BAC Information

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BAC

Clone NameB6Ng01-100H08
Chromosome5 (Build37)
Map Location 83,833,481 - 83,944,789
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039434, Srd5a2l2
Downstream geneLOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100H08.bB6Ng01-100H08.g
ACCDH909952DH909953
length473555
definitionDH909952|Mus musculus domesticus DNA, BAC clone: B6Ng01-100H08, 5' end.DH909953|Mus musculus domesticus DNA, BAC clone: B6Ng01-100H08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,944,311 - 83,944,789)(83,833,481 - 83,834,041)
sequence
ttttgcaatgttaaaagaaaatatatgcttgctctctcctaagaattaaa
ggactggggtcacaggatactgattcataagacaatcaaaaggaaatcag
aaataaataactgaattgatatgtatataaaaacccgggcttttggtctg
catgagatgagctagcagagagctgagttgtctggaaatgtgtggagaat
gaaatcagctcttcaataagtttttttctaacaggacttctgacttggtc
agaacatccaatatgtttttatagaagcttctcttgctttggtcagaaaa
tccacgagctatccaaatagtttttataatttgtactagcagggaggagt
tgtctcaaccagagagttgtttgtttgtttgttgtttgttttgggttttt
tgttttgtttttaatagcaagagaaatctgtctagagcagaacagaaaat
acacggggggcgggggggggggg
actaataaactttttaaattttgaatttctgtttaaaatctgatttaaga
gcttatgtcacaactgtaaacacttttaatattatctactagatagacct
ttgttaaaggtatctattagatacccagacatatacacatttcaaaaaaa
aatgagttcaacaacagataattccctttagagaattaatgcatcatgaa
ataatataataaaaagaaagttttgttttgttttggttttggttttggtt
ttaaaggaaaggacagccagacactctagtcctccaagtaccaaccgacc
acatccccacacaagagctgccaaggactaaatgaccaaccaaagaatac
acatggaggggcccatggcttcagctacatatgtagcagaggatggtctt
atgtgacatcaatgggatgggaacctcttggtcctttggaccctgggtgg
ctggctcagtgtaggggaatgctagggctgtgaggcaggaatggatgggt
gggcgaggaagcacccttatagaagcaggggggaggaggatgggataggt
tgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_83944311_83944789
seq2: B6Ng01-100H08.b_45_523 (reverse)

seq1  CCCCCCCCCCCCGCCCCCCGTGTATTTTCTGTTCTGCTCTAGACAGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCGCCCCCCGTGTATTTTCTGTTCTGCTCTAGACAGATTT  50

seq1  CTCTTGCTATTAAAAACAAAACAAAAAACCCAAAACAAACAACAAACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCTATTAAAAACAAAACAAAAAACCCAAAACAAACAACAAACAAA  100

seq1  CAAACAACTCTCTGGTTGAGACAACTCCTCCCTGCTAGTACAAATTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACTCTCTGGTTGAGACAACTCCTCCCTGCTAGTACAAATTATAA  150

seq1  AAACTATTTGGATAGCTCGTGGATTTTCTGACCAAAGCAAGAGAAGCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATTTGGATAGCTCGTGGATTTTCTGACCAAAGCAAGAGAAGCTTC  200

seq1  TATAAAAACATATTGGATGTTCTGACCAAGTCAGAAGTCCTGTTAGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAACATATTGGATGTTCTGACCAAGTCAGAAGTCCTGTTAGAAAA  250

seq1  AAACTTATTGAAGAGCTGATTTCATTCTCCACACATTTCCAGACAACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTATTGAAGAGCTGATTTCATTCTCCACACATTTCCAGACAACTCA  300

seq1  GCTCTCTGCTAGCTCATCTCATGCAGACCAAAAGCCCGGGTTTTTATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTGCTAGCTCATCTCATGCAGACCAAAAGCCCGGGTTTTTATATA  350

seq1  CATATCAATTCAGTTATTTATTTCTGATTTCCTTTTGATTGTCTTATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCAATTCAGTTATTTATTTCTGATTTCCTTTTGATTGTCTTATGAA  400

seq1  TCAGTATCCTGTGACCCCAGTCCTTTAATTCTTAGGAGAGAGCAAGCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATCCTGTGACCCCAGTCCTTTAATTCTTAGGAGAGAGCAAGCATA  450

seq1  TATTTTCTTTTAACATTGCAAAAGAATTC  479
      |||||||||||||||||||||||||||||
seq2  TATTTTCTTTTAACATTGCAAAAGAATTC  479

seq1: chr5_83833481_83834041
seq2: B6Ng01-100H08.g_69_629

seq1  GAATTCACTAATAAACTTTTTAAATTTTGAATTTCTGTTTAAAATCTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAATAAACTTTTTAAATTTTGAATTTCTGTTTAAAATCTGAT  50

seq1  TTAAGAGCTTATGTCACAACTGTAAACACTTTTAATATTATCTACTAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGCTTATGTCACAACTGTAAACACTTTTAATATTATCTACTAGAT  100

seq1  AGACCTTTGTTAAAGGTATCTATTAGATACCCAGACATATACACATTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTTGTTAAAGGTATCTATTAGATACCCAGACATATACACATTTCA  150

seq1  AAAAAAAATGAGTTCAACAACAGATAATTCCCTTTAGAGAATTAATGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATGAGTTCAACAACAGATAATTCCCTTTAGAGAATTAATGCAT  200

seq1  CATGAAATAATATAATAAAAAGAAAGTTTTGTTTTGTTTTGGTTTTGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAATAATATAATAAAAAGAAAGTTTTGTTTTGTTTTGGTTTTGGTT  250

seq1  TTGGTTTTAAAGGAAAGGACAGCCAGACACTCTAGTCCTCCAAGTACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTAAAGGAAAGGACAGCCAGACACTCTAGTCCTCCAAGTACCAA  300

seq1  CCGACCACATCCCCACACAAGAGCTGCCAAGGACTAAATGACCAACCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACCACATCCCCACACAAGAGCTGCCAAGGACTAAATGACCAACCAAA  350

seq1  GAATACACATGGAGGGGCCCATGGCTTCAGCTACATATGTAGCAGAGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACACATGGAGGGGCCCATGGCTTCAGCTACATATGTAGCAGAGGAT  400

seq1  GGTCTTATGTGACATCAATGGGATGGGAACCTCTTGGTCCTTTGGACCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTATGTGACATCAATGGGATGGGAACCTCTTGGTCCTTTGGACCCT  450

seq1  GGGTGGCTGGCTCAGTGTAGGGGAATGCTAGGGCTGTGAGGCAGGAATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGCTGGCTCAGTGTAGGGGAATGCTAGGGCTGTGAGGCAGGAATGG  500

seq1  ATGGGTGGGCGAGGAAGCACCCTTATAGAAGCAGGGGGGAGGAGGATGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGGGCGAGGAAGCACCCTTATAGAAGCAGGGGGGAGGAGGATGGG  550

seq1  ATAGGTTGTTT  561
      |||||||||||
seq2  ATAGGTTGTTT  561