BAC Information

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BAC

Clone NameB6Ng01-092J08
Chromosome5 (Build37)
Map Location 89,296,220 - 89,425,896
singlet/doubletdoublet
Overlap geneSlc4a4
Upstream geneOdam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1
Downstream geneGc, LOC622870, Npffr2, LOC631105, Adamts3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092J08.bB6Ng01-092J08.g
ACCDH904306DH904307
length1,209167
definitionDH904306|Mus musculus domesticus DNA, BAC clone: B6Ng01-092J08, 5' end.DH904307|Mus musculus domesticus DNA, BAC clone: B6Ng01-092J08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,424,669 - 89,425,896)(89,296,220 - 89,296,386)
sequence
gaattcaaccttgaaggggactcacatggcagaaggacagaaccaactcc
tacaagctgtcatctgaccttcatatgtgtgtcttatgtgcacctacaca
cacacacacacacacacacacacactatagcatttttcaatttttttttt
aaatatttcttttgtaagactgaaaaactcattatttccaaacccccacc
acggtcccaattccatactctttcctatgtcccccacacattgctatcgc
cgacagcgtcatctgccttaaagctgaaataaagtaacatcttgatgagc
agtattatccaccatcaatacaacacaagcaccgaggaccgaatatagaa
ggcaaaatcaggactgtgtcagacttcgggctcagtgctgctcacttgct
cagcacctgtcttccggtgcctgatttcctatgtcctagacaacagggag
gctggtcaaagccagctggctgaggtcatacatccttctgccacattttg
ccctatggatagcaaaaaaaagaaaaaaagaaaaaaaaagaaagaaaaaa
aaatcctttaaaatcagctaactcagcggctcattcaaaaaaaaaaaaaa
tgatgttcacttgatgaatagctagaagcatgagatgtcttacttcaaaa
acatgttgtgaaaatatgcataataaaataggcaaccatctccctcgtgt
tgaatatcagaggacattttaaaaggtaaaggaatttccaaggtaaagaa
gaagcaaacacaaagttaagccaaaagctgagatgaaaccagccactgac
ctgtgatgctggctggatgaaaactggctatcaactcataagcaagtata
ctctacacaaagcaggaagggggggatcactggctgtggcgcctgggcta
tttcctatggacacttgtcggctgaagacagatgttagcatccaacagag
aacagacactttcgaaggtaccaaactcttttaggaagtactcattctct
tctctcccactattccactttagccaaaagtacatgattttgtgtaatcc
gcatctgaccctatttgtggcatttagaatgcaagattgttaatactacg
ttgctaaatgcacttttatgcattacttacaatcataaaacactacgaag
aacaaatccctccttcaactcacctcaaacaagtacataaatgattcatg
atttcgttt
ttaggacggcaattcattatgagcagatatttattgaccactaactctgg
aggccaggaagtccaagaccaacatgctgttggcgtctggtgaggacttt
cttgtggtaccactacacagaagaaggcaaaaggggaggaggaatggaga
gagggagagggtgagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_89424669_89425896
seq2: B6Ng01-092J08.b_43_1251 (reverse)

seq1  AAACAGAAATCATGAAAATCATCTATGTACATTTTGGTTTGAGGTTGAGT  50
      |||| |||||||||  |||||| |||||||    | |||||||| |||||
seq2  AAAC-GAAATCATG--AATCATTTATGTAC----TTGTTTGAGG-TGAGT  42

seq1  TTGGAAGGAGTGAATTTGGTTCTTCGTAGTGTTTTATGATTTGTAGTAAT  100
      |  ||||||| ||  || |||||||||||||||||||||||   ||||||
seq2  T--GAAGGAGGGA--TTTGTTCTTCGTAGTGTTTTATGATTGTAAGTAAT  88

seq1  GCATAAAAAGTTGCATTTAGCAACGTAGTAATAACAATCTTGCATTTCTA  150
      ||||||||   ||||||||||||||||||| ||||||||||||| |||||
seq2  GCATAAAA--GTGCATTTAGCAACGTAGTATTAACAATCTTGCA-TTCTA  135

seq1  AATG-CACAAATAGGGTCAGATGCGGATTACACAAAATCATGTAACTTTT  199
      |||| |||||||||||||||||||||||||||||||||||||||   |||
seq2  AATGCCACAAATAGGGTCAGATGCGGATTACACAAAATCATGTA--CTTT  183

seq1  TGGCTAAAGGTGGGAATAGTGTGAGAGAAGAGAATGAGTACTTCCTAAGA  249
      |||||||||   ||||||||| |||||||||||||||||||||||||| |
seq2  TGGCTAAAG--TGGAATAGTGGGAGAGAAGAGAATGAGTACTTCCTAAAA  231

seq1  GAGTTTGGTACCTTCGAAAGTGTCTGTTCTCTGTTGGATGCTAACATCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGGTACCTTCGAAAGTGTCTGTTCTCTGTTGGATGCTAACATCTG  281

seq1  TCTTCAGCCGACAAGTGTCCATAGGAAATAGCCCAGGCGCCACAGCCAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGCCGACAAGTGTCCATAGGAAATAGCCCAGGCGCCACAGCCAGT  331

seq1  GATCCCCCCCTTCCCTGCTTTGTGTAGAGTATACTTGCTTATGAGTTGAT  399
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GATCCCCCCCTT-CCTGCTTTGTGTAGAGTATACTTGCTTATGAGTTGAT  380

seq1  AGCCAGTTTTCATCCAGCCAGCATCACAGGTCAGTGGCTGGTTTCATCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTTTTCATCCAGCCAGCATCACAGGTCAGTGGCTGGTTTCATCTC  430

seq1  AGCTTTTGGCTTAACTTTGTGTTTGCTTCTTCTTTACCTTGGAAATTCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTGGCTTAACTTTGTGTTTGCTTCTTCTTTACCTTGGAAATTCCT  480

seq1  TTACCTTTTAAAATGTCCTCTGATATTCAACACGAGGGAGATGGTTGCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTTTAAAATGTCCTCTGATATTCAACACGAGGGAGATGGTTGCCT  530

seq1  ATTTTATTATGCATATTTTCACAACATGTTTTTGAAGTAAGACATCTCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTATGCATATTTTCACAACATGTTTTTGAAGTAAGACATCTCAT  580

seq1  GCTTCTAGCTATTCATCAAGTGAACATCATTTTTTTTTTTTTTGAATGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAGCTATTCATCAAGTGAACATCATTTTTTTTTTTTTTGAATGAG  630

seq1  CCGCTGAGTTAGCTGATTTTAAAGGATTTTTTTTTCTTTCTTTTTTTTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTGAGTTAGCTGATTTTAAAGGATTTTTTTTTCTTTCTTTTTTTTTC  680

seq1  TTTTTTTCTTTTTTTTGCTATCCATAGGGCAAAATGTGGCAGAAGGATGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTTTTTTTGCTATCCATAGGGCAAAATGTGGCAGAAGGATGT  730

seq1  ATGACCTCAGCCAGCTGGCTTTGACCAGCCTCCCTGTTGTCTAGGACATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTCAGCCAGCTGGCTTTGACCAGCCTCCCTGTTGTCTAGGACATA  780

seq1  GGAAATCAGGCACCGGAAGACAGGTGCTGAGCAAGTGAGCAGCACTGAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCAGGCACCGGAAGACAGGTGCTGAGCAAGTGAGCAGCACTGAGC  830

seq1  CCGAAGTCTGACACAGTCCTGATTTTGCCTTCTATATTCGGTCCTCGGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAGTCTGACACAGTCCTGATTTTGCCTTCTATATTCGGTCCTCGGTG  880

seq1  CTTGTGTTGTATTGATGGTGGATAATACTGCTCATCAAGATGTTACTTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTTGTATTGATGGTGGATAATACTGCTCATCAAGATGTTACTTTA  930

seq1  TTTCAGCTTTAAGGCAGATGACGCTGTCGGCGATAGCAATGTGTGGGGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCTTTAAGGCAGATGACGCTGTCGGCGATAGCAATGTGTGGGGGA  980

seq1  CATAGGAAAGAGTATGGAATTGGGACCGTGGTGGGGGTTTGGAAATAATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGAAAGAGTATGGAATTGGGACCGTGGTGGGGGTTTGGAAATAATG  1030

seq1  AGTTTTTCAGTCTTACAAAAGAAATATTTAAAAAAAAAATTGAAAAATGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTCAGTCTTACAAAAGAAATATTTAAAAAAAAAATTGAAAAATGC  1080

seq1  TATAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTGCACATAAGACA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTGCACATAAGACA  1130

seq1  CACATATGAAGGTCAGATGACAGCTTGTAGGAGTTGGTTCTGTCCTTCTG  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATGAAGGTCAGATGACAGCTTGTAGGAGTTGGTTCTGTCCTTCTG  1180

seq1  CCATGTGAGTCCCCTTCAAGGTTGAATTC  1228
      |||||||||||||||||||||||||||||
seq2  CCATGTGAGTCCCCTTCAAGGTTGAATTC  1209

seq1: chr5_89296220_89296386
seq2: B6Ng01-092J08.g_74_240

seq1  TTAGGACGGCAATTCATTATGAGCAGATATTTATTGACCACTAACTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACGGCAATTCATTATGAGCAGATATTTATTGACCACTAACTCTGG  50

seq1  AGGCCAGGAAGTCCAAGACCAACATGCTGTTGGCGTCTGGTGAGGACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGGAAGTCCAAGACCAACATGCTGTTGGCGTCTGGTGAGGACTTT  100

seq1  CTTGTGGTACCACTACACAGAAGAAGGCAAAAGGGGAGGAGGAATGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGTACCACTACACAGAAGAAGGCAAAAGGGGAGGAGGAATGGAGA  150

seq1  GAGGGAGAGGGTGAGGA  167
      |||||||||||||||||
seq2  GAGGGAGAGGGTGAGGA  167