BAC Information

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BAC

Clone NameB6Ng01-096P21
Chromosome5 (Build37)
Map Location 51,170,129 - 51,330,001
singlet/doubletdoublet
Overlap geneEG624734
Upstream geneLOC666223, Gpr125, EG637307, LOC100041015, LOC242987
Downstream geneLOC666265, LOC100041059, Ppargc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096P21.bB6Ng01-096P21.g
ACCDH907484DH907485
length1,2091,162
definitionDH907484|Mus musculus domesticus DNA, BAC clone: B6Ng01-096P21, 5' end.DH907485|Mus musculus domesticus DNA, BAC clone: B6Ng01-096P21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,328,807 - 51,330,001)(51,170,129 - 51,171,304)
sequence
gaattcatggtcttccctcatgtgtgctcacccattcgttcactcagcta
tgatatttaggcacaacccctatgattgggcctactattgggacaatatc
tcttaaagtgaaaaagaggacacagaatggtccagcatccatggagtttc
ccttgtagaaaaatttcacaaaccatgcatgagcaagagaatgagaatgc
cggtctaggtaattgtgatcaccataaaacatctgtggggctatagtttt
ctttctagaggaatggtacttggtaagtctgaagattacagatggtattc
tgtttgtttttatcattttaattttaagccaacccaaacaggaatgaacc
atgcaaaaaacaaaaggactctgagaaagggagatataaaataccttgca
aagtctaaatggaggcactcagaatatgtccaatgactgtcttctctgaa
agagagatacagcttaacacagggaatctgaccatactggagcataaaat
aaaggtcatgtttagaacgataaaactgtttccatttaaactccagacac
agaaacaataaaagaagggggaaaataaactcagagggtgtcacctaaga
cctttcttagctcagtcatctatattcagtacctatttcattaataatgt
aagtgagttttttatctaaaacctattcatttgttctttctcttattgtg
gtgcttgaggaaatatgattttaaaaactgctataatggatctagttatt
ttcccctagagagatgattcatttggatttagattttctaaattgactat
tttcatggtcaatctcccaagcttttgtatgaatggagaaagagataaaa
agaaaggaaaattgagagtgaaggaaaggcaagctatgttgggatacaca
atcaaatccagcattccacaagcaacactcaccaacgtccatgtacccag
agaatgaataatataatattcacaggaagactgaagctacttccctggat
actactaatccatttcctggaagggagccaccataaacctggaatgcctt
aagtcatccaccctcttagaatctggatgccttaccttaaatttattcta
aatacatgcctaagattgtcctcccgatgaatactgttatttagtgaagt
cagggtgtaaggcaatgcatgaaatagaacagtttcattgggaagttaaa
ggaatccca
gaattcacttctctttgtttttccttatctaaaataaatagttcccaagc
ccactatttatctcaaagtgaaaaaaccaaaccaaaccaaaaccaaacca
aaaccaaaccaaaaccaaaccaaaaccaaaccaaaaccaaaccaaaacca
aactaaaactaaaccaaacccaaaccaaacaaacaaaacaacaacaacaa
cacccttcatcttgaaactatcaggtaaagttaagagttttcatcttaag
ttcaatgtacaattcaagattttactttcctttaaacttggtaggaattc
cctgtatcctggtttaaaaaaacaaaaacaaaaaacaaaaaataaaagca
gggtgatttcgtttttgtgccacctgattatttccagtatggatggactt
gctctgttttgctgcagtgagggttacctgggcgctccctgtctccccct
gctggctgcctacagctccactgaatatgttttctgagataaaatctctg
tttttctgtgtttaatatggcactaatattgagtggttccttcaaaatgc
cattgtcgctgcagcaactttatgagatatgcactagctgtcaattttaa
ccaacatctctgtcattctggacactgaggaatttgggctaccccttgct
tcttacagaagctaggaggaacttggtgtgtgacagcatgtcagacattt
ctcctactgtgacagcttataagtcatttctcccctttgcagctccccat
gttgcacagtctgaggaatgcctctactcatagcctaaagaagagagacg
cctcccactcattttcccatccatcatcaaaactctggagactttttcta
tgccagaagaattttcccctttaaaataattaggacacgtggcactacag
taatgtacgaaatgctagttaccttgacctatcctctcagacctctctct
acagtgagaaagtacaatatttctcctttcatccataaaaggtactcatg
agtcatcactctttcatctctagtcatctgcagaataaatatgctgaatg
acagaagaaaacaatccccaaataacaaaacagaaacccagccactgaat
aatacttgagttacgtgacttgctgattgagccagttgctgtccctcaga
tatgtctggcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_51328807_51330001
seq2: B6Ng01-096P21.b_47_1255 (reverse)

seq1  TGGGAT--CTTTTACTT-CCAATGAAACTG-TCTATTTCATGCA-TGCTG  45
      ||||||  |||| |||| |||||||||||| ||||||||||||| |||  
seq2  TGGGATTCCTTTAACTTCCCAATGAAACTGTTCTATTTCATGCATTGCCT  50

seq1  TACACACATGGACATCACTAAAATAACAGTA-TCATCTGGGAGACAAAAC  94
      ||||| |   ||| ||||| ||||||||||| ||||| |||||   || |
seq2  TACACCC--TGACTTCACT-AAATAACAGTATTCATC-GGGAGGACAATC  96

seq1  TTTAGCATGTATTTTAGAATAAATT--AAGTAA-GCAT-CAGATTCTAAG  140
      ||  ||||||| |||||||||||||  | |||| |||| |||||||||||
seq2  TTAGGCATGTA-TTTAGAATAAATTTAAGGTAAGGCATCCAGATTCTAAG  145

seq1  A-GGTGGATGAC-TAAAGCATTC--AGTTTATGGTGGCTTCCCTCCAGG-  185
      | |||||||||| ||| ||||||   ||||||||||||| || |||||| 
seq2  AGGGTGGATGACTTAAGGCATTCCAGGTTTATGGTGGCTCCCTTCCAGGA  195

seq1  AATGGA-TAGTAGTATCCAGGG-AGTAGCTTCAGTCTT-CTGTGAATATT  232
      |||||| ||||||||||||||| ||||||||||||||| |||||||||||
seq2  AATGGATTAGTAGTATCCAGGGAAGTAGCTTCAGTCTTCCTGTGAATATT  245

seq1  ATATTATTCATTCTCTGGGTACATGGACGTTGGTGAGTGTTGCTTGTGGA  282
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATTCATTCTCTGGGTACATGGACGTTGGTGAGTGTTGCTTGTGGA  295

seq1  ATGCTGGATTTGATTGTGTATCCCAACATAGCTTGCC-TTCCTTCACTCT  331
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATGCTGGATTTGATTGTGTATCCCAACATAGCTTGCCTTTCCTTCACTCT  345

seq1  CAATTTTCCTTTCTTTTTATCTCTTTCTCCATTCATACAAAAGCTTGGGA  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTCCTTTCTTTTTATCTCTTTCTCCATTCATACAAAAGCTTGGGA  395

seq1  GATTGACCATGAAAATAGTCAATTTAGAAAATCTAAATCCAAATGAATCA  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGACCATGAAAATAGTCAATTTAGAAAATCTAAATCCAAATGAATCA  445

seq1  TCTCTCTAGGGGAAAATAACTAGATCCATTATAGCAGTTTTTAAAATCAT  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTAGGGGAAAATAACTAGATCCATTATAGCAGTTTTTAAAATCAT  495

seq1  ATTTCCTCAAGCACCACAATAAGAGAAAGAACAAATGAATAGGTTTTAGA  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTCAAGCACCACAATAAGAGAAAGAACAAATGAATAGGTTTTAGA  545

seq1  TAAAAAACTCACTTACATTATTAATGAAATAGGTACTGAATATAGATGAC  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAACTCACTTACATTATTAATGAAATAGGTACTGAATATAGATGAC  595

seq1  TGAGCTAAGAAAGGTCTTAGGTGACACCCTCTGAGTTTATTTTCCCCCTT  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTAAGAAAGGTCTTAGGTGACACCCTCTGAGTTTATTTTCCCCCTT  645

seq1  CTTTTATTGTTTCTGTGTCTGGAGTTTAAATGGAAACAGTTTTATCGTTC  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTGTTTCTGTGTCTGGAGTTTAAATGGAAACAGTTTTATCGTTC  695

seq1  TAAACATGACCTTTATTTTATGCTCCAGTATGGTCAGATTCCCTGTGTTA  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATGACCTTTATTTTATGCTCCAGTATGGTCAGATTCCCTGTGTTA  745

seq1  AGCTGTATCTCTCTTTCAGAGAAGACAGTCATTGGACATATTCTGAGTGC  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTATCTCTCTTTCAGAGAAGACAGTCATTGGACATATTCTGAGTGC  795

seq1  CTCCATTTAGACTTTGCAAGGTATTTTATATCTCCCTTTCTCAGAGTCCT  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTTAGACTTTGCAAGGTATTTTATATCTCCCTTTCTCAGAGTCCT  845

seq1  TTTGTTTTTTGCATGGTTCATTCCTGTTTGGGTTGGCTTAAAATTAAAAT  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTGCATGGTTCATTCCTGTTTGGGTTGGCTTAAAATTAAAAT  895

seq1  GATAAAAACAAACAGAATACCATCTGTAATCTTCAGACTTACCAAGTACC  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAACAAACAGAATACCATCTGTAATCTTCAGACTTACCAAGTACC  945

seq1  ATTCCTCTAGAAAGAAAACTATAGCCCCACAGATGTTTTATGGTGATCAC  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCTAGAAAGAAAACTATAGCCCCACAGATGTTTTATGGTGATCAC  995

seq1  AATTACCTAGACCGGCATTCTCATTCTCTTGCTCATGCATGGTTTGTGAA  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCTAGACCGGCATTCTCATTCTCTTGCTCATGCATGGTTTGTGAA  1045

seq1  ATTTTTCTACAAGGGAAACTCCATGGATGCTGGACCATTCTGTGTCCTCT  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTACAAGGGAAACTCCATGGATGCTGGACCATTCTGTGTCCTCT  1095

seq1  TTTTCACTTTAAGAGATATTGTCCCAATAGTAGGCCCAATCATAGGGGTT  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTTTAAGAGATATTGTCCCAATAGTAGGCCCAATCATAGGGGTT  1145

seq1  GTGCCTAAATATCATAGCTGAGTGAACGAATGGGTGAGCACACATGAGGG  1181
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTAAATATCATAGCTGAGTGAACGAATGGGTGAGCACACATGAGGG  1195

seq1  AAGACCATGAATTC  1195
      ||||||||||||||
seq2  AAGACCATGAATTC  1209

seq1: chr5_51170129_51171304
seq2: B6Ng01-096P21.g_68_1229

seq1  GAATTCACTTCTCTTTGTTTTTCCTTATCTAAAATAAATAGTTCCCAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCTCTTTGTTTTTCCTTATCTAAAATAAATAGTTCCCAAGC  50

seq1  CCACTATTTATCTCAAAGTGAAAAAACCAAACCAAACCAAAACCAAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTATTTATCTCAAAGTGAAAAAACCAAACCAAACCAAAACCAAACCA  100

seq1  AAACCAAACCAAAACCAAACCAAAACCAAACCAAAACCAAACCAAAACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAACCAAAACCAAACCAAAACCAAACCAAAACCAAACCAAAACCA  150

seq1  AACTAAAACTAAACCAAACCCAAACCAAACAAACAAAACAACAACAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAACTAAACCAAACCCAAACCAAACAAACAAAACAACAACAACAA  200

seq1  CACCCTTCATCTTGAAACTATCAGGTAAAGTTAAGAGTTTTCATCTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTCATCTTGAAACTATCAGGTAAAGTTAAGAGTTTTCATCTTAAG  250

seq1  TTCAATGTACAATTCAAGATTTTACTTTCCTTTAAACTTGGTAGGAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGTACAATTCAAGATTTTACTTTCCTTTAAACTTGGTAGGAATTC  300

seq1  CCTGTATCCTGGTTTAAAAAAACAAAAACAAAAAACAAAAAATAAAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATCCTGGTTTAAAAAAACAAAAACAAAAAACAAAAAATAAAAGCA  350

seq1  GGGTGATTTCGTTTTTGTGCCACCTGATTATTTCCAGTATGGATGGACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGATTTCGTTTTTGTGCCACCTGATTATTTCCAGTATGGATGGACTT  400

seq1  GCTCTGTTTTGCTGCAGTGAGGGTTACCTGGGCGCTCCCTGTCTCCCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTTTTGCTGCAGTGAGGGTTACCTGGGCGCTCCCTGTCTCCCCCT  450

seq1  GCTGGCTGCCTACAGCTCCACTGAATATGTTTTCTGAGATAAAATCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTGCCTACAGCTCCACTGAATATGTTTTCTGAGATAAAATCTCTG  500

seq1  TTTTTCTGTGTTTAATATGGCACTAATATTGAGTGGTTCCTTCAAAATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGTGTTTAATATGGCACTAATATTGAGTGGTTCCTTCAAAATGC  550

seq1  CATTGTCGCTGCAGCAACTTTATGAGATATGCACTAGCTGTCAATTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCGCTGCAGCAACTTTATGAGATATGCACTAGCTGTCAATTTTAA  600

seq1  CCAACATCTCTGTCATTCTGGACACTGAGGAATTTGGGCTACCCCTTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATCTCTGTCATTCTGGACACTGAGGAATTTGGGCTACCCCTTGCT  650

seq1  TCTTACAGAAGCTAGGAGGAACTTGGTGTGTGACAGCATGTCAGACATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAGAAGCTAGGAGGAACTTGGTGTGTGACAGCATGTCAGACATTT  700

seq1  CTCCTACTGTGACAGCTTATAAGTCATTTCTCCCCTTTGCAGCTCCCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTACTGTGACAGCTTATAAGTCATTTCTCCCCTTTGCAGCTCCCCAT  750

seq1  GTTGCACAGTCTGAGGAATGCCTCTACTCATAGCCTAAAGAAGAGAGACG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCACAGTCTGAGGAATGCCTCTACTCATAGCCTAAAGAAGAGAGACG  800

seq1  CCTCCCACTCATTTTCCCATCCATCATCAAAACTCTGGAGACTTTTTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCACTCATTTTCCCATCCATCATCAAAACTCTGGAGACTTTTTCTA  850

seq1  TGCCAGAAGAATTTTCCCCTTTAAAAATAATTAGGACACGTGGCACTACA  900
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGCCAGAAGAATTTTCCCCTTT-AAAATAATTAGGACACGTGGCACTACA  899

seq1  GTAATGTACGAAATGCTAGTTACCTTGACCTATCCTCTCAGACCTCTCTT  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTAATGTACGAAATGCTAGTTACCTTGACCTATCCTCTCAGACCTCTC-T  948

seq1  CTACAGTGAGAAAGTACAATTATTTCTCCTTTCATCCATAAAAGGTACTC  1000
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTACAGTGAGAAAGTACAA-TATTTCTCCTTTCATCCATAAAAGGTACTC  997

seq1  ATGAGTCATCACTCTTTCATCTCTAGTTCATTCTGGCAGAATAAATATGC  1050
      |||||||||||||||||||||||||| ||| ||| |||||||||||||||
seq2  ATGAGTCATCACTCTTTCATCTCTAG-TCA-TCT-GCAGAATAAATATGC  1044

seq1  TGAATTGACAGAAGAAAACAA-CCCCACATAACAAAACAGAAACCCAGCA  1099
      |||| |||||||||||||||| ||||| ||||||||||||||||||||| 
seq2  TGAA-TGACAGAAGAAAACAATCCCCAAATAACAAAACAGAAACCCAGC-  1092

seq1  AACTGAAATAATACTTGAGTTAAAGTGACCTATGGCTTGAATAGAGCATG  1149
       |||| ||||||||||||||| | |||||   | |||   || ||||  |
seq2  CACTG-AATAATACTTGAGTT-ACGTGAC---TTGCT--GATTGAGCCAG  1135

seq1  TTGCCTTGTCCCTCAG-TATG-CTGGCCT  1176
      ||||  |||||||||| |||| |||||||
seq2  TTGC--TGTCCCTCAGATATGTCTGGCCT  1162