BAC Information

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BAC

Clone NameB6Ng01-095J23
Chromosome5 (Build37)
Map Location 105,021,603 - 105,197,265
singlet/doubletdoublet
Overlap geneLOC100041199
Upstream genePtpn13, Slc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963
Downstream geneLOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650, Lrrc8b, Lrrc8c, Lrrc8d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095J23.bB6Ng01-095J23.g
ACCDH906513DH906514
length454524
definitionDH906513|Mus musculus domesticus DNA, BAC clone: B6Ng01-095J23, 5' end.DH906514|Mus musculus domesticus DNA, BAC clone: B6Ng01-095J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,196,806 - 105,197,265)(105,021,603 - 105,022,134)
sequence
ctgtctgctcctatacaaagtctgaagtgactatagcttgtgtcaagttg
acaataaggtacccagcataaatcccacacaattataacctatattgcat
cacccatacatagcgccaggtacacatttgaattcctgtaaagtgtagga
tggttagagtttattctctggatactctccatggcctctctaaaacagac
catttaccagaggggtctcattgtcctgcatcttgactgatctaggaaga
aaaaacactacatgtcctctctgaacattatgtcctctttgctgtagatt
tcaaggtttgtttgaaatacgatagcaagccgggcacacgcctttaatcc
taccactcgggaggcagaggcaggtggatttctgagttcgaggacagcct
gttctacaaagtgagttccaggacagcaagggctatactgagaaaccctg
tctc
gaattcaatgtggtctctgactgatggcaaaggtcataaagtacattgga
cagttcccctagggatggttaaccgtgtaggaaagagtgtgggataattg
ttctgcagaagttggctaaggtctgcttctacagctaaaggttggtaagg
tctgtcttcaaatagcagaggtcatgaggtctttaaaaaatacatctgag
cattttgaaatgaacgaaggttttttttctatctccttcattgagtactg
tcctatgtgtatctactattcctagatttcctagtgaagtgtgggtgcaa
agaaatttacccccaatgtcctgttggtcattaaagagtgaaattctcca
gcaattggaagaattggccttagggaatgatgacctccgcatttgactat
gcattggaacatggccagtcctgaagtcatcatacaggcaaaacaaaatg
tagtcaaaaattttttcatatatttgtgatacttatccacatttttctat
tattatttattttattagatattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_105196806_105197265
seq2: B6Ng01-095J23.b_50_509 (reverse)

seq1  GAGACAGGGTTTCTCTGTATAGCCCTTGCTGTCCTGGAACTCACTTTGTA  50
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAGACAGGGTTTCTCAGTATAGCCCTTGCTGTCCTGGAACTCACTTTGTA  50

seq1  GACCAGGCTGTCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGT  100
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGCTGTCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGT  100

seq1  GGTAGGATTAAAGGCGTGTGCCCGGCTTGCTATCGTATTTCAAACAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGATTAAAGGCGTGTGCCCGGCTTGCTATCGTATTTCAAACAAACC  150

seq1  TTGAAATCTACAGCAAAGAGGACATAATGTTCAGAGAGGACATGTAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATCTACAGCAAAGAGGACATAATGTTCAGAGAGGACATGTAGTGT  200

seq1  TTTTTCTTCCTAGATCAGTCAAGATGCAGGACAATGAGACCCCTCTGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTCCTAGATCAGTCAAGATGCAGGACAATGAGACCCCTCTGGTA  250

seq1  AATGGTCTGTTTTAGAGAGGCCATGGAGAGTATCCAGAGAATAAACTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTCTGTTTTAGAGAGGCCATGGAGAGTATCCAGAGAATAAACTCTA  300

seq1  ACCATCCTACACTTTACAGGAATTCAAATGTGTACCTGGCGCTATGTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCTACACTTTACAGGAATTCAAATGTGTACCTGGCGCTATGTATG  350

seq1  GGTGATGCAATATAGGTTATAATTGTGTGGGATTTATGCTGGGTACCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGCAATATAGGTTATAATTGTGTGGGATTTATGCTGGGTACCTTA  400

seq1  TTGTCAACTTGACACAAGCTATAGTCACTTCAGACTTTGTATAGGAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAACTTGACACAAGCTATAGTCACTTCAGACTTTGTATAGGAGCAG  450

seq1  ACAGGAATTC  460
      ||||||||||
seq2  ACAGGAATTC  460

seq1: chr5_105021603_105022134
seq2: B6Ng01-095J23.g_70_593

seq1  GAATTCAATGTGGTCTCTGACTGATGGCAAAGGTCATAAAGTACATTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTGGTCTCTGACTGATGGCAAAGGTCATAAAGTACATTGGA  50

seq1  CAGTTCCCCTAGGGATGGTTAACCGTGTAGGAAAGAGTGTGGGATAATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCCCTAGGGATGGTTAACCGTGTAGGAAAGAGTGTGGGATAATTG  100

seq1  TTCTGCAGAAGTTGGCTAAGGTCTGCTTCTACAGCTAAAGGTTGGTAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAGAAGTTGGCTAAGGTCTGCTTCTACAGCTAAAGGTTGGTAAGG  150

seq1  TCTGTCTTCAAATAGCAGAGGTCATGAGGTCTTTAAAAAATACATCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTCAAATAGCAGAGGTCATGAGGTCTTTAAAAAATACATCTGAG  200

seq1  CATTTTGAAATGAACGAAGGTTTTTTTTCTATCTCCTTCATTGAGTACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGAAATGAACGAAGGTTTTTTTTCTATCTCCTTCATTGAGTACTG  250

seq1  TCCTATGTGTATCTACTATTCCTAGATTTCCTAGTGAAGTGTGGGTGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGTGTATCTACTATTCCTAGATTTCCTAGTGAAGTGTGGGTGCAA  300

seq1  AGAAATTTACCCCCAATGTCCTGTTGGTCATTAAAGAGTGAAATTCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTACCCCCAATGTCCTGTTGGTCATTAAAGAGTGAAATTCTCCA  350

seq1  GCAATTGGAAGAATTGGCCTTAGGGAATGATGACCTCCGCATTTGACTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTGGAAGAATTGGCCTTAGGGAATGATGACCTCCGCATTTGACTAT  400

seq1  GCATTGGAACATGGCCAGTCCTGAAGTCATCATACAGGCAAAACAAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGAACATGGCCAGTCCTGAAGTCATCATACAGGCAAAACAAAATG  450

seq1  TAGTCAGAAAATTTTATTCATATATTTGTGCATACTTAATCACACATTTT  500
      |||||| |||||||| |||||||||||||| |||||| ||| ||||||||
seq2  TAGTCA-AAAATTTT-TTCATATATTTGTG-ATACTT-ATC-CACATTTT  495

seq1  TCCTATTTATTTATTTATTTTATTAGATATTT  532
      | |||||   ||||||||||||||||||||||
seq2  T-CTATT--ATTATTTATTTTATTAGATATTT  524