BAC Information

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BAC

Clone NameB6Ng01-094D16
Chromosome5 (Build37)2 (Build37)
Map Location 51,754,961 - 51,756,12826,657,119 - 26,657,186
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG637307, LOC100041015, LOC242987, EG624734, LOC666265, LOC100041059
Downstream genePpargc1a, Dhx15, Sod3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094D16.bB6Ng01-094D16.g
ACCDH905505DH905506
length1,16080
definitionDH905505|Mus musculus domesticus DNA, BAC clone: B6Ng01-094D16, 5' end.DH905506|Mus musculus domesticus DNA, BAC clone: B6Ng01-094D16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(51,754,961 - 51,756,128)(26,657,119 - 26,657,186)
sequence
gaattcctctctatattgtgttttttttagtaaaaaatatacaattttct
tttttcagctttaatctgtacaagtccttataattagaattgacagggtg
ccaaaatcctatctccacaaaacccacatctgaataatccaacatgttta
cattaaaaaatgctggcttgaagctggttcaggcaagagataacatactc
acaagtactctctcaatttgttttataatgctataggaacctctccttct
atctgctatagcacttataagagatctatgcaggcaaaggtcttgtatgt
cttcttaactgatagattctcagaacctagtattttgcctagtttgatgc
tcagtgaaggctagttctgtgattggtcagattcaactctttctagccct
ttgtcctaatggttcctcaatgggtagaacagacactaagaatgatgaac
taatgtagcctgagctctttctgtcactcactactctttctaactgacta
aacacttctatgagccctgcatgcataccttttgctaggcacaatcaagg
cagacaagatacatgtgggaaaactgaaagctacatgtacctcaaggcag
agctttatagaaatgaaaacaaaacaataaatttgcagtgggctgtttgc
tgagaggctgggggaggtagaatgtctagattggtcacattgggcagtgg
cacaaagagatgaaactagttactaggagcactatgccctaggctagtga
tgttcaaccttcctaaagctgaccctttaatacagttcttcatgttggag
tgaccataaaattattaatggctacctcgaaactatcattttgctactaa
gtggtccccacagatctcaagccctcaaaaatattgtattttctgatggg
aggcgacccaacaggttgagaaccgcctgctctaggtagttagtaatagc
accttgaaaggcttgacaaggaccatgtggatttgtttaggaacagagga
aggttggattagctattagttgatggaaaggagcaagcaaaggaggaaac
agtcaagtccagcagatcttgatatctgctatgtgtgattaacatcttaa
tgattctctttcattaaatgcagaatttatggtttttttttttgatgttg
ttggtggggt
acctgagtgctgacccattccttgatagcagccactcacaggataatgga
attatcaaatattattagccccagggctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_51754961_51756128
seq2: B6Ng01-094D16.b_38_1197 (reverse)

seq1  ACCCCAACAACAACAACAAAAAAAAAAAACCATAAATTCTGGCATTTAAT  50
      |||||| |||||||| | |||||||||||||||||||||| |||||||||
seq2  ACCCCACCAACAACATC-AAAAAAAAAAACCATAAATTCT-GCATTTAAT  48

seq1  GAAAGAGATCTATTTAAAGATGTTAAACCAACCACATAGCAGATATCCAA  100
      ||||||||   |||  |||||||||| |    |||||||||||||| |||
seq2  GAAAGAGAATCATT--AAGATGTTAATC---ACACATAGCAGATAT-CAA  92

seq1  GATCTGCTGTGACTTGACTGTTTCCTCCCTTTGCTTGCTCCCTTTTTCCA  150
      ||||||||| |||||||||||||||| ||||||||||||||   ||||||
seq2  GATCTGCTG-GACTTGACTGTTTCCT-CCTTTGCTTGCTCC---TTTCCA  137

seq1  TCAACT-ATAGCT-ATTCAACCTTCCTCTTGTTCCTTATACAAATCCACA  198
      |||||| |||||| || ||||||||||| |||||| || |||||||||||
seq2  TCAACTAATAGCTAATCCAACCTTCCTC-TGTTCC-TAAACAAATCCACA  185

seq1  TGGTCCTTTGTC-AGCCTTTC-AGGTGCTATTACT-ACTACCTAGAGCA-  244
      |||||| ||||| |||||||| ||||||||||||| ||||||||||||| 
seq2  TGGTCC-TTGTCAAGCCTTTCAAGGTGCTATTACTAACTACCTAGAGCAG  234

seq1  GCGGTTCTCAACCTG-TGGGTCGCCT-CCATCAGAAAATAC-ATATTTTT  291
      ||||||||||||||| |||||||||| |||||||||||||| ||||||||
seq2  GCGGTTCTCAACCTGTTGGGTCGCCTCCCATCAGAAAATACAATATTTTT  284

seq1  GAAGGGCTTGAGATCTGT-GGGACCACTTAGTAGCAAAATGATAGTTTCG  340
      | |||||||||||||||| |||||||||||||||||||||||||||||||
seq2  G-AGGGCTTGAGATCTGTGGGGACCACTTAGTAGCAAAATGATAGTTTCG  333

seq1  AGGTAGCCATTAAATAATTTTATGGTCACTCCAACATGAAGAACTGTATT  390
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGCCATT-AATAATTTTATGGTCACTCCAACATGAAGAACTGTATT  382

seq1  AAAGGGTCAGCTTTAGGAAGGTTGAACATCACTAGCCTAGGGCATAGTGC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTCAGCTTTAGGAAGGTTGAACATCACTAGCCTAGGGCATAGTGC  432

seq1  TCCTAGTAACTAGTTTCATCTCTTTGTGCCACTGCCCAATGTGACCAATC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTAACTAGTTTCATCTCTTTGTGCCACTGCCCAATGTGACCAATC  482

seq1  TAGACATTCTACCTCCCCCAGCCTCTCAGCAAACAGCCCACTGCAAATTT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATTCTACCTCCCCCAGCCTCTCAGCAAACAGCCCACTGCAAATTT  532

seq1  ATTGTTTTGTTTTCATTTCTATAAAGCTCTGCCTTGAGGTACATGTAGCT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTGTTTTCATTTCTATAAAGCTCTGCCTTGAGGTACATGTAGCT  582

seq1  TTCAGTTTTCCCACATGTATCTTGTCTGCCTTGATTGTGCCTAGCAAAAG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTTTCCCACATGTATCTTGTCTGCCTTGATTGTGCCTAGCAAAAG  632

seq1  GTATGCATGCAGGGCTCATAGAAGTGTTTAGTCAGTTAGAAAGAGTAGTG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCATGCAGGGCTCATAGAAGTGTTTAGTCAGTTAGAAAGAGTAGTG  682

seq1  AGTGACAGAAAGAGCTCAGGCTACATTAGTTCATCATTCTTAGTGTCTGT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAGAAAGAGCTCAGGCTACATTAGTTCATCATTCTTAGTGTCTGT  732

seq1  TCTACCCATTGAGGAACCATTAGGACAAAGGGCTAGAAAGAGTTGAATCT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCATTGAGGAACCATTAGGACAAAGGGCTAGAAAGAGTTGAATCT  782

seq1  GACCAATCACAGAACTAGCCTTCACTGAGCATCAAACTAGGCAAAATACT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAATCACAGAACTAGCCTTCACTGAGCATCAAACTAGGCAAAATACT  832

seq1  AGGTTCTGAGAATCTATCAGTTAAGAAGACATACAAGACCTTTGCCTGCA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTGAGAATCTATCAGTTAAGAAGACATACAAGACCTTTGCCTGCA  882

seq1  TAGATCTCTTATAAGTGCTATAGCAGATAGAAGGAGAGGTTCCTATAGCA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTCTTATAAGTGCTATAGCAGATAGAAGGAGAGGTTCCTATAGCA  932

seq1  TTATAAAACAAATTGAGAGAGTACTTGTGAGTATGTTATCTCTTGCCTGA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAACAAATTGAGAGAGTACTTGTGAGTATGTTATCTCTTGCCTGA  982

seq1  ACCAGCTTCAAGCCAGCATTTTTTAATGTAAACATGTTGGATTATTCAGA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTTCAAGCCAGCATTTTTTAATGTAAACATGTTGGATTATTCAGA  1032

seq1  TGTGGGTTTTGTGGAGATAGGATTTTGGCACCCTGTCAATTCTAATTATA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTTTTGTGGAGATAGGATTTTGGCACCCTGTCAATTCTAATTATA  1082

seq1  AGGACTTGTACAGATTAAAGCTGAAAAAAGAAAATTGTATATTTTTTACT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTGTACAGATTAAAGCTGAAAAAAGAAAATTGTATATTTTTTACT  1132

seq1  AAAAAAAACACAATATAGAGAGGAATTC  1168
      ||||||||||||||||||||||||||||
seq2  AAAAAAAACACAATATAGAGAGGAATTC  1160

seq1: chr2_26657119_26657186
seq2: B6Ng01-094D16.g_88_152 (reverse)

seq1  ATAGCCCTGGGGCTAATTATATTTGACGTTAATGCCATTCTCCTGTGAGT  50
      ||||||||||||||||| ||||||||   |||| ||||| ||||||||||
seq2  ATAGCCCTGGGGCTAATAATATTTGA---TAATTCCATTATCCTGTGAGT  47

seq1  GGCTGCAAACAAGGAATG  68
      |||||| | |||||||||
seq2  GGCTGCTATCAAGGAATG  65