BAC Information

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BAC

Clone NameB6Ng01-093F20
Chromosome5 (Build37)
Map Location 81,419,746 - 81,557,078
singlet/doubletdoublet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093F20.bB6Ng01-093F20.g
ACCDH904875DH904876
length1,1291,119
definitionDH904875|Mus musculus domesticus DNA, BAC clone: B6Ng01-093F20, 5' end.DH904876|Mus musculus domesticus DNA, BAC clone: B6Ng01-093F20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,419,746 - 81,420,767)(81,555,942 - 81,557,078)
sequence
gaattcttttcagaaaggggtggcctaagtacatatatattcaattattg
tccctatactttcctttaacatttctgatgttgcattaaagtctttgata
tattttgcattgacattttcacaagatagaaatgattgcctattttcatt
cttcagcaagtagataacaggaattagggcagtatgtgttggagaaactg
tcttttctctaatatattttttgcacctttaaaatacagatgataataac
aatttggattaatttcttgctactctgtcttattctattggtttatgtcc
ctgcttttgtgacaccaccctgttatttttgtcactatggctctttagta
taatttgaaatcaagaataatgatatcgcctacaatgctctatgatacca
gctcagcagttcttttaatatttgcaatcttttgtgctttatatgaactt
caggatttttattatgatgctgaatataattgtaacttaatggagattga
attaatctcatggagtgcatttgataatacagtggtttttaaaatagtaa
ttccactggttcactgaaatttagatccctctgtcttctgttcttttcat
ttttttttctttaaaaagttcctggtattttttattaatttctgcaactt
attacttttgtgaaaatgtttggtggacagttgaggatctcttatgtata
gaatcacaacaaaatttgtctccttcttttcttatttgattactttccct
tacttgtttttctttagggctctggctaagaattcaagcagtatactgaa
taagcagcaaagagtgtcaactctctgatggtagaaggaacgttctattc
ccttattcagtataatgttggctacagatttatcacatatgcccttggtt
attttgaggtacaaacttttaattgccaatttcttcagcacttttatgtt
agagaatcttgcacactgtcaaaggactctgtacatctatcaatatgacc
atgtgatttctgtcctgagtctcttatgcactggtgtccatctatgattt
gcatatggtgatcatctggatcctttatgagagttctgctatggaatgac
ttatttaaatgactgaatgaatttggctt
gaattcaaggaaattcttgtcaaaacggctgacttggtttttgttcccca
ccaggacagtcaatgggggcaaacaccaaagaaagataactgctagccct
tttgtgggaaataggaaatgttgacaccagtgaggatggctgtaagtgta
tttacaatattgacacgagattggcagctgctcacattctgcctgaaagg
tttactactggcagggactcccagcagctgcttgctgggaacgtgagaaa
acatttggacagttagggtagcctgatttcccccctgaaaatctgtttgg
caaaacttcctggcagttaataagattatgtgaaaaaaaaaaagatcttt
taatgtgttcacatctcttcataaaacttatattgccaatatagataata
ttttcaaaatctatgatttacagaaatttgattgctgaataatgtttctt
tattagattgtacaaatggggactggattacaaggtaatattagtatttt
taatgaaagttctcttcacagagtaactttccttttaaagaaatgacaaa
ttcctgggctggggtacatttttaacagaaaactgagatgagaacagaga
ccatgatcccacactttgtgataaatttgaagtcttcattaagaaatcaa
tttaactatgttgggttttttgagagctcatttgcaaagcattagtgaca
tttccaggcatagttcaagcctcctaactttgtcctgaaagagtcacatg
gtataaagcagcacaaagccattcattcactcctgacctctgtgtaagat
tgtaagacaaccactacccaaggacgggtcatttgtatactcaactttta
taatattttccgagcattcctttcataataggaggtcccctctgactcta
atgctttcctcattcacttgcaagtgagtgtggccttggtagtaccaccc
ttattcgagaagagcaatctaactgttattgatttatgacgctatgcatt
taaccacctctgcattttcccgtgtggatttatcaaaaatagatgggcct
aaacttgcatcattagagtagccttgctccagtttatataatctgaccta
tctgggaaattaatgaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_81419746_81420767
seq2: B6Ng01-093F20.b_161_1172

seq1  TTCACAAGATAGAAATGATTGCCTATTTTCATTCTTCAGCAAGTAGATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAGATAGAAATGATTGCCTATTTTCATTCTTCAGCAAGTAGATAA  50

seq1  CAGGAATTAGGGCAGTATGTGTTGGAGAAACTGTCTTTTCTCTAATATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATTAGGGCAGTATGTGTTGGAGAAACTGTCTTTTCTCTAATATAT  100

seq1  TTTTTGCACCTTTAAAATACAGATGATAATAACAATTTGGATTAATTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCACCTTTAAAATACAGATGATAATAACAATTTGGATTAATTTCT  150

seq1  TGCTACTCTGTCTTATTCTATTGGTTTATGTCCCTGCTTTTGTGACACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTCTGTCTTATTCTATTGGTTTATGTCCCTGCTTTTGTGACACCA  200

seq1  CCCTGTTATTTTTGTCACTATGGCTCTTTAGTATAATTTGAAATCAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTATTTTTGTCACTATGGCTCTTTAGTATAATTTGAAATCAAGAA  250

seq1  TAATGATATCGCCTACAATGCTCTATGATACCAGCTCAGCAGTTCTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATATCGCCTACAATGCTCTATGATACCAGCTCAGCAGTTCTTTTA  300

seq1  ATATTTGCAATCTTTTGTGCTTTATATGAACTTCAGGATTTTTATTATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGCAATCTTTTGTGCTTTATATGAACTTCAGGATTTTTATTATGA  350

seq1  TGCTGAATATAATTGTAACTTAATGGAGATTGAATTAATCTCATGGAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAATATAATTGTAACTTAATGGAGATTGAATTAATCTCATGGAGTG  400

seq1  CATTTGATAATACAGTGGTTTTTAAAATAGTAATTCCACTGGTTCACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGATAATACAGTGGTTTTTAAAATAGTAATTCCACTGGTTCACTGA  450

seq1  AATTTAGATCCCTCTGTCTTCTGTTCTTTTCATTTTTTTTTCTTTAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGATCCCTCTGTCTTCTGTTCTTTTCATTTTTTTTTCTTTAAAAA  500

seq1  GTTCCTGGTATTTTTTATTAATTTCTGCAACTTATTACTTTTGTGAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGGTATTTTTTATTAATTTCTGCAACTTATTACTTTTGTGAAAAT  550

seq1  GTTTGGTGGACAGTTGAGGATCTCTTATGTATAGAATCACAACAAAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTGGACAGTTGAGGATCTCTTATGTATAGAATCACAACAAAATTT  600

seq1  GTCTCCTTCTTTTCTTATTTGATTACTTTCCCTTACTTGTTTTTCTTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTTCTTTTCTTATTTGATTACTTTCCCTTACTTGTTTTTCTTTAG  650

seq1  GGCTCTGGCTAAGAATTCAAGCAGTATACTGAATAAGCAGCAAAGAGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGGCTAAGAATTCAAGCAGTATACTGAATAAGCAGCAAAGAGTGT  700

seq1  CAACTCTCTGATGGTAGAAGGAACGTTCTATTCCCTTATTCAGTATAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTCTGATGGTAGAAGGAACGTTCTATTCCCTTATTCAGTATAATG  750

seq1  TTGGCTACAGATTTATCACATATGCCCTTGGTTATTTTGAGGTACAAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTACAGATTTATCACATATGCCCTTGGTTATTTTGAGGTACAAACT  800

seq1  TTTAATTGCCAATTTCTTCAGCACTTTTATTGTTAGAGAATCTTGCACAC  850
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTAATTGCCAATTTCTTCAGCACTTTTA-TGTTAGAGAATCTTGCACAC  849

seq1  TGTCAAAGGACTCTTGTACATCTATCAATATGACCATGTGATTTCTGTTC  900
      ||||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  TGTCAAAGGACTC-TGTACATCTATCAATATGACCATGTGATTTCTG-TC  897

seq1  CTGAGTCTCTTTATGCACTGTGTTCCATCTATTGATTTGCATATGTTGAA  950
      ||||||||| ||||||||||   |||||||| ||||||||||||| || |
seq2  CTGAGTCTC-TTATGCACTGGTGTCCATCTA-TGATTTGCATATGGTG-A  944

seq1  TCATCCTTGGATCCCTTTATGA-AG-TCTGCTTATGGTATATGAACTTAT  998
      |||||  ||||| ||||||||| || ||||| ||||| ||    ||||||
seq2  TCATC--TGGAT-CCTTTATGAGAGTTCTGC-TATGGAAT---GACTTAT  987

seq1  TTATTGTACTG-ATGAATTTGGCTT  1022
      |||    |||| |||||||||||||
seq2  TTAAATGACTGAATGAATTTGGCTT  1012

seq1: chr5_81555942_81557078
seq2: B6Ng01-093F20.g_69_1187 (reverse)

seq1  AATTCATTAATCTTCCAGATATGATACAGGATTAATATAAAACTGGAGC-  49
      ||||||||||| | ||||||| |  |   |||| |||| |||||||||| 
seq2  AATTCATTAATTTCCCAGATAGGTCA---GATT-ATAT-AAACTGGAGCA  45

seq1  AGGCTACTCTAATGAATGCCAAGTTTAATGCCCAATCTATTTTTTGAATA  99
      |||||||||||||| ||| ||||||||  | || ||||| |||||||  |
seq2  AGGCTACTCTAATG-ATG-CAAGTTTA--GGCCCATCTA-TTTTTGATAA  90

seq1  ATCCACACGGGAAAATTGCAGAGTGTGTAAATTGCATAGCCGTCATAAAT  149
      ||||||||||||||| |||||||   || || ||||||| ||||||||||
seq2  ATCCACACGGGAAAA-TGCAGAGGTGGTTAAATGCATAG-CGTCATAAAT  138

seq1  CAATAACAGTTAGATTGCTCTGTCTCGGATAAGGGGTGGTACTACCAAGG  199
      ||||||||||||||||||||| ||||| |||| |||||||||||||||||
seq2  CAATAACAGTTAGATTGCTCT-TCTCGAATAA-GGGTGGTACTACCAAGG  186

seq1  CCACAACTCACTTGCAAGTGAATGAGGAAAAGCATTTAGAGTCAGAGGGG  249
      |||| |||||||||||||||||||||| |||||| |||||||||||||||
seq2  CCAC-ACTCACTTGCAAGTGAATGAGG-AAAGCA-TTAGAGTCAGAGGGG  233

seq1  ACCTCCTATTAATGAAAGGAAATGCTCGGAAAATTATTATAAAAGTTGAG  299
      |||||||||| |||||||| ||||||||||||| ||||||||||||||||
seq2  ACCTCCTATT-ATGAAAGG-AATGCTCGGAAAA-TATTATAAAAGTTGAG  280

seq1  TATACAAATGACCCGTCCCTGGGTAGTGGTTGTCTTACAATCTTACACAG  349
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TATACAAATGACCCGTCCTTGGGTAGTGGTTGTCTTACAATCTTACACAG  330

seq1  AGGTCAGGAGTGAATGAATGGCTTTGTGCTGCTTTATACCATGTGACTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGGAGTGAATGAATGGCTTTGTGCTGCTTTATACCATGTGACTCT  380

seq1  TTCAGGACAAAGTTAGGAGGCTTGAACTATGCCTGGAAATGTCACTAATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGACAAAGTTAGGAGGCTTGAACTATGCCTGGAAATGTCACTAATG  430

seq1  C-TTGCAAATGAGCTCTCAAAAAACCCAACATAGTTAAATTGATTTCTTA  498
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAAATGAGCTCTCAAAAAACCCAACATAGTTAAATTGATTTCTTA  480

seq1  ATGAAGACTTCAAATTTATCACAAAGTGTGGGATCATGGTCTCTGTTCTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGACTTCAAATTTATCACAAAGTGTGGGATCATGGTCTCTGTTCTC  530

seq1  ATCTCAGTTTTCTGTTAAAAATGTACCCCAGCCCAGGAATTTGTCATTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGTTTTCTGTTAAAAATGTACCCCAGCCCAGGAATTTGTCATTTC  580

seq1  TTTAAAAGGAAAGTTACTCTGTGAAGAGAACTTTCATTAAAAATACTAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGGAAAGTTACTCTGTGAAGAGAACTTTCATTAAAAATACTAAT  630

seq1  ATTACCTTGTAATCCAGTCCCCATTTGTACAATCTAATAAAGAAACATTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTTGTAATCCAGTCCCCATTTGTACAATCTAATAAAGAAACATTA  680

seq1  TTCAGCAATCAAATTTCTGTAAATCATAGATTTTGAAAATATTATCTATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAATCAAATTTCTGTAAATCATAGATTTTGAAAATATTATCTATA  730

seq1  TTGGCAATATAAGTTTTATGAAGAGATGTGAACACATTAAAAGATCTTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAATATAAGTTTTATGAAGAGATGTGAACACATTAAAAGATCTTTT  780

seq1  TTTTTTTCACATAATCTTATTAACTGCCAGGAAGTTTTGCCAAACAGATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCACATAATCTTATTAACTGCCAGGAAGTTTTGCCAAACAGATT  830

seq1  TTCAGGGGGGAAATCAGGCTACCCTAACTGTCCAAATGTTTTCTCACGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGGGGAAATCAGGCTACCCTAACTGTCCAAATGTTTTCTCACGTT  880

seq1  CCCAGCAAGCAGCTGCTGGGAGTCCCTGCCAGTAGTAAACCTTTCAGGCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAAGCAGCTGCTGGGAGTCCCTGCCAGTAGTAAACCTTTCAGGCA  930

seq1  GAATGTGAGCAGCTGCCAATCTCGTGTCAATATTGTAAATACACTTACAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGAGCAGCTGCCAATCTCGTGTCAATATTGTAAATACACTTACAG  980

seq1  CCATCCTCACTGGTGTCAACATTTCCTATTTCCCACAAAAGGGCTAGCAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTCACTGGTGTCAACATTTCCTATTTCCCACAAAAGGGCTAGCAG  1030

seq1  TTATCTTTCTTTGGTGTTTGCCCCCATTGACTGTCCTGGTGGGGAACAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTCTTTGGTGTTTGCCCCCATTGACTGTCCTGGTGGGGAACAAA  1080

seq1  AACCAAGTCAGCCGTTTTGACAAGAATTTCCTTGAATTC  1137
      |||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGTCAGCCGTTTTGACAAGAATTTCCTTGAATTC  1119