BAC Information

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BAC

Clone NameB6Ng01-097H04
Chromosome5 (Build37)
Map Location 60,468,881 - 60,469,929
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041425, LOC546866
Downstream geneCbfa2t2-ps1, LOC100041498, LOC666597
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097H04.bB6Ng01-097H04.g
ACCDH907823DH907824
length1,2581,117
definitionDH907823|Mus musculus domesticus DNA, BAC clone: B6Ng01-097H04, 5' end.DH907824|Mus musculus domesticus DNA, BAC clone: B6Ng01-097H04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaataaattagactccagagaaccaaataaccctattaataaatg
ggataaagggctaagcaaagacttttcaactgagaaatattaaatagcca
agaagcatctaaagaaatattcaacatccttagtcatcagggaaacacaa
atcaaaacatccctgtgattcaacctcacaccagtcagaatggctaaaat
caaaaactcagatgacagcagatgctggcaaagatgtgaagaaagaggaa
cactcctccattgctggtgggactgcaagctggtacagccaatctggaaa
tcagtttagtgtttcctcagaaaattgtacatagtactacctgaggactc
agcaaaaccactcctggacatatacccagaagatgctccaacttgtaata
tggacacatgctccactattttgatagcagccttatttataacagccaga
agctcaaaagaacccagatgtccttcaacagaggaatggataaagaaaat
gtggtaaattacacaacggagtactactctactattaaaaacaatgaatt
catgaaattgttaggcaaatggttggaactagaaaatatcatcctgagtg
agtttagtacagagtctatatagatcatgtgaaggagaagaaacttttta
cagatttgatattgctactctaaagttggagaacaattgcttttgaaata
ggttaacctcacaagagaacacacacggcatgaactcactgataagtgaa
tattagtccaaaagttccaaatactcaagatacaattagcagacaatatg
aagctcaagaagatggaagaccaaagtgtgagtgcttcagtccttagagg
gaaaacaaagtactcacaggagcaaatatcgaggtaaagtgtaaagcaga
gactgaaggaaaggtaatccagagactgtcccatttggggttccatcaca
tatacagtaaccaaactcagacactattgtgcatgccagaagtgcacgtg
tacaggaacctgatatagctgtctctgaaagctataaaatttgccaaagc
ctacaaatccgagggggatgctggcacaccacccctggactgacacaggt
ctcagtagaggttagagaaagactgaagactgatagttgcaattcaagaa
gaacaacaatcaacatcgaacacctctgaactctggatacatcacaagga
gctactgttccaggctctccctatggtgactgaatgtatgtgctttttgc
tcgtggca
gaattcttattatagttatgtatggctgactacattacttattagtagaa
agtcccccacacaatcacttagaataaaagcggagtcactcccatacaca
ggaatttacaatggtttaggtagtagatcaggctgtggtttaaggaggaa
ctagagtattgcactattcatgggaaggttagctagagcaaactccctaa
ttagaaccatggcttgggcatgaaagcccttgcgcctggagtgtaaagac
ctcacacctggcttctaagaatattgctgaccttagagctgaatttgtct
catttgttttattgcccagttcctgtcagtctttatgtttgcattcctct
gttttgtgtaggagtcattagcatccagtaatctcactgtaccttggcca
atgtgtcacctaattttcctattttcttctgtattaaaagtctggtgctt
gctttgaaaaattacattcagataaacactatctctatgtccatatttgt
ttgtcacttttctcagactccctgcccacatgtaccaggaccctgatttc
tcctgcagattgaggggggctgactgaggccagcccgtggcagttagttc
tttgtatcttgagtaaggaatttgttggttggatgatttcagtttttttg
aaacaggatctcacttaatattccagtataagctcaaatcagtgagcctc
ccaaattttgtcctcagtgctcaaattacatttgtgggtcactggatttc
cttacctccttagtctttctgacctccacagaaagaattcagaagaaaca
agtagagcactagaccacattgtagaagacagagattatttcagagtatg
agggctggcaatcttaagacaaaagaacagactatgcaaacaagaccatt
gctttatctatgttcatgcagatttataatctttctaaaccttatagaca
agaagtctctattttttttctttattggatattttctttcttacatttca
atgttatccctttccaagtctcctctgaatccctatgcccctgctcactg
ctcttggaggagcccctaccacgtacccactccactctcttgcctggcat
ccttaactgggcatcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_60468881_60469929
seq2: B6Ng01-097H04.g_160_1184

seq1  CATACACAGGAATTTACAATGGTTTAGGTAGTAGATCAGGCTGTGGTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACAGGAATTTACAATGGTTTAGGTAGTAGATCAGGCTGTGGTTTA  50

seq1  AGGAGGAACTAGAGTATTGCACTATTCATGGGAAGGTTAGCTAGAGCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAACTAGAGTATTGCACTATTCATGGGAAGGTTAGCTAGAGCAAA  100

seq1  CTCCCTAATTAGAACCATGGCTTGGGCATGAAAGCCCTTGCGCCTGGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTAATTAGAACCATGGCTTGGGCATGAAAGCCCTTGCGCCTGGAGT  150

seq1  GTAAAGACCTCACACCTGGCTTCTAAGAATATTGCTGACCTTAGAGCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGACCTCACACCTGGCTTCTAAGAATATTGCTGACCTTAGAGCTGA  200

seq1  ATTTGTCTCATTTGTTTTATTGCCCAGTTCCTGTCAGTCTTTATGTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCTCATTTGTTTTATTGCCCAGTTCCTGTCAGTCTTTATGTTTGC  250

seq1  ATTCCTCTGTTTTGTGTAGGAGTCATTAGCATCCAGTAATCTCACTGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCTGTTTTGTGTAGGAGTCATTAGCATCCAGTAATCTCACTGTAC  300

seq1  CTTGGCCAATGTGTCACCTAATTTTCCTATTTTCTTCTGTATTAAAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCAATGTGTCACCTAATTTTCCTATTTTCTTCTGTATTAAAAGTC  350

seq1  TGGTGCTTGCTTTGAAAAATTACATTCAGATAAACACTATCTCTATGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTTGCTTTGAAAAATTACATTCAGATAAACACTATCTCTATGTCC  400

seq1  ATATTTGTTTGTCACTTTTCTCAGACTCCCTGCCCACATGTACCAGGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGTTTGTCACTTTTCTCAGACTCCCTGCCCACATGTACCAGGACC  450

seq1  CTGATTTCTCCTGCAGATTGAGGGGGGCTGACTGAGGCCAGCCCGTGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTCTCCTGCAGATTGAGGGGGGCTGACTGAGGCCAGCCCGTGGCA  500

seq1  GTTAGTTCTTTGTATCTTGAGTAAGGAATTTGTTGGTTGGATGATTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTCTTTGTATCTTGAGTAAGGAATTTGTTGGTTGGATGATTTCAG  550

seq1  TTTTTTTGAAACAGGATCTCACTTAATATTCCAGTATAAGCTCAAATCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGAAACAGGATCTCACTTAATATTCCAGTATAAGCTCAAATCAG  600

seq1  TGAGCCTCCCAAATTTTGTCCTCAGTGCTCAAATTACATTTGTGGGTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTCCCAAATTTTGTCCTCAGTGCTCAAATTACATTTGTGGGTCAC  650

seq1  TGGATTTCCTTACCTCCTTAGTCTTTCTGACCTCCACAGAAAGAATTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTCCTTACCTCCTTAGTCTTTCTGACCTCCACAGAAAGAATTCAG  700

seq1  AAGAAACAAGTAGAGCACTAGACCACATTGTAGAAGACAGAGATTATTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACAAGTAGAGCACTAGACCACATTGTAGAAGACAGAGATTATTTC  750

seq1  AGAGTATGAGGGCTGGCAATCTTAAGACAAAAGAACAGACTATGCAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATGAGGGCTGGCAATCTTAAGACAAAAGAACAGACTATGCAAACA  800

seq1  AGACCATTGCTTTATCTATGTTCATGCAGATTTTATAATCTTTCTAAACC  850
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGACCATTGCTTTATCTATGTTCATGCAGA-TTTATAATCTTTCTAAACC  849

seq1  TTATAGAACAAGAAGGTCTTCTATTTTTTTTCTTTTATTGGATATTTTCT  900
      |||||| ||||||| ||| ||||||||||||| |||||||||||||||||
seq2  TTATAG-ACAAGAA-GTC-TCTATTTTTTTTC-TTTATTGGATATTTTCT  895

seq1  TTCTTTACATTTCAAATGTTATCCCCTTTCCAAGTCTCCTCTGAAATCCC  950
      ||| ||||||||| |||||||| ||||||||||||||||||||||   ||
seq2  TTC-TTACATTTC-AATGTTAT-CCCTTTCCAAGTCTCCTCTGAA--TCC  940

seq1  CTATTGCACCCTGCTCAACTGCTTCTATGAGGGTGCACCCCTACCCACGT  1000
      ||| ||| |||||||| ||||| |||  |||   |  |||||| ||||||
seq2  CTA-TGC-CCCTGCTC-ACTGC-TCTTGGAG---GAGCCCCTA-CCACGT  982

seq1  ACCCACTCCCACTTCTCTGCCCTGGCATTCCCTTACACTGGGGCATCTA  1049
      ||||||| |||| |||||  ||||||||  ||||| ||| |||||||||
seq2  ACCCACT-CCAC-TCTCTTGCCTGGCAT--CCTTA-ACT-GGGCATCTA  1025