BAC Information

Click to search

BAC

Clone NameB6Ng01-096M18
Chromosome5 (Build37)
Map Location 95,583,057 - 95,584,217
singlet/doubletsinglet
Overlap geneLOC100041296
Upstream geneLOC100041032, LOC100041042, LOC624421, AA792892, LOC665521, LOC665551, LOC100041102, LOC665560, LOC100041115, LOC624507, LOC621203, LOC100041153, LOC665499, LOC624698, LOC100041179, LOC624655, LOC100041166, LOC665469, LOC622894, EG666121, LOC666125, EG666133
Downstream geneLOC100041253, LOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231, Cnot6l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096M18.bB6Ng01-096M18.g
ACCDH907343DH907344
length1,1441,179
definitionDH907343|Mus musculus domesticus DNA, BAC clone: B6Ng01-096M18, 5' end.DH907344|Mus musculus domesticus DNA, BAC clone: B6Ng01-096M18, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatggcagggaggaaaggaggtaacatttgaaatgtaaataaag
aaaatgtcaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa
gaaagagcaaacgaacatggttcccttctttagatgacattattgttgtt
taagtagaataaagtatctaaattgaaggattctgcaacaaatgccctct
gggatgagttaaaatgaacacatggatgccagacgtgtcaggattcaaaa
tcttgagtaggtggataaagttatcagctaaggtagttcacatatggata
tctaggttggccttttgccacatcacctccagtaaagatctgtgtgacaa
tttccacagactaaggcatttgacttcaaaagggggaggcctcctggaac
cagttgtgaaattcctcacaggagaaaaattaatgagccatagttctcgt
atcagttttatgttttctatttcttttcctatatacaagatgttcctaat
agcccaggccaagatcttaagtattttttttaagatttttttttatttat
tattatagtaagtacactgtagctatcttcagacacaccagaagagggag
tcagatcttgttacagatggttgtgagccaccatgtggttgctgggattt
gaactctggaactttggaagagcagtcaggtgctcttacccactgagcca
tctcaccagcccaagatcttaagtattatggttacaaaaccatctcttga
aatggaatcactaaacatgacctcatctcttggaaaaccaggacttcact
ttataaatcacgtataagatagtagtgataaatataaactttcccaacaa
taatattatatgtgtctgcatgtgtgtcatcagaagtaggttttggaatc
ttgtttaagaaagtcttaaatagaattaaaacagtttatgttttgaagaa
tacagagacaggaactagaggttaatagtacctgatcataaaactcatta
gcttgttcttgggaatttgccagtatccctaatgattttgttatttgatg
tataaatgattattgtacatgattatgatatgttatggatttatttgttc
attgctgcttcactgatacagctttccgagccttaaccagtttc
gaattctttgtttagctctgtaccccatttttaatggggttattagattt
tctggagtctacgtttttgagttttttatatacattggatgtcagtcccc
tattttatttatgaaactgagactgtcatacccaggtatccataccataa
tcagattccaaatgctgaaaccattgcatacaccagcaagattttgctaa
aaggaccttgatatagctgtatcttgtgaggctatgatggggcctagcaa
acacagaagtagatcttcacagtcagctattggatggatcacaaggccct
caatggaggagctagatattgtacccaaggagctaatgaagaataaaaaa
ttactgaactcttcctcaccccagagcccgacccctcccatctagagagt
gttcccagaacactcctgaactcttcaccccagaatgcattcctgaactc
ctcaccctagagttcgaaccctcccaactaaagactgttccaagaacatt
tttgagataagggcctcctggaacaacctcagaatgaaccgggtacattg
ccaaataataggacatgaccccttagttacgtagaattcccttggcagaa
ccccttgtcccttggcagaaccccttagttatgcaaacttgtactttccc
tgccccgctctccccccttgagtttttcctatataagcctgtgaaaaatt
tggctcgaggtcgattctcctctacaccatactaggtgcatgagtttcga
ccccagagctctggtctatgtgctttcttgctgttactttattaaatctt
acccacttacattttgagtatggtctcagtgtcttcttgggtccgcggct
gtcccgaggcttgagtgagggtctcccttcggggatctttcattttgggg
gctcgtccgggatcagcgcgaccacccagaggtcctagacccacttaagg
taagattctttgttctgtcttggtctggtgtctgtgttctgtttctaagt
tagtgcgatcgcagtttcagtttggggacgctcagtgagacgcgctccga
gagggacgcggggtgataagatagaacgttgtcaagttgttcaccgtcgt
tcgccttgggaacgttccagtgagtacggttagaacaggacccatgggtg
aacctttgaggcccagagaacaccctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_95583057_95584217
seq2: B6Ng01-096M18.b_50_1193 (reverse)

seq1  GAAACTGGTGTTACAGCTCTGAAAAGCTGTATTCAGTGAAGCAGCAAAAT  50
      |||||||  ||||  |||| | ||||||||| |||||||||||||||   
seq2  GAAACTG--GTTAAGGCTC-GGAAAGCTGTA-TCAGTGAAGCAGCAA---  43

seq1  AGAACAGACATAATCATTTACAATAATCATAATCATGTACAATAATCATT  100
       ||||| | | ||||  | |||   ||||||||||||||||||||||| |
seq2  TGAACAAATA-AATCCATAACA--TATCATAATCATGTACAATAATCA-T  89

seq1  TTATACATCAAAATACAAAATCATCTAGGGATACTGGCAAATTCCCAAGA  150
      ||||||||||||  |||||||||| |||||||||||||||||||||||||
seq2  TTATACATCAAATAACAAAATCAT-TAGGGATACTGGCAAATTCCCAAGA  138

seq1  ACAAGCTAATGAGTTTTTATGATCAGGTACTATTTAACCTCTAGTTCCTG  200
      ||||||||||||| |||||||||||||||||| |||||||||||||||||
seq2  ACAAGCTAATGAG-TTTTATGATCAGGTACTA-TTAACCTCTAGTTCCTG  186

seq1  TTCTTCTGTAATTCTTCAAAACATAAACTGTTTTAATTCTATTTAAGACT  250
      |   ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  T--CTCTGT-ATTCTTCAAAACATAAACTGTTTTAATTCTATTTAAGACT  233

seq1  TTCTTAAACAAGATTCCAAAACCTACTTCTGATGACACACATGCAGACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAACAAGATTCCAAAACCTACTTCTGATGACACACATGCAGACAC  283

seq1  ATATAATATTATTGTTGGGAAAGTTTATATTTATCACTACTATCTTATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATATTATTGTTGGGAAAGTTTATATTTATCACTACTATCTTATAC  333

seq1  GTGATTTATAAAGTGAAGTCCTGGTTTTCCAAGAGATGAGGTCATGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTATAAAGTGAAGTCCTGGTTTTCCAAGAGATGAGGTCATGTTTA  383

seq1  GTGATTCCATTTCAAGAGATGGTTTTGTAACCATAATACTTAAGATCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCCATTTCAAGAGATGGTTTTGTAACCATAATACTTAAGATCTTG  433

seq1  GGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCTCTTCCAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCTCTTCCAAAG  483

seq1  TTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTA  533

seq1  ACAAGATCTGACTCCCTCTTCTGGTGTGTCTGAAGATAGCTACAGTGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATCTGACTCCCTCTTCTGGTGTGTCTGAAGATAGCTACAGTGTAC  583

seq1  TTACTATAATAATAAATAAAAAAAAATCTTAAAAAAAATACTTAAGATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATAATAATAAATAAAAAAAAATCTTAAAAAAAATACTTAAGATCT  633

seq1  TGGCCTGGGCTATTAGGAACATCTTGTATATAGGAAAAGAAATAGAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGGGCTATTAGGAACATCTTGTATATAGGAAAAGAAATAGAAAAC  683

seq1  ATAAAACTGATACGAGAACTATGGCTCATTAATTTTTCTCCTGTGAGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTGATACGAGAACTATGGCTCATTAATTTTTCTCCTGTGAGGAA  733

seq1  TTTCACAACTGGTTCCAGGAGGCCTCCCCCTTTTGAAGTCAAATGCCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAACTGGTTCCAGGAGGCCTCCCCCTTTTGAAGTCAAATGCCTTA  783

seq1  GTCTGTGGAAATTGTCACACAGATCTTTACTGGAGGTGATGTGGCAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGGAAATTGTCACACAGATCTTTACTGGAGGTGATGTGGCAAAAG  833

seq1  GCCAACCTAGATATCCATATGTGAACTACCTTAGCTGATAACTTTATCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACCTAGATATCCATATGTGAACTACCTTAGCTGATAACTTTATCCA  883

seq1  CCTACTCAAGATTTTGAATCCTGACACGTCTGGCATCCATGTGTTCATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTCAAGATTTTGAATCCTGACACGTCTGGCATCCATGTGTTCATTT  933

seq1  TAACTCATCCCAGAGGGCATTTGTTGCAGAATCCTTCAATTTAGATACTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCATCCCAGAGGGCATTTGTTGCAGAATCCTTCAATTTAGATACTT  983

seq1  TATTCTACTTAAACAACAATAATGTCATCTAAAGAAGGGAACCATGTTCG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTACTTAAACAACAATAATGTCATCTAAAGAAGGGAACCATGTTCG  1033

seq1  TTTGCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  1083

seq1  CTTGACATTTTCTTTATTTACATTTCAAATGTTACCTCCTTTCCTCCCTG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACATTTTCTTTATTTACATTTCAAATGTTACCTCCTTTCCTCCCTG  1133

seq1  CCATTGAATTC  1161
      |||||||||||
seq2  CCATTGAATTC  1144