGACTGGCTCTCTAAGTCCATCAGACAACTGAATACTGTAGATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGACTGGCTCTCTAAGTCCATCAGACAACTGAATACTGTAGATCT  500

seq1  ATCCTTAGATGTGGATATAATAATCTTTAGATCAAAGATAGCCCTGTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTAGATGTGGATATAATAATCTTTAGATCAAAGATAGCCCTGTAAT  550

seq1  AACAAGCCTGTGTTAGGGCTTTTGGCCCGCTCTCTGCCTGGGCCCTCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCCTGTGTTAGGGCTTTTGGCCCGCTCTCTGCCTGGGCCCTCTAT  600

seq1  CCCCTCTGAAGCTCACAGTGCTGCCCTCAGGGCTTCGTGGACATTTACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTGAAGCTCACAGTGCTGCCCTCAGGGCTTCGTGGACATTTACCA  650

seq1  AATGTCAATCCTGCTGCCAGCCGCATAGCTGATTCCCCTGCATTGCTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAATCCTGCTGCCAGCCGCATAGCTGATTCCCCTGCATTGCTATA  700

seq1  AAGTTCACCCTCGTCCACTTCCAAGGCAGGGCACTGCTCTGGCACATAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCACCCTCGTCCACTTCCAAGGCAGGGCACTGCTCTGGCACATAGG  750

seq1  TGCAGTGTGTTAGGCTAGCAGGCATCTTCACGGTAATAGTTACCTGAAGA  800
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGCAGTGTGTTAGGCTAGCAGGTATCTTCACGGTAATAGTTACCTGAAGA  800

seq1  TGGAATGAAGGCGCATGATGGAAAATGAATGAAGTGTAGGCTGAGTCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGAAGGCGCATGATGGAAAATGAATGAAGTGTAGGCTGAGTCCTG  850

seq1  AGTGGCCAGGAAGACAGACAGACAGACAGA  880
      | ||||||||||||||||||||||||||||
seq2  ATTGGCCAGGAAGACAGACAGACAGACAGA  880

seq1: chr5_37841717_37842118
seq2: B6Ng01-089E08.g_71_449 (reverse)

seq1  TCCATCTATCCATCCATCCATCTATCCATCTATCCATCC-ATCCATCTGT  49
                              ||||||||||||||| | ||||||||
seq2  ------------------------TCCATCTATCCATCCAAACCATCTGT  26

seq1  CCATCCATCCACAGATATATACCAAATATAAATATATACCATAAATCTAC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCATCCACAGATATATACCAAATATAAATATATACCATAAATCTAC  76

seq1  AGAAACATTCCCTACCGATCCAATTTGAACTTGACTATTTATAGATATAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATTCCCTACCGATCCAATTTGAACTTGACTATTTATAGATATAT  126

seq1  TTATAACTTATCTAAGGGTCACATTCAAATACTGTACCATCTGTCTGTCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACTTATCTAAGGGTCACATTCAAATACTGTACCATCTGTCTGTCC  176

seq1  ACTCTCATATCTGTCTGTCATCCTACCTCATGCACACTCCCACCTCTATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCATATCTGTCTGTCATCCTACCTCATGCACACTCCCACCTCTATA  226

seq1  TTCTCCATTCATGCATATCCTTCACCCACTCACTCACCTGCCATCCACGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCATTCATGCATATCCTTCACCCACTCACTCACCTGCCATCCACGC  276

seq1  CTAACAACATATTAACCCCTCTAGTCTGTCTCTCCACCTATTCATTATCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAACATATTAACCCCTCTAGTCTGTCTCTCCACCTATTCATTATCT  326

seq1  GTTCCATCTACTGAGATGAGCACTCACCCTACAATTCATCCATGTGTGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATCTACTGAGATGAGCACTCACCCTACAATTCATCCATGTGTGAA  376

seq1  TTC  402
      |||
seq2  TTC  379