BAC Information

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BAC

Clone NameB6Ng01-094O04
Chromosome5 (Build37)
Map Location 62,813,119 - 62,911,818
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041524, G6pd2, LOC100041543
Downstream geneCentd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094O04.bB6Ng01-094O04.g
ACCDH905979DH905980
length1,1581,057
definitionDH905979|Mus musculus domesticus DNA, BAC clone: B6Ng01-094O04, 5' end.DH905980|Mus musculus domesticus DNA, BAC clone: B6Ng01-094O04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,813,119 - 62,814,300)(62,910,729 - 62,911,818)
sequence
gaattcctttctcccataagtcatttttgccaaagtattttatcaaaaac
agaaagaaaagtagcaagcaaacaaacaatgaatatatgttctttctgta
atcagatcccagatagacaggccaaatttgtaaggacacaggctccagaa
tcgagtaaagacagctaattcaatgattatggacatagtggttacatcta
atggttaatctgtaggaactcatcataacagactggtagcaattaattgg
aaagatatggaatagagtgcttgaggctgacttagaagtgatttatgtga
gcccagcactgtatacaccaagcaacggtgtttcacaactttaataatca
ctcaggagatggaagtaggtatattggaagttcaatgtcgttctcagctg
tgtaatcaatttgagaccagcttggactagagaccctgtctgaaaaaaaa
aaaaaagacaaagaaagcaagcaagaaagaacgaaagaaataaacacaca
caaacaacttattataacatacaaggtacatacttgctcctctggagatt
atcaccatgtgattattctctgctgtcatttgttgtagatgttgttatta
tagatttttcatttaagctcaacttaggacgatgtcattaggtaggggac
agaatctctctatgtgaaattttacaagcctcatcaactctttgtttttg
tgtgataatatacctcttacttctacaggctccttgagtaccaaggatta
tgagtgactgtatatgagaactgctaattataatgtctaagcagacaatt
cctttacaatttgtgacttttaaataaatattaaaatgcaataaattatt
gctaaaaaataaacatcaactctatcatctttcacctaaacatcatgtct
ttgactggaggcctttctcttgttactcaactgtctttaatttcactcca
aaaatacaaaaagcaaaatcaaatacatatttccccatgtcacagttact
aggacttgatatcacatcttagtgctgtgtataatgtgaatcaaagaatc
agggttctcagcaggatgcatctgcaatagctgggttcaatccacctgat
gaatttcacttataccctctaattacgagtaaaaggccatgcccttaatg
gctatctt
gaattcctcatttttcagttcctcaattccctgatttttcttacttcttc
ctcgcttgtttttattctccctctacctcattctatgtcttcatattctc
ctgcttctctcatttctgctttccctgtgcagggaatggcccctttccct
acattcctcgtcttcactccctgccgtccttcctttttccttattatctt
ctttctcctttttcttattcttgacagagttctacagttttaaagtttag
aattcagtgatcaattaaaactaaaaaacaattaggcattagttagcatt
gattactgtgcagatgagcctgatatatgtgctggatgtcattgactaat
gggcctggcttgttttctttcctcactctatccacagtaagaacagagga
aatgtatctttaactacaagagaatcacataagcagaaaacaatgaaatg
gccaagtgtagataaacactgcacatttttaaatattacattttcaaaaa
cagcgggagagatgctgtaaatactgaaaagtcaaatggtaatataaacc
aagaaaatgtaaggcattaggaagaagtgtgaagacactgcaggctgtga
atatctattcttgaaacagcagttccgaaactttggttagtacagtattt
aatgagacactattacttagaaacaagtagttatttaaatataatcaata
caatttgatgagaaggatttcaaagaaaatatgctttcttctatttaaaa
tgtgtgtacttctaagaagaccaacagtgtcaagtaacctggaccctggt
ggctcccaaaggagaccaaagagcttacctgatctaaacctaggccccct
gcacgcatgtaccagatgtatcatttggtcttcatgctggtccccaacac
tggagaggtgtccctgaactgtgtctcctgtgatctgttcctactgagcg
cctgtctgactcagtagagatgtgctagtctgcagtgactgattggcagg
tgggtgtaccagaggcttctccttatcagagggaagaagggatatggggg
aggagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_62813119_62814300
seq2: B6Ng01-094O04.b_48_1205

seq1  GAATTCCTTTCTCCCATAAGTCATTTTTGCCAAAGTATTTTATCAAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCTCCCATAAGTCATTTTTGCCAAAGTATTTTATCAAAAAC  50

seq1  AGAAAGAAAAGTAGCAAGCAAACAAACAATGAATATATGTTCTTTCTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAAGTAGCAAGCAAACAAACAATGAATATATGTTCTTTCTGTA  100

seq1  ATCAGATCCCAGATAGACAGGCCAAATTTGTAAGGACACAGGCTCCAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATCCCAGATAGACAGGCCAAATTTGTAAGGACACAGGCTCCAGAA  150

seq1  TCGAGTAAAGACAGCTAATTCAATGATTATGGACATAGTGGTTACATCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGTAAAGACAGCTAATTCAATGATTATGGACATAGTGGTTACATCTA  200

seq1  ATGGTTAATCTGTAGGAACTCATCATAACAGACTGGTAGCAATTAATTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTAATCTGTAGGAACTCATCATAACAGACTGGTAGCAATTAATTGG  250

seq1  AAAGATATGGAATAGAGTGCTTGAGGCTGACTTAGAAGTGATTTATGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATATGGAATAGAGTGCTTGAGGCTGACTTAGAAGTGATTTATGTGA  300

seq1  GCCCAGCACTGTATACACCAAGCAACGGTGTTTCACAACTTTAATAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCACTGTATACACCAAGCAACGGTGTTTCACAACTTTAATAATCA  350

seq1  CTCAGGAGATGGAAGTAGGTATATTGGAAGTTCAATGTCGTTCTCAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAGATGGAAGTAGGTATATTGGAAGTTCAATGTCGTTCTCAGCTG  400

seq1  TGTAATCAATTTGAGACCAGCTTGGACTAGAGACCCTGTCTGAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCAATTTGAGACCAGCTTGGACTAGAGACCCTGTCTGAAAAAAAA  450

seq1  AAAAAAGACAAAGAAAGCAAGCAAGAAAGAACGAAAGAAATAAACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGACAAAGAAAGCAAGCAAGAAAGAACGAAAGAAATAAACACACA  500

seq1  CAAACAACTTATTATAACATACAAGGTACATACTTGCTCCTCTGGAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACTTATTATAACATACAAGGTACATACTTGCTCCTCTGGAGATT  550

seq1  ATCACCATGTGATTATTCTCTGCTGTCATTTGTTGTAGATGTTGTTATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCATGTGATTATTCTCTGCTGTCATTTGTTGTAGATGTTGTTATTA  600

seq1  TAGATTTTTCATTTAAGCTCAACTTAGGACGATGTCATTAGGTAGGGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTTTCATTTAAGCTCAACTTAGGACGATGTCATTAGGTAGGGGAC  650

seq1  AGAATCTCTCTATGTGAAATTTTACAAGCCTCATCAACTCTTTGTTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTCTCTATGTGAAATTTTACAAGCCTCATCAACTCTTTGTTTTTG  700

seq1  TGTGATAATATACCTCTTACTTCTACAGGCTCCTTGAGTACCAAGGATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATAATATACCTCTTACTTCTACAGGCTCCTTGAGTACCAAGGATTA  750

seq1  TGAGTGACTGTATATGAGAACTGCTAATTATAATGTCTAAGCAGACAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGACTGTATATGAGAACTGCTAATTATAATGTCTAAGCAGACAATT  800

seq1  CCTTTACAATTTGTGACTTTTAAATAAATATTAAAATGCAATAAATTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACAATTTGTGACTTTTAAATAAATATTAAAATGCAATAAATTATT  850

seq1  GCTAAAAAATAAACATCAACTCTATCATCTTTTCACCTAAACATCATGTC  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCTAAAAAATAAACATCAACTCTATCATC-TTTCACCTAAACATCATGTC  899

seq1  TTTGACTGGAGGCCTTTCTCTTGTTACTCAACTGTCTTTAATTTCACTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTGGAGGCCTTTCTCTTGTTACTCAACTGTCTTTAATTTCACTCC  949

seq1  AAAAAATACAAAAAGCAAAATCAAATACATATTTCCCCCATGTCCACCAG  1000
       ||||||||||||||||||||||||||||||||| |||||||||   |||
seq2  -AAAAATACAAAAAGCAAAATCAAATACATATTT-CCCCATGTC--ACAG  995

seq1  TTTACCTAGGACTTTGATATCAACATCCTTAGTGCTGTTGTTATAATGTG  1050
      ||   ||||||| |||||||| |||| |||||||||||   |||||||||
seq2  TT--ACTAGGAC-TTGATATC-ACAT-CTTAGTGCTGT--GTATAATGTG  1038

seq1  AATCCAAAGATCCAGGGTTCTCAGCAAGATGCATCTGCAAATAGCTGGGT  1100
      ||| ||||||  |||||||||||||| ||||||||||| |||||||||||
seq2  AAT-CAAAGAATCAGGGTTCTCAGCAGGATGCATCTGC-AATAGCTGGGT  1086

seq1  TCACTTCCACCCTGGATGAA-TTCACTTATACCCTCCTAGATTACAGAGT  1149
      |||  ||||||   |||||| |||||||||||||| ||| ||||| ||||
seq2  TCA-ATCCACC--TGATGAATTTCACTTATACCCT-CTA-ATTAC-GAGT  1130

seq1  AAAAACAGCCATGCCTCTTATAATGGCTATCTT  1182
      ||||   |||||||| ||  |||||||||||||
seq2  AAAA--GGCCATGCC-CT--TAATGGCTATCTT  1158

seq1: chr5_62910729_62911818
seq2: B6Ng01-094O04.g_69_1125 (reverse)

seq1  AGCTCCTCCCCCATATCCCCTCTCTTTCTCCTCTGATAAGGAGAAGGCCC  50
      ||||||||||||||||||| ||   ||| |||||||||||||||||   |
seq2  AGCTCCTCCCCCATATCCCTTC---TTC-CCTCTGATAAGGAGAAG---C  43

seq1  CTCTGGGTACCAACCCACCCTGGCAAATCAAGTCACTGCAGAACTAGGCA  100
      |||| |||||  |||||||   || |||| ||||||||||| |||| |||
seq2  CTCT-GGTAC--ACCCACC--TGCCAATC-AGTCACTGCAG-ACTA-GCA  85

seq1  CATCTCCTACTGAGGTCAGACAAGGCGCCTCAAGTAGGGAAACAGGATCC  150
      ||||| ||||||| ||||||| ||||| ||| ||||||  |||| ||| |
seq2  CATCT-CTACTGA-GTCAGAC-AGGCG-CTC-AGTAGG--AACA-GAT-C  126

seq1  ACAGGGAGACAACAGTTTCAGGGACAACCCTCCTTCCAGTTGTTGGGGGA  200
      ||| |||||| |||| ||||||||||  ||||  ||||| |||| |||||
seq2  ACA-GGAGAC-ACAG-TTCAGGGACA--CCTC--TCCAG-TGTT-GGGGA  167

seq1  CCAGCATGAAGACCAAATGATACATCTGGTACATGCGTGCAGGGGGCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATGAAGACCAAATGATACATCTGGTACATGCGTGCAGGGGGCCTA  217

seq1  GGTTTAGATCAGGTAAGCTCTTTGGTCTCCTTTGGGAGCCACCAGGGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGATCAGGTAAGCTCTTTGGTCTCCTTTGGGAGCCACCAGGGTCC  267

seq1  AGGTTACTTGACACTGTTGGTCTTCTTAGAAGTACACACATTTTAAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTACTTGACACTGTTGGTCTTCTTAGAAGTACACACATTTTAAATAG  317

seq1  AAGAAAGCATATTTTCTTTGAAATCCTTCTCATCAAATTGTATTGATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGCATATTTTCTTTGAAATCCTTCTCATCAAATTGTATTGATTAT  367

seq1  ATTTAAATAACTACTTGTTTCTAAGTAATAGTGTCTCATTAAATACTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATAACTACTTGTTTCTAAGTAATAGTGTCTCATTAAATACTGTA  417

seq1  CTAACCAAAGTTTCGGAACTGCTGTTTCAAGAATAGATATTCACAGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCAAAGTTTCGGAACTGCTGTTTCAAGAATAGATATTCACAGCCTG  467

seq1  CAGTGTCTTCACACTTCTTCCTAATGCCTTACATTTTCTTGGTTTATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCTTCACACTTCTTCCTAATGCCTTACATTTTCTTGGTTTATATT  517

seq1  ACCATTTGACTTTTCAGTATTTACAGCATCTCTCCCGCTGTTTTTGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTGACTTTTCAGTATTTACAGCATCTCTCCCGCTGTTTTTGAAAA  567

seq1  TGTAATATTTAAAAATGTGCAGTGTTTATCTACACTTGGCCATTTCATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATATTTAAAAATGTGCAGTGTTTATCTACACTTGGCCATTTCATTG  617

seq1  TTTTCTGCTTATGTGATTCTCTTGTAGTTAAAGATACATTTCCTCTGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCTTATGTGATTCTCTTGTAGTTAAAGATACATTTCCTCTGTTC  667

seq1  TTACTGTGGATAGAGTGAGGAAAGAAAACAAGCCAGGCCCATTAGTCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTGGATAGAGTGAGGAAAGAAAACAAGCCAGGCCCATTAGTCAAT  717

seq1  GACATCCAGCACATATATCAGGCTCATCTGCACAGTAATCAATGCTAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCCAGCACATATATCAGGCTCATCTGCACAGTAATCAATGCTAACT  767

seq1  AATGCCTAATTGTTTTTTAGTTTTAATTGATCACTGAATTCTAAACTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTAATTGTTTTTTAGTTTTAATTGATCACTGAATTCTAAACTTTA  817

seq1  AAACTGTAGAACTCTGTCAAGAATAAGAAAAAGGAGAAAGAAGATAATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTAGAACTCTGTCAAGAATAAGAAAAAGGAGAAAGAAGATAATAA  867

seq1  GGAAAAAGGAAGGACGGCAGGGAGTGAAGACGAGGAATGTAGGGAAAGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAGGAAGGACGGCAGGGAGTGAAGACGAGGAATGTAGGGAAAGGG  917

seq1  GCCATTCCCTGCACAGGGAAAGCAGAAATGAGAGAAGCAGGAGAATATGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCCCTGCACAGGGAAAGCAGAAATGAGAGAAGCAGGAGAATATGA  967

seq1  AGACATAGAATGAGGTAGAGGGAGAATAAAAACAAGCGAGGAAGAAGTAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAGAATGAGGTAGAGGGAGAATAAAAACAAGCGAGGAAGAAGTAA  1017

seq1  GAAAAATCAGGGAATTGAGGAACTGAAAAATGAGGAATTC  1090
      ||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATCAGGGAATTGAGGAACTGAAAAATGAGGAATTC  1057