BAC Information

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BAC

Clone NameB6Ng01-094I23
Chromosome5 (Build37)
Map Location 40,075,511 - 40,259,866
singlet/doubletdoublet
Overlap geneHs3st1, EG665839
Upstream gene6820424L24Rik, Clnk, LOC384174
Downstream geneLOC100040502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094I23.bB6Ng01-094I23.g
ACCDH905747DH905748
length1,050724
definitionDH905747|Mus musculus domesticus DNA, BAC clone: B6Ng01-094I23, 5' end.DH905748|Mus musculus domesticus DNA, BAC clone: B6Ng01-094I23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,258,838 - 40,259,866)(40,075,511 - 40,076,231)
sequence
gaattctttaagggattgattcactaaagtaacactgtcatatccataaa
gactattttaaggtctttttcctgtgtgtcagctatgttggaatagtcag
ggcattctatggttgggctgatatgtttcagagatgacagtatgccttgg
atgttttttattgtatttttacatcaacttctgggcatcagggttttggg
aaattgtaattcttggtggtattatctattattggttgtactgggtgagt
gcttgttgcttggtttctgttgtcctcttcaattctggaccatgactctt
atatattgcctggtaaataatttttcagactcctgctaggtgtggcccta
cacgttccaagtaaaatgtgtgtctatgtattgggaaatgccactgagaa
atggggatgaacaggaatcagtgtctgaggggctgaaaaaggaagaagaa
aagaaaaatgttttaccaggatctgcaaggtctcccccaaatgaaggcag
attaatactcaattgtattaaactctaaaacttggggaaattccaacatc
acatgttgtttgttgcaaagaacatttataaattactccttactgttatg
aggtaggaaggtaaacatatgcaagagattttttttgtgtgtgtgacagt
tcgtctcaagaaacaatatgagctctactagcctgaggctatcaccagaa
acagactcttgagtcattgagtctggggtacctgaacattctgtattttc
catcaaatatccaagtgataccaatacccctgcatacagcctgactaaga
ggattgcatttgggagtgcaaagatttacagcgtatgatctaaacaaaaa
tagacaaaggctttaaacctttttaaagtcagtgctgctggggatttgca
ttaaatagccaaagtgaccaagctcccagatccaagtattgttttaagac
ttttctaatatagtgtcaaaaatattttccccagaagcacatttaaatat
ctattttatctaccccctcacggtaagaattatttggctacctttaaaaa

gaattcatgaaagcaactaaatgcacagagttagtgagtctcttctgagc
ccctcatcaggagctgcaggacattaccatccaccattgtttttatgcct
cttgccccatatccccatctggccagatggctctctttctcttgtattac
atagctttccctcacctatcagagtcttgctaattcttcatgacctgatc
catgtccctgagatgcttttcctagtctgaccactcgccccctcttattt
ctgactgcattaaccactttttcttcttgttatggagtctgcattttgta
tagcagtgttagttttctttcttatgcgctgatatgaattccatgctata
tacctttaatccatagactgaaatgcaaatattctccaagatggtgttag
gaagtagcctctcaggaaaattaggaagcatctttttgaatgagaatagt
tcctgtgtaagagaataaagagactagagacctctcatgagagagccttt
catgttctcacaacaagaagtggaccatttataagccaggaggtactcat
atcagaagctagaatctcttggtgctctggtcatgtaactctggtcccat
aaattgaaagacactgaatatttaatatttgtaagctattgcatgtatgg
cattctgtgacaaacagccagaaaatgagacacatgccttctctctctct
ctctctctctctctctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_40258838_40259866
seq2: B6Ng01-094I23.b_45_1092 (reverse)

seq1  TTTTTATAGGTAGCC-AATAAATC-TACATTGAGGGGTTGAATAAAAT-G  47
      |||||| |||||||| ||||| || |||  ||||||| |  ||||||| |
seq2  TTTTTAAAGGTAGCCAAATAATTCTTACCGTGAGGGGGTAGATAAAATAG  50

seq1  A-AATTAAATGTGCCTTCTGGGG-AAATAATTTTGACACTATCATAGAAA  95
      | | ||||||||| ||||||||| ||||| ||||||||||||  ||||||
seq2  ATATTTAAATGTG-CTTCTGGGGAAAATATTTTTGACACTATATTAGAAA  99

seq1  AGTC-TAAAAC-ATAC-TCGATCTGGGAGCTT-GTCACTTTGGCTATTTA  141
      |||| |||||| |||| | ||||||||||||| |||||||||||||||||
seq2  AGTCTTAAAACAATACTTGGATCTGGGAGCTTGGTCACTTTGGCTATTTA  149

seq1  ATGCAAATCCCCAGCAGCACTGACTTTAAAAAGG-TTAAAGCC-TTGTCT  189
      |||||||||||||||||||||||||||||||||| |||||||| ||||||
seq2  ATGCAAATCCCCAGCAGCACTGACTTTAAAAAGGTTTAAAGCCTTTGTCT  199

seq1  A-TTTTGTTTAGATCATACGCTGTAAATCTTTGCACT-CCAAATGCAATC  237
      | ||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATTTTTGTTTAGATCATACGCTGTAAATCTTTGCACTCCCAAATGCAATC  249

seq1  CTC-TAGTCA-GCTGTATGCA-GGGTATTGGTATCACTTGGATATTTGAT  284
      ||| |||||| |||||||||| ||||||||||||||||||||||||||||
seq2  CTCTTAGTCAGGCTGTATGCAGGGGTATTGGTATCACTTGGATATTTGAT  299

seq1  GG-AAATACAGAATG-TCAGGTACCCCAGACTCAATGACTCAAGAGTCTG  332
      || |||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGAAAATACAGAATGTTCAGGTACCCCAGACTCAATGACTCAAGAGTCTG  349

seq1  TTTCTGGTGATAGCCTCAGGCTAGTAGAGCTCATATTG-TTCTTGAGACG  381
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTCTGGTGATAGCCTCAGGCTAGTAGAGCTCATATTGTTTCTTGAGACG  399

seq1  AACTGTCACACACAC-AAAAAAATCTCTTGCATATGTTTACCTTCCTACC  430
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AACTGTCACACACACAAAAAAAATCTCTTGCATATGTTTACCTTCCTACC  449

seq1  TCATAACAGTAAGGAGTAATTTATAAATGTTCTTTGCAACAAACAACATG  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACAGTAAGGAGTAATTTATAAATGTTCTTTGCAACAAACAACATG  499

seq1  TGATGTTGGAATTTCCCCAAGTTTTAGAGTTTAATACAATTGAGTATTAA  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTGGAATTTCCCCAAGTTTTAGAGTTTAATACAATTGAGTATTAA  549

seq1  TCTGCCTTCATTTGGGGGAGACCTTGCAGATCCTGGTAAAACATTTTTCT  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTCATTTGGGGGAGACCTTGCAGATCCTGGTAAAACATTTTTCT  599

seq1  TTTCTTCTTCCTTTTTCAGCCCCTCAGACACTGATTCCTGTTCATCCCCA  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTTCCTTTTTCAGCCCCTCAGACACTGATTCCTGTTCATCCCCA  649

seq1  TTTCTCAGTGGCATTTCCCAATACATAGACACACATTTTACTTGGAACGT  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGTGGCATTTCCCAATACATAGACACACATTTTACTTGGAACGT  699

seq1  GTAGGGCCACACCTAGCAGGAGTCTGAAAAATTATTTACCAGGCAATATA  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGCCACACCTAGCAGGAGTCTGAAAAATTATTTACCAGGCAATATA  749

seq1  TAAGAGTCATGGTCCAGAATTGAAGAGGACAACAGAAACCAAGCAACAAG  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTCATGGTCCAGAATTGAAGAGGACAACAGAAACCAAGCAACAAG  799

seq1  CACTCACCCAGTACAACCAATAATAGATAATACCACCAAGAATTACAATT  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACCCAGTACAACCAATAATAGATAATACCACCAAGAATTACAATT  849

seq1  TCCCAAAACCCTGATGCCCAGAAGTTGATGTAAAAATACAATAAAAAACA  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAACCCTGATGCCCAGAAGTTGATGTAAAAATACAATAAAAAACA  899

seq1  TCCAAGGCATACTGTCATCTCTGAAACATATCAGCCCAACCATAGAATGC  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGCATACTGTCATCTCTGAAACATATCAGCCCAACCATAGAATGC  949

seq1  CCTGACTATTCCAACATAGCTGACACACAGGAAAAAGACCTTAAAATAGT  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTATTCCAACATAGCTGACACACAGGAAAAAGACCTTAAAATAGT  999

seq1  CTTTATGGATATGACAGTGTTACTTTAGTGAATCAATCCCTTAAAGAAT  1029
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGGATATGACAGTGTTACTTTAGTGAATCAATCCCTTAAAGAAT  1048

seq1: chr5_40075511_40076231
seq2: B6Ng01-094I23.g_71_794

seq1  GAATTCATGAAAGCAACTAAATGCACAGAGTTAGTGAGTCTCTTCTGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAAAGCAACTAAATGCACAGAGTTAGTGAGTCTCTTCTGAGC  50

seq1  CCCTCATCAGGAGCTGCAGGACATTACCATCCACCATTGTTTTTATGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATCAGGAGCTGCAGGACATTACCATCCACCATTGTTTTTATGCCT  100

seq1  CTTGCCCCATATCCCCATCTGGCCAGATGGCTCTCTTTCTCTTGTATTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCCATATCCCCATCTGGCCAGATGGCTCTCTTTCTCTTGTATTAC  150

seq1  ATAGCTTTCCCTCACCTATCAGAGTCTTGCTAATTCTTCATGACCTGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTTCCCTCACCTATCAGAGTCTTGCTAATTCTTCATGACCTGATC  200

seq1  CATGTCCCTGAGATGCTTTTCCTAGTCTGACCACTCGCCCCCTCTTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCCTGAGATGCTTTTCCTAGTCTGACCACTCGCCCCCTCTTATTT  250

seq1  CTGACTGCATTAACCACTTTTTCTTCTTGTTATGGAGTCTGCATTTTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGCATTAACCACTTTTTCTTCTTGTTATGGAGTCTGCATTTTGTA  300

seq1  TAGCAGTGTTAGTTTTCTTTCTTATGCGCTGATATGAATTCCATGCTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTGTTAGTTTTCTTTCTTATGCGCTGATATGAATTCCATGCTATA  350

seq1  TACCTTTAATCCATAGACTGAAATGCAAATATTCTCCAAGATGGTGTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTAATCCATAGACTGAAATGCAAATATTCTCCAAGATGGTGTTAG  400

seq1  GAAGTAGCCTCTCAGGAAAATTAGGAAGCATCTTTTTGAATGAGAATAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGCCTCTCAGGAAAATTAGGAAGCATCTTTTTGAATGAGAATAGT  450

seq1  TCCTGTGTAAGAGAATAAAGAGACTAGAGACCTCTCATGAGAGAGCCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTAAGAGAATAAAGAGACTAGAGACCTCTCATGAGAGAGCCTTT  500

seq1  CATGTTCTCACAACAAGAAGTGGACCATTTATAAGCCAGGAGGTACTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCTCACAACAAGAAGTGGACCATTTATAAGCCAGGAGGTACTCAT  550

seq1  ATCAGAAGCTAGAATCTCTTGGTGCTCTGGTCATGTAACTCTGGTCCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAGCTAGAATCTCTTGGTGCTCTGGTCATGTAACTCTGGTCCCAT  600

seq1  AAATTG-AAGACACTGAATATTTAATATTTGTAAGCTATTGCATGTATGG  649
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAAAGACACTGAATATTTAATATTTGTAAGCTATTGCATGTATGG  650

seq1  CATTCTGTGAC-AACAGCCAG-AAATGAGACACATGCCTTCTCTCTCTCT  697
      ||||||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  CATTCTGTGACAAACAGCCAGAAAATGAGACACATGCCTTCTCTCTCTCT  700

seq1  CTCTCTCTCTCTCTCTCTCTCTCT  721
      ||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCT  724