BAC Information

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BAC

Clone NameB6Ng01-093M17
Chromosome5 (Build37)
Map Location 69,429,266 - 69,545,138
singlet/doubletdoublet
Overlap geneLOC666996, Kctd8
Upstream geneAY616753
Downstream geneLOC545756, Yipf7, Guf1, Gnpda2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093M17.bB6Ng01-093M17.g
ACCDH905180DH905181
length1,1441,105
definitionDH905180|Mus musculus domesticus DNA, BAC clone: B6Ng01-093M17, 5' end.DH905181|Mus musculus domesticus DNA, BAC clone: B6Ng01-093M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,543,991 - 69,545,138)(69,429,266 - 69,430,379)
sequence
gaattcttctaaattctggtttcctttaaactatgttagtccacagaata
aggagaatgatgaaccatccaaaagacgtgctcactgagcttcgtttcta
acacactaggtagatctgaccaactatatacactctgccactttaggttc
taaaaatcaattattcaattattgaatctatggtagacaggaaaacaaat
agacaacaagatacttctttggcattattccactcttccatgtctgaaac
aaactaatgataagacaacaaaaaagaaaaagaaccaaaacaaacaaaca
aacaaacaaaaaacaaacaaaaaacaccaaagataaaaagaaaggaaaaa
aagcatttaccaacattttaatatcagggtttactaaattgtttgttttt
attttttaattacatttatttttgtatatctatgtacttgcatgtatcat
agtacacatttgatgcttgaaagacaattttcaggaatcacttctcccct
tcacccataggtactagggatagaattcaagttctcagactttacagtag
ttatcttcatttgttgagttattttgtaagccccatctgattttataaat
aaagttttcttggaaccaaaacatattcattcaatttacattttaccaat
tacctcaacactggagatggccagaccattgaatgtcagcatgtatattc
ataattaatttataaaacaaaagagagtttttaatgattatgaataaggg
tattgtggatttaatagtagaagaaattggaagatgaatttttaatattt
ttatttataccacatgtgggggtttttgccttatttttgatggaaatatt
aaaaacaatttctgtgttgctagtctagtgctgatctataggaaggggtg
gcttaagaaaatagaaaatcagagctcttcacagtttctttgtagaaaaa
gagcatgatatttgaagctttatgttgcagcttattcagatctgatattc
tagtatgacagtcaatcacaggtcatacatacgttgagtagcatttctaa
tccataaaacatgctttataaaagctgttatagatggaagactaccactg
tttaccatgaatggatcaagataaagacatggggtggtgctttt
gaattccagcactaaaatcttccatttacttatgagaaaaaaaaaaaaaa
cacttagatgggccaacattgaatacttgggaaaacactgatagtttttt
tctgtttactataatcaaagtaaaaataggatcaggtagtcatgtataca
acaaagacacaatataatcaatccatggctccatggagctaataacagct
agctcagccataaacaaattaaactttcttaatgtatgccagctgaatct
tacgcacatttaggataaagtggtttaaaatttaaaatttatcctggcga
tcgaggaagtcaataaaatctttttttcttctattttcttctagtgtttg
tttcctctatttctttgtcaaatatccataggattgttgcatgagtaaaa
cgtaaataattaaataaataagataccatttcctaggctatcaaccatat
gcacatatgcattatatgtttgcaaatacatgtattgaggaatccaaaca
tgttctcatttgatttggaggttattacaaaacaatcatgggtgactcag
aataaggaaacagaaaatcctaaacagtgagttatataatgttctttgaa
tattttattttatgctgtttaattgggtaagctaagacaagaatcatgag
gattcccttatcttaaggaataagaattatgtattttttactatgccttt
gtattcagttaccttaaggcttgaatattttgaaagagtttacttattaa
tcatgatgatttttatattataaagaacaatacaatgtcattccaatgtc
tcaagtgctgtcataaagtcatcttgtgtgcttattttattgctaatcat
ccttattaccatttgtgagagaggaacaaatataaggcatcatgacaaat
atgaggtcttcagtaacttctggttcaaattcactcaaatgtgagttcaa
atgtctatcaaattcagtcttatgtatttatacttgttagcaccagaaat
ttttcatgttatcttataaattaatattcagaataaaaaataaattgaca
tgtcagaatctagtgtccaggaaagggatttactttaattatttttattt
tatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_69543991_69545138
seq2: B6Ng01-093M17.b_46_1189 (reverse)

seq1  AAAAGCA-CAACACATGTCTTTATCCTTTGATCCATTCATTGGTAAACAG  49
      ||||||| || | ||||||||||||  |||||||||||| ||||||||||
seq2  AAAAGCACCACCCCATGTCTTTATC--TTGATCCATTCA-TGGTAAACAG  47

seq1  TTGGTAGTCTTCCATCTATAACAGCTTTTATAAAGCATGTTTTATTGGGA  99
       ||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  -TGGTAGTCTTCCATCTATAACAGCTTTTATAAAGCATGTTTTAT--GGA  94

seq1  TATAGAAATGCTACTC-ACGTATGTATGACCTGTGATTGACTGTTCATAC  148
      | |||||||||||||| |||||||||||||||||||||||||| ||||||
seq2  T-TAGAAATGCTACTCAACGTATGTATGACCTGTGATTGACTG-TCATAC  142

seq1  TAGAATATCAGATCTGAAT-AGCTGCAACATAAAGCTTCAAATATTCATG  197
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  TAGAATATCAGATCTGAATAAGCTGCAACATAAAGCTTCAAATA-TCATG  191

seq1  CTCTTTTTCTACAAAG-AACTGTGGAGAGCTCTGATTTTCTATTTTCTTA  246
      |||||||||||||||| ||||||| |||||||||||||||||||||||||
seq2  CTCTTTTTCTACAAAGAAACTGTGAAGAGCTCTGATTTTCTATTTTCTTA  241

seq1  AGCCACCCCTTCCTATAGATCAGCACTAGACTAGCAACACAG-AATTGTT  295
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGCCACCCCTTCCTATAGATCAGCACTAGACTAGCAACACAGAAATTGTT  291

seq1  TTTAATATTTCCATCAAAAATAAGGCAAAAACCCCCACATGTGGTATAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATTTCCATCAAAAATAAGGCAAAAACCCCCACATGTGGTATAAA  341

seq1  TAAAAATATTAAAAATTCATCTTCCAATTTCTTCTACTATTAAATCCACA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATATTAAAAATTCATCTTCCAATTTCTTCTACTATTAAATCCACA  391

seq1  ATACCCTTATTCATAATCATTAAAAACTCTCTTTTGTTTTATAAATTAAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTTATTCATAATCATTAAAAACTCTCTTTTGTTTTATAAATTAAT  441

seq1  TATGAATATACATGCTGACATTCAATGGTCTGGCCATCTCCAGTGTTGAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATATACATGCTGACATTCAATGGTCTGGCCATCTCCAGTGTTGAG  491

seq1  GTAATTGGTAAAATGTAAATTGAATGAATATGTTTTGGTTCCAAGAAAAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGGTAAAATGTAAATTGAATGAATATGTTTTGGTTCCAAGAAAAC  541

seq1  TTTATTTATAAAATCAGATGGGGCTTACAAAATAACTCAACAAATGAAGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATAAAATCAGATGGGGCTTACAAAATAACTCAACAAATGAAGA  591

seq1  TAACTACTGTAAAGTCTGAGAACTTGAATTCTATCCCTAGTACCTATGGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTACTGTAAAGTCTGAGAACTTGAATTCTATCCCTAGTACCTATGGG  641

seq1  TGAAGGGGAGAAGTGATTCCTGAAAATTGTCTTTCAAGCATCAAATGTGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGGAGAAGTGATTCCTGAAAATTGTCTTTCAAGCATCAAATGTGT  691

seq1  ACTATGATACATGCAAGTACATAGATATACAAAAATAAATGTAATTAAAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGATACATGCAAGTACATAGATATACAAAAATAAATGTAATTAAAA  741

seq1  AATAAAAACAAACAATTTAGTAAACCCTGATATTAAAATGTTGGTAAATG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAACAAACAATTTAGTAAACCCTGATATTAAAATGTTGGTAAATG  791

seq1  CTTTTTTTCCTTTCTTTTTATCTTTGGTGTTTTTTGTTTGTTTTTTGTTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTCCTTTCTTTTTATCTTTGGTGTTTTTTGTTTGTTTTTTGTTT  841

seq1  GTTTGTTTGTTTGTTTTGGTTCTTTTTCTTTTTTGTTGTCTTATCATTAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTTGTTTTGGTTCTTTTTCTTTTTTGTTGTCTTATCATTAG  891

seq1  TTTGTTTCAGACATGGAAGAGTGGAATAATGCCAAAGAAGTATCTTGTTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCAGACATGGAAGAGTGGAATAATGCCAAAGAAGTATCTTGTTG  941

seq1  TCTATTTGTTTTCCTGTCTACCATAGATTCAATAATTGAATAATTGATTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTGTTTTCCTGTCTACCATAGATTCAATAATTGAATAATTGATTT  991

seq1  TTAGAACCTAAAGTGGCAGAGTGTATATAGTTGGTCAGATCTACCTAGTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACCTAAAGTGGCAGAGTGTATATAGTTGGTCAGATCTACCTAGTG  1041

seq1  TGTTAGAAACGAAGCTCAGTGAGCACGTCTTTTGGATGGTTCATCATTCT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGAAACGAAGCTCAGTGAGCACGTCTTTTGGATGGTTCATCATTCT  1091

seq1  CCTTATTCTGTGGACTAACATAGTTTAAAGGAAACCAGAATTTAGAAGAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTCTGTGGACTAACATAGTTTAAAGGAAACCAGAATTTAGAAGAA  1141

seq1  TTC  1148
      |||
seq2  TTC  1144

seq1: chr5_69429266_69430379
seq2: B6Ng01-093M17.g_71_1175

seq1  GAATTCCAGCACTAAAATCTTCCATTTACTTATGAGAAAAAAAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCACTAAAATCTTCCATTTACTTATGAGAAAAAAAAAAAAAA  50

seq1  CACTTAGATGGGCCAACATTGAATACTTGGGAAAACACTGATAGTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGATGGGCCAACATTGAATACTTGGGAAAACACTGATAGTTTTTT  100

seq1  TCTGTTTACTATAATCAAAGTAAAAATAGGATCAGGTAGTCATGTATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTACTATAATCAAAGTAAAAATAGGATCAGGTAGTCATGTATACA  150

seq1  ACAAAGACACAATATAATCAATCCATGGCTCCATGGAGCTAATAACAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGACACAATATAATCAATCCATGGCTCCATGGAGCTAATAACAGCT  200

seq1  AGCTCAGCCATAAACAAATTAAACTTTCTTAATGTATGCCAGCTGAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGCCATAAACAAATTAAACTTTCTTAATGTATGCCAGCTGAATCT  250

seq1  TACGCACATTTAGGATAAAGTGGTTTAAAATTTAAAATTTATCCTGGCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCACATTTAGGATAAAGTGGTTTAAAATTTAAAATTTATCCTGGCGA  300

seq1  TCGAGGAAGTCAATAAAATCTTTTTTTCTTCTATTTTCTTCTAGTGTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGAAGTCAATAAAATCTTTTTTTCTTCTATTTTCTTCTAGTGTTTG  350

seq1  TTTCCTCTATTTCTTTGTCAAATATCCATAGGATTGTTGCATGAGTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTATTTCTTTGTCAAATATCCATAGGATTGTTGCATGAGTAAAA  400

seq1  CGTAAATAATTAAATAAATAAGATACCATTTCCTAGGCTATCAACCATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAATAATTAAATAAATAAGATACCATTTCCTAGGCTATCAACCATAT  450

seq1  GCACATATGCATTATATGTTTGCAAATACATGTATTGAGGAATCCAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATATGCATTATATGTTTGCAAATACATGTATTGAGGAATCCAAACA  500

seq1  TGTTCTCATTTGATTTGGAGGTTATTACAAAACAATCATGGGTGACTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCATTTGATTTGGAGGTTATTACAAAACAATCATGGGTGACTCAG  550

seq1  AATAAGGAAACAGAAAATCCTAAACAGTGAGTTATATAATGTTCTTTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGAAACAGAAAATCCTAAACAGTGAGTTATATAATGTTCTTTGAA  600

seq1  TATTTTATTTTATGCTGTTTAATTGGGTAAGCTAAGACAAGAATCATGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTTTATGCTGTTTAATTGGGTAAGCTAAGACAAGAATCATGAG  650

seq1  GATT-CCTTATCTTAAGGAATAAGAATTATGTATTTTTTACTATGCCTTT  699
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCTTATCTTAAGGAATAAGAATTATGTATTTTTTACTATGCCTTT  700

seq1  GTATTCAGTTACCTTAAGGCTTGAATATTTTGAAAGAGTTTACTTATTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCAGTTACCTTAAGGCTTGAATATTTTGAAAGAGTTTACTTATTAA  750

seq1  TCATGATGATTTTTATATTATAAAGAACAATACAATGTCATTCCAATGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATGATTTTTATATTATAAAGAACAATACAATGTCATTCCAATGTC  800

seq1  TCAAGTGCTGTCAT-AAGTCATCTTGTGTGCTTATTTTATTTGCTAATCA  848
      |||||||||||||| |||||||||||||||||||||||| ||||||||||
seq2  TCAAGTGCTGTCATAAAGTCATCTTGTGTGCTTATTTTA-TTGCTAATCA  849

seq1  TCCTTATTACCATTTGTGAGAGAGGAACAAATATTAAGGCATCATGACAA  898
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCCTTATTACCATTTGTGAGAGAGGAACAAATA-TAAGGCATCATGACAA  898

seq1  ATATGAGGTCTTCAGTAACTTCTGGTTCAAAATTCACTCAAAATGT-AGT  947
      |||||||||||||||||||||||||||| |||||||||| |||||| |||
seq2  ATATGAGGTCTTCAGTAACTTCTGGTTC-AAATTCACTC-AAATGTGAGT  946

seq1  TCATATGTCTATCAAATTCAGTTCTTATGTATTTATACTTGTTAGCACCA  997
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCAAATGTCTATCAAATTCAG-TCTTATGTATTTATACTTGTTAGCACCA  995

seq1  GAAATTTTTCATG-TATCTTATAAAATTAATATTCAG-ATAAAATATATA  1045
      ||||||||||||| |||||||| |||||||||||||| |||||| ||| |
seq2  GAAATTTTTCATGTTATCTTAT-AAATTAATATTCAGAATAAAAAATA-A  1043

seq1  ATTGACATGTTCAGTAATC--ATGTTCAGTAATAGGTATTTTTACTTTTT  1093
      ||||||||| |||| ||||   ||| ||| || ||| |  |||||  |||
seq2  ATTGACATG-TCAG-AATCTAGTGTCCAGGAA-AGGGA--TTTAC--TTT  1086

seq1  AATTTTATTTTTATTTTATGG  1114
      ||  |||||||||||||||||
seq2  AA--TTATTTTTATTTTATGG  1105