BAC Information

Click to search

BAC

Clone NameB6Ng01-098J05
Chromosome5 (Build37)
Map Location 68,628,989 - 68,703,340
singlet/doubletdoublet
Overlap genenone
Upstream geneTmem33, Slc30a9, EG666938, C330024D21Rik, D830007B15Rik, Atp8a1, LOC100042458, EG330097, EG666977, AY616753
Downstream geneLOC666996, Kctd8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098J05.bB6Ng01-098J05.g
ACCDH908626DH908627
length1,1981,045
definitionDH908626|Mus musculus domesticus DNA, BAC clone: B6Ng01-098J05, 5' end.DH908627|Mus musculus domesticus DNA, BAC clone: B6Ng01-098J05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,702,130 - 68,703,340)(68,628,989 - 68,630,035)
sequence
gaattctcgaggtcagcaggacacctggtcaatgtaagatttatggtggg
ctatagggaggcgctgcccgggaggggccatcctgccagatggccatttg
gtccatcctgatagccctggctagttcctgcactctcttttttatctttt
atggccggacattcttagctacagggtgggtttggctgtgcctggacccg
cctgggtctattcttcagccctgaatttcttgaacttagataccacaatt
ctataagacccaaaattataagtttttgctcttcacttcttgggtacttt
ctctagctcctccattggtggccctgtgttccatccaatagctgactgtg
agcatccacttctgtgtttgccaggccctggagactgccatacctgggaa
tccatcccataatcagcctccaaacgccgacacttattgcatatgccagc
aagattttgctgaaaggactctgatatacctgtctcttaagagtagtcgt
tttaagtcaaaggaagcaggctctgagaaagaaacagaagagactcttga
aaaggtgcctggtccttgtggacaaggatgatgtcacccaatgcatgttc
atataccaactccaaagaaacgatctactttctggtgattttgtaaatat
cttaaagataaatgctgagggagtgataagataaatggaaaaatatacat
agataatgactatagttttactcaaaattatagtaacctgtcagtcatta
ttttagggattaaaaaacacaaatggataaaacaacatgataataaatcc
aagcttttgccactctttaatatttgtattttatttttaaacgttctttt
ctttaaagagatcttgttgagacttgagaaatgtcacagcattgttttca
aaagttgcagtgtgttgggttgactttaagggacaaataaaatctcagga
gagaggagaaaataattttaactcatgtgtttgccttcacacaaatgaaa
atggaattgcacttggacatagcaagaactgtaacatttattcacagaat
agaaacccatcctaggtctgcagcagaggaaaaattactagaatggagaa
caagtcattgcatacatgaattaaatgggctgtagtattaattaatgaaa
ggaactgcctctgtgctggtctagtagtcattttgggtgtgcactaga
gaattctatataggcatatgtttaaattcataaattcatgtgtgtatatg
catgtgaatatatgctacatacacacacacacacacacacacacacacac
acacacacatatatatatatatatacacatgtacatatatatgcatacat
aaagatacacacaccaaatgtaaaaatatccccacatacattaagaataa
aaataacccaaacaacaaaaataaatgaaccagcaaacaaagttgtgtgt
tgatttaaagaaaaaatttgattgccagatacccattagaacacatgaca
gtgaacaaaggacttagagcacttcttaattttttaggattgagaactgt
cgtctgtttggaacttggaaatcttttttccaaactccggtagagatgtc
ttggacgcaacaatttatgtttcttgtcgacagttttaacatcttcattt
ttctctttcctttaaagagttattttcaggaagagctcagcccttgcttt
agaggaccatggggggatataaagcactctttggactaaaagagagaatg
caattgaagagcagatgttgaggggagggattgcctgttgtcaacgattt
atagaaagtacaatgaacttatgagagccaggggagaaatgacatatctg
ggacaccagaagctgttgctaccagttgtactacaatctgcaaaacacga
ggaaagccagttaggttactttcccataaaaagtgtcttctgtagttcac
catctctgtggactcaagagcagaatgtttcctcgggttttccaagctac
agaacccgaggcagggattcaggtgtctgtattatattaaagaagaaaca
agggaaccaaagtaaggctgtgccgcagcttgggtagaggcagtttaaat
acgaatgtaatgtgtgccagatccagcaagtagccctgtgatggactgca
gagtttatgtagttttgacataaaggcaatcttttatctcctgagtcagt
agatactgtgttaggttttgtgctgtgatttggagaacagaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_68702130_68703340
seq2: B6Ng01-098J05.b_47_1244 (reverse)

seq1  TCTAGTGCAACACCAAAATGACTTACATGAACCATGGCAC-GAGGCAGTT  49
      |||||||||   |||||||||| ||| |  ||||  |||| ||||||| |
seq2  TCTAGTGCACACCCAAAATGAC-TAC-TAGACCA--GCACAGAGGCAG-T  45

seq1  TCATTTCTATTAATTTTAATTACTTACAGCACATTTAAATTTCATGGTAT  99
      || |||| |||||||   | ||| |||||| |||||||  ||||| ||||
seq2  TCCTTTC-ATTAATT---AATAC-TACAGCCCATTTAA--TTCAT-GTAT  87

seq1  GCAATTGACTTGTTCCTCATTCTAGTTATTTCTCCTCTGCTGCAGACCTA  149
      |||| ||||||||||  ||||||||| |||| ||||||||||||||||||
seq2  GCAA-TGACTTGTTCTCCATTCTAGTAATTTTTCCTCTGCTGCAGACCTA  136

seq1  GGATGGGTTTCTATTCTGTGTATAAATGTTACAGTTCTTGCTATGT-CAA  198
      |||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  GGATGGGTTTCTATTCTGTGAATAAATGTTACAGTTCTTGCTATGTCCAA  186

seq1  GTGCAATTCCATTTTCATTTGTGTTGAAGGCAAACACATTGAGTTAAAAT  248
      ||||||||||||||||||||||| |||||||||||||| |||||||||||
seq2  GTGCAATTCCATTTTCATTTGTG-TGAAGGCAAACACA-TGAGTTAAAAT  234

seq1  TATTTTCT-CTCTCTCCTGAGATTTTATTTGTCCCTTAAAGTTCAACCAA  297
      |||||||| |||||||||||||||||||||||||||||||||  | ||||
seq2  TATTTTCTCCTCTCTCCTGAGATTTTATTTGTCCCTTAAAGTCAACCCAA  284

seq1  CACACTGCAACTTTTTGAAACAATGCTGTGACATTTCTCAAGTCTCAACA  347
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  CACACTGCAACTTTTGAAAACAATGCTGTGACATTTCTCAAGTCTCAACA  334

seq1  AGATCTCTTTAAAG-AAAGAACGTTTAAAAATAAAAATACAAATATTAAA  396
      |||||||||||||| ||||||||||||||||| |||||||||||||||||
seq2  AGATCTCTTTAAAGAAAAGAACGTTTAAAAAT-AAAATACAAATATTAAA  383

seq1  GAGTGGCAAAAGCTTGGATTTATTATCATGTTGTTTTATCCATTTGTGTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGCAAAAGCTTGGATTTATTATCATGTTGTTTTATCCATTTGTGTT  433

seq1  TTTTAATCCCTAAAATAATGACTGACAGGTTACTATAATTTTGAGTAAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCCCTAAAATAATGACTGACAGGTTACTATAATTTTGAGTAAAA  483

seq1  CTATAGTCATTATCTATGTATATTTTTCCATTTATCTTATCACTCCCTCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGTCATTATCTATGTATATTTTTCCATTTATCTTATCACTCCCTCA  533

seq1  GCATTTATCTTTAAGATATTTACAAAATCACCAGAAAGTAGATCGTTTCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTATCTTTAAGATATTTACAAAATCACCAGAAAGTAGATCGTTTCT  583

seq1  TTGGAGTTGGTATATGAACATGCATTGGGTGACATCATCCTTGTCCACAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTTGGTATATGAACATGCATTGGGTGACATCATCCTTGTCCACAA  633

seq1  GGACCAGGCACCTTTTCAAGAGTCTCTTCTGTTTCTTTCTCAGAGCCTGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGGCACCTTTTCAAGAGTCTCTTCTGTTTCTTTCTCAGAGCCTGC  683

seq1  TTCCTTTGACTTAAAACGACTACTCTTAAGAGACAGGTATATCAGAGTCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGACTTAAAACGACTACTCTTAAGAGACAGGTATATCAGAGTCC  733

seq1  TTTCAGCAAAATCTTGCTGGCATATGCAATAAGTGTCGGCGTTTGGAGGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCAAAATCTTGCTGGCATATGCAATAAGTGTCGGCGTTTGGAGGC  783

seq1  TGATTATGGGATGGATTCCCAGGTATGGCAGTCTCCAGGGCCTGGCAAAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATGGGATGGATTCCCAGGTATGGCAGTCTCCAGGGCCTGGCAAAC  833

seq1  ACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGAACACAGGGCCACCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGAACACAGGGCCACCA  883

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGAAGTGAAGAGCAAAAACTTATAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGAGCTAGAGAAAGTACCCAAGAAGTGAAGAGCAAAAACTTATAA  933

seq1  TTTTGGGTCTTATAGAATTGTGGTATCTAAGTTCAAGAAATTCAGGGCTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGTCTTATAGAATTGTGGTATCTAAGTTCAAGAAATTCAGGGCTG  983

seq1  AAGAATAGACCCAGGCGGGTCCAGGCACAGCCAAACCCACCCTGTAGCTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAGACCCAGGCGGGTCCAGGCACAGCCAAACCCACCCTGTAGCTA  1033

seq1  AGAATGTCCGGCCATAAAAGATAAAAAAGAGAGTGCAGGAACTAGCCAGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTCCGGCCATAAAAGATAAAAAAGAGAGTGCAGGAACTAGCCAGG  1083

seq1  GCTATCAGGATGGACCAAATGGCCATCTGGCAGGATGGCCCCTCCCGGGC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCAGGATGGACCAAATGGCCATCTGGCAGGATGGCCCCTCCCGGGC  1133

seq1  AGCGCCTCCCTATAGCCCACCATAAATCTTACATTGACCAGGTGTCCTGC  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCCTCCCTATAGCCCACCATAAATCTTACATTGACCAGGTGTCCTGC  1183

seq1  TGACCTCGAGAATTC  1211
      |||||||||||||||
seq2  TGACCTCGAGAATTC  1198

seq1: chr5_68628989_68630035
seq2: B6Ng01-098J05.g_68_1112

seq1  GAATTCTATATAGGCATATGTTTAAATTCATAAATTCATGTGTGTATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATAGGCATATGTTTAAATTCATAAATTCATGTGTGTATATG  50

seq1  CATGTGAATATATGCTACATACACACACACACACACACACACACACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGAATATATGCTACATACACACACACACACACACACACACACACAC  100

seq1  ACACACACATATATATATATATATACACATGTACATATATATGCATACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATATATATATATATATACACATGTACATATATATGCATACAT  150

seq1  AAAGATACACACACCAAATGTAAAAATATCCCCACATACATTAAGAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATACACACACCAAATGTAAAAATATCCCCACATACATTAAGAATAA  200

seq1  AAATAACCCAAACAACAAAAATAAATGAACCAGCAAACAAAGTTGTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACCCAAACAACAAAAATAAATGAACCAGCAAACAAAGTTGTGTGT  250

seq1  TGATTTAAAGAAAAAATTTGATTGCCAGATACCCATTAGAACACATGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAAAGAAAAAATTTGATTGCCAGATACCCATTAGAACACATGACA  300

seq1  GTGAACAAAGGACTTAGAGCACTTCTTAATTTTTTAGGATTGAGAACTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACAAAGGACTTAGAGCACTTCTTAATTTTTTAGGATTGAGAACTGT  350

seq1  CGTCTGTTTGGAACTTGGAAATCTTTTTTCCAAACTCCGGTAGAGATGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTGTTTGGAACTTGGAAATCTTTTTTCCAAACTCCGGTAGAGATGTC  400

seq1  TTGGACGCAACAATTTATGTTTCTTGTCGACAGTTTTAACATCTTCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACGCAACAATTTATGTTTCTTGTCGACAGTTTTAACATCTTCATTT  450

seq1  TTCTCTTTCCTTTAAAGAGTTATTTTCAGGAAGAGCTCAGCCCTTGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTCCTTTAAAGAGTTATTTTCAGGAAGAGCTCAGCCCTTGCTTT  500

seq1  AGAGGACCATGGGGGGATATAAAGCACTCTTTGGACTAAAAGAGAGAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACCATGGGGGGATATAAAGCACTCTTTGGACTAAAAGAGAGAATG  550

seq1  CAATTGAAGAGCAGATGTTGAGGGGAGGGATTGCCTGTTGTCAACGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGAAGAGCAGATGTTGAGGGGAGGGATTGCCTGTTGTCAACGATTT  600

seq1  ATAGAAAGTACAATGAACTTATGAGAGCCAGGGGAGAAATGACATATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAGTACAATGAACTTATGAGAGCCAGGGGAGAAATGACATATCTG  650

seq1  GGACACCAGAAGCTGTTGCTACCAGTTGTACTACAATCTGCAAAACACGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACCAGAAGCTGTTGCTACCAGTTGTACTACAATCTGCAAAACACGA  700

seq1  GGAAAGCCAGTTAGGTTACTTTCCCATAAAAAGTGTCTTCTGTAGTTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCCAGTTAGGTTACTTTCCCATAAAAAGTGTCTTCTGTAGTTCAC  750

seq1  CATCTCTGTGGACTCAAGAGCAGAATGTTTCCTCGGGTTTTCCAAGCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTGTGGACTCAAGAGCAGAATGTTTCCTCGGGTTTTCCAAGCTAC  800

seq1  AGAACCCGAGGCAGGGATTCAGGTGTCTGTATTATATTAAAGAAGAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCGAGGCAGGGATTCAGGTGTCTGTATTATATTAAAGAAGAAACA  850

seq1  AGGGAACCAAAGTAAGGCTGTGCCGCAGCTTGGGTAAGAGGCAGTTTAAA  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGGGAACCAAAGTAAGGCTGTGCCGCAGCTTGGGT-AGAGGCAGTTTAAA  899

seq1  TACGAATGTAATGTGTGCCAGATCCAGCAGGTAGCCCTGTGATGGGACTG  950
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  TACGAATGTAATGTGTGCCAGATCCAGCAAGTAGCCCTGTGAT-GGACTG  948

seq1  CAGAGTTTATGTAGTTTTGACATAAAGGCAATCTTTTATCTTCCTGAGTC  1000
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAGAGTTTATGTAGTTTTGACATAAAGGCAATCTTTTATC-TCCTGAGTC  997

seq1  AGTAAGATACTGGTGTTAGGTTTTTGTGGCTGTGGATTTGG------GAA  1044
      ||| ||||||| |||||||| |||||| ||||| |||||||      |||
seq2  AGT-AGATACT-GTGTTAGG-TTTTGT-GCTGT-GATTTGGAGAACAGAA  1042

seq1  GAA  1047
      |||
seq2  GAA  1045