BAC Information

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BAC

Clone NameB6Ng01-095I11
Chromosome5 (Build37)
Map Location 57,137,711 - 57,262,752
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095I11.bB6Ng01-095I11.g
ACCDH906449DH906450
length1,0811,135
definitionDH906449|Mus musculus domesticus DNA, BAC clone: B6Ng01-095I11, 5' end.DH906450|Mus musculus domesticus DNA, BAC clone: B6Ng01-095I11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,261,654 - 57,262,752)(57,137,711 - 57,138,646)
sequence
gaattcagtaaaaatactgtataaataatgttggcttaacaagaataatt
ttgtagtggaagaataatgatctatcttcaaatgtacatgatcttaaggc
aaatgttcttgtgataaggtaaaaagataaattaccaattaaatattaga
gggagattattattgcatttcaaatgagtgcttcctctcataaattcatt
tctaacttggcaagtcacttaacagaccataatgtgcttcattatgtgga
aatgctatttaattatagtgattcagaatctctgaaaggaagattttcct
tagagaaaaaccatgtgtaatgagctatctgaacaatcactttctgtata
ccagaatgcagatttcaaatgatctgcaggattaacagaaccgaacaaac
tgaatgacttagtgtatgtgaaaatattggtcagatttcaatactatgga
agcatttgtttgatgcttctcttactgcacatctcacacacacacacaca
cacacacacacacacacacctatcccctatccccctgcataatgtcagtg
cagcaacaatgccctttcaaccttccctacttaatggaagcttatgtttc
agcttttctccccttagtagattgtggttgggaatgttttctcctttccc
ttgggtccagggtatctgacagtgaacttagccttgggattctccatgaa
ttaaaacctcccctgaactctgcttcagttctggttcaatttagccttaa
tcatcttactgccttctaaaatcttactcactaaaaacaggatccctctt
ctatggcatttgcattgctgtttagtctttttttttttttgagtaaaaac
aataagagcagagaaaatacttgtgtttcagtaatattctagagaactgt
tggcctaaacaataaaggaacatagtatcaaatacctacaacacttaggc
atatttccttaaacttcagcataaagtaagagcttctactactttccaaa
ttactttattgacatattcttccactcatttcctaagtacataaaatatt
tttgtgaattgaatcagaaaaactctcaagc
gaattctctcctgtctcccccataccttattctcatctcctttcccactc
ctctcactcacccaggttcctctctcctactgcctcccattattatttta
ttttctcttctaaagggaattgaagcatcctctcttaagccttccttctt
gcttaccttcttagagtctatgtggtatcatagatattctgtacgtttag
actaatatccacttatccgtgattaaataccatgtatattctttgagatc
tggattcctttactcgggaaattattttttagttccatcattttcctgca
aaattcatgatatcctgtttttagtagctggatataattccattgtgtaa
atgaaccatgttttctttatccattaattacaacctttcctggcagtgtt
agcacatgcctttaatcctagcacttgggaggcagaagcagcagtatttc
tgagttcgaggtcagcctggtctttagagtgagttccaggacagccaggg
ctatacaaagaaatctgatcttgaacccctaccctcaccccccgaaaaag
aaattacaacctattctgtatatctgtattgcttccagtttctggataat
ataaataaggcttctatgaagatagtggaatgtttgtctttgtgatatag
tggagcatattttgggtatatgcccaagagcagtacaggtaagtcttcag
gtagaactatttccaattttttttctttttttcttttctttttttaaagt
ttatatgtgattataattaaaaacaaaagcataaagcaaacgaattattt
atactctccaatcaagtccaaatgtacttttgccttaattattaggatat
ttcagtgaaaatgattgaatttaaactcgaatttaatttctaggtagttg
tttccattctagtgcatccacttctgtgtaggcagacggcctactcctta
tgtacttttaagaaagatgtcagatatttgatttcattttttcatatatt
tttttttctatgccactgctgccaaataagaagtgatgctccaagttatc
tatggatgaacacaggatcccattgagaggtagaaagtaccaaggagctt
agtctgcgcacctataagtgacaccatatgaacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_57261654_57262752
seq2: B6Ng01-095I11.b_43_1123 (reverse)

seq1  GCTTGAAGAGTGTTTCTGATTCAAATTCAACAAAAAATATTTTATGTAAC  50
      ||||| ||||| |||||||||| ||||||   ||||||||||||||||  
seq2  GCTTG-AGAGTTTTTCTGATTC-AATTCA--CAAAAATATTTTATGTA--  44

seq1  CTTAGGAAAATGAGTGGAAGAATATGGTCAAATTAAAGTAAATTTGGAAA  100
      |||||| |||||||||||||||||| |||||  |||||| ||||||||||
seq2  CTTAGG-AAATGAGTGGAAGAATAT-GTCAA--TAAAGT-AATTTGGAAA  89

seq1  GTAGTAGAAGCTCTTTACTTTAATGCTGAAAGTTTTAAGGAAATATGCCT  150
      ||||||||||||| ||||||| ||||||||   |||||||||||||||||
seq2  GTAGTAGAAGCTC-TTACTTT-ATGCTGAA--GTTTAAGGAAATATGCCT  135

seq1  AAGTGTTGTAGGTATTTGATACTATTGTTTCCCTTATTGGTTTAGGCCAA  200
      |||||||||||||||||||||||||   |||| ||||| |||||||||||
seq2  AAGTGTTGTAGGTATTTGATACTAT--GTTCCTTTATT-GTTTAGGCCAA  182

seq1  CAGTTCTCTAGAATATTACTGAAACACAAGTATTTTCTCTGCTCTTATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTCTAGAATATTACTGAAACACAAGTATTTTCTCTGCTCTTATTG  232

seq1  TTTTTACTCAAAAAAAAAAAAAGACTAAACAGCAATGCAAATGCCATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTCAAAAAAAAAAAAAGACTAAACAGCAATGCAAATGCCATAGA  282

seq1  AGAGGGATCCTGTTTTTAGTGAGTAAGATTTTAGAAGGCAGTAAGATGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGATCCTGTTTTTAGTGAGTAAGATTTTAGAAGGCAGTAAGATGAT  332

seq1  TAAGGCTAAATTGAACCAGAACTGAAGCAGAGTTCAGGGGAGGTTTTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCTAAATTGAACCAGAACTGAAGCAGAGTTCAGGGGAGGTTTTAAT  382

seq1  TCATGGAGAATCCCAAGGCTAAGTTCACTGTCAGATACCCTGGACCCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAGAATCCCAAGGCTAAGTTCACTGTCAGATACCCTGGACCCAAG  432

seq1  GGAAAGGAGAAAACATTCCCAACCACAATCTACTAAGGGGAGAAAAGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGAGAAAACATTCCCAACCACAATCTACTAAGGGGAGAAAAGCTG  482

seq1  AAACATAAGCTTCCATTAAGTAGGGAAGGTTGAAAGGGCATTGTTGCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAAGCTTCCATTAAGTAGGGAAGGTTGAAAGGGCATTGTTGCTGC  532

seq1  ACTGACATTATGCAGGGGGATAGGGGATAGGTGTGTGTGTGTGTGTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACATTATGCAGGGGGATAGGGGATAGGTGTGTGTGTGTGTGTGTGT  582

seq1  GTGTGTGTGTGTGTGAGATGTGCAGTAAGAGAAGCATCAAACAAATGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGAGATGTGCAGTAAGAGAAGCATCAAACAAATGCTT  632

seq1  CCATAGTATTGAAATCTGACCAATATTTTCACATACACTAAGTCATTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGTATTGAAATCTGACCAATATTTTCACATACACTAAGTCATTCAG  682

seq1  TTTGTTCGGTTCTGTTAATCCTGCAGATCATTTGAAATCTGCATTCTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCGGTTCTGTTAATCCTGCAGATCATTTGAAATCTGCATTCTGGT  732

seq1  ATACAGAAAGTGATTGTTCAGATAGCTCATTACACATGGTTTTTCTCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAAAGTGATTGTTCAGATAGCTCATTACACATGGTTTTTCTCTAA  782

seq1  GGAAAATCTTCCTTTCAGAGATTCTGAATCACTATAATTAAATAGCATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATCTTCCTTTCAGAGATTCTGAATCACTATAATTAAATAGCATTT  832

seq1  CCACATAATGAAGCACATTATGGTCTGTTAAGTGACTTGCCAAGTTAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATAATGAAGCACATTATGGTCTGTTAAGTGACTTGCCAAGTTAGAA  882

seq1  ATGAATTTATGAGAGGAAGCACTCATTTGAAATGCAATAATAATCTCCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTTATGAGAGGAAGCACTCATTTGAAATGCAATAATAATCTCCCT  932

seq1  CTAATATTTAATTGGTAATTTATCTTTTTACCTTATCACAAGAACATTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATTTAATTGGTAATTTATCTTTTTACCTTATCACAAGAACATTTG  982

seq1  CCTTAAGATCATGTACATTTGAAGATAGATCATTATTCTTCCACTACAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGATCATGTACATTTGAAGATAGATCATTATTCTTCCACTACAAA  1032

seq1  ATTATTCTTGTTAAGCCAACATTATTTATACAGTATTTTTACTGAATTC  1099
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTTGTTAAGCCAACATTATTTATACAGTATTTTTACTGAATTC  1081

seq1: chr5_57137711_57138646
seq2: B6Ng01-095I11.g_293_1201

seq1  ATACCATGTATATTCTTTGAGATCTGGATTCCTTTACTCGGGAAATTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATGTATATTCTTTGAGATCTGGATTCCTTTACTCGGGAAATTATT  50

seq1  TTTTAGTTCCATCATTTTCCTGCAAAATTCATGATATCCTGTTTTTAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTCCATCATTTTCCTGCAAAATTCATGATATCCTGTTTTTAGTA  100

seq1  GCTGGATATAATTCCATTGTGTAAATGAACCATGTTTTCTTTATCCATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATATAATTCCATTGTGTAAATGAACCATGTTTTCTTTATCCATTA  150

seq1  ATTACAACCTTTCCTGGCAGTGTTAGCACATGCCTTTAATCCTAGCACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAACCTTTCCTGGCAGTGTTAGCACATGCCTTTAATCCTAGCACTT  200

seq1  GGGAGGCAGAAGCAGCAGTATTTCTGAGTTCGAGGTCAGCCTGGTCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGAAGCAGCAGTATTTCTGAGTTCGAGGTCAGCCTGGTCTTTA  250

seq1  GAGTGAGTTCCAGGACAGCCAGGGCTATACAAAGAAATCTGATCTTGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGTTCCAGGACAGCCAGGGCTATACAAAGAAATCTGATCTTGAAC  300

seq1  CCCTACCCTCACCCCCCGAAAAAGAAATTACAACCTATTCTGTATATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACCCTCACCCCCCGAAAAAGAAATTACAACCTATTCTGTATATCTG  350

seq1  TATTGCTTCCAGTTTCTGGATAATATAAATAAGGCTTCTATGAAGATAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTTCCAGTTTCTGGATAATATAAATAAGGCTTCTATGAAGATAGT  400

seq1  GGAATGTTTGTCTTTGTGATATAGTGGAGCATATTTTGGGTATATGCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTTTGTCTTTGTGATATAGTGGAGCATATTTTGGGTATATGCCCA  450

seq1  AGAGCAGTACAGGTAAGTCTTCAGGTAGAACTATTTCCAATTTTTTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGTACAGGTAAGTCTTCAGGTAGAACTATTTCCAATTTTTTTTCT  500

seq1  TTTTTTCTTTTCTTTTTTTAAAGTTTATATGTGATTATAATTAAAAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTTCTTTTTTTAAAGTTTATATGTGATTATAATTAAAAACAA  550

seq1  AAGCATAAAGCAAACGAATTATTTATACTCTCCAATCAAGTCCAAATGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATAAAGCAAACGAATTATTTATACTCTCCAATCAAGTCCAAATGTA  600

seq1  CTTTTGCCTTAATTATTAGGATATTTCAGGTGAAAATGATTGAATTTAAA  650
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTTTTGCCTTAATTATTAGGATATTTCA-GTGAAAATGATTGAATTTAAA  649

seq1  CTCGAATTTAATTTCTAGGTAGTTGTTTCCATTCTAGTGCATCCACTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAATTTAATTTCTAGGTAGTTGTTTCCATTCTAGTGCATCCACTTCT  699

seq1  GTGTAGGCAGACGGCCTACTCCTTAAGGTACTTTTAAAGAAAAGATGTTC  750
      |||||||||||||||||||||||| | ||||||||||   ||||||| ||
seq2  GTGTAGGCAGACGGCCTACTCCTT-ATGTACTTTTAA--GAAAGATG-TC  745

seq1  AGATATTTGATTTCATTTTTTTTCATTATTATTTTTTTTTCTATGCCACT  800
      |||||||||||||||  |||||||||   |||||||||||||||||||||
seq2  AGATATTTGATTTCA--TTTTTTCAT--ATATTTTTTTTTCTATGCCACT  791

seq1  GCCTGGCAAATACAGAAGTGGATGCTCACAGTTATCTATAGGATGGAACA  850
      | ||| |||||| |||||| |||||||  |||||||||| |||| |||||
seq2  G-CTGCCAAATA-AGAAGT-GATGCTCCAAGTTATCTAT-GGAT-GAACA  836

seq1  CAGGATCCCCAATGGAGGAGGTAGAGAAAGTACCCAAGGAGCTTAAGGGG  900
      |||||||||  || || |||||  |||||||| ||||||||||||    |
seq2  CAGGATCCC--ATTGA-GAGGT--AGAAAGTA-CCAAGGAGCTTA----G  876

seq1  TCTGCGACCCTATAGGTGGAACAACAATATGAACTA  936
      ||||||  |||||| |||  || || ||||||||||
seq2  TCTGCGCACCTATAAGTG--AC-ACCATATGAACTA  909