BAC Information

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BAC

Clone NameB6Ng01-102J23
Chromosome5 (Build37)4 (Build37)
Map Location 18,084,512 - 18,084,57779,907,493 - 79,908,271
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102J23.bB6Ng01-102J23.g
ACCDH911458DH911459
length928970
definitionDH911458|Mus musculus domesticus DNA, BAC clone: B6Ng01-102J23, 5' end.DH911459|Mus musculus domesticus DNA, BAC clone: B6Ng01-102J23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,512 - 18,084,577)(79,907,493 - 79,908,271)
sequence
gaattctttgtttagttctgagcctcattttttaatggggttatttggtt
ttctggagcccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggattggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattctgttgatggcctttttgtcttattgacagtgtctttt
gcattacagaaactttgcaatattatgaggttatatttgttgattcttga
tcttacagcacaagccattgctgttctattcaggaatttacccctcctag
gcatatatccagaagatgttccaaatggtaagaaggacacatgctccact
atgttcatagcagctttatttacaatagtcattagccagaaagaactcag
atttccctcaacagaggaatggatacagaaaatgtggtacattttacaga
atggtgtactatacagctattaaaaacaatgaatttatgaaattcctatg
gaaatggatggacctggagggtatcatcctgagtgaggtaacccaatcac
aaaagaacttacatggcatgtactcactgataagtggatattagcccaga
tacttagaatacccaagatacaagatataatctgcaaaacacaatgaact
caagaagaacgaagtccaaagtgtggacacttcaccccttcttagaattg
ggaacaaaacccccatggaaggagttacaaagacaaagtttggagctgag
acgaaaggatggaccatctagagatagccatgccctgggatccatcccat
tatcagcctccaaatgctgacagcattgcatacaccagcaacattttgct
gaaaaggaccctgatatagctgtttcttgtgaggctatgcacgggcctgg
caaacacagaaatggatgctcacagtca
gaattcatgcagttgcatccttctcaacagtctgtgttgcgggaacactt
cattaccaccattccccagctgaagagttctgaatccaggatggctcctt
ctcaacagtctgttttacgggaacctttatgaccgtgacccgcagttctg
gttcctgaatgagggatcttccttgcgctcgtgatggtaaccgtcccagg
ttttctcgtcccaggtcttctcgtcccaggtcttctcgtcccgtcccggg
ttttcttgtcccaggatttcagcaccaactcttacacgcgttctgggccg
gccaggaaaaacgcaacaaatggaatcttctgcggcaaaagctttattgc
ttacatcttcaggagccagagagcatgagagcaagagcgcaagagtgcaa
gagagcaagagcaagagagagcaagaaagcaagaaaaagaacaagaacaa
gaaaagcaagagaaagaatggcaaaaccccgtcccttttaaggagaatta
tcctccgcctaggacgtattactccctgattggctgcagcccatcggccc
agttgtcatcacgagaaaggcagaacacatggcgggaaaactgcccctgc
acatgtgcagattatgtttactacttagaacacagctgtcagcgccatct
tataatggcaaatgtgagggcggctcctcacatgtgttcttggattcggt
tagcgagaattttattgaggatttttgcatcgatattcataagagaaatt
ggtctgaagttctctatctttgttgggtctttctgtggattaggtatcag
agttatagtggcttcataaaatgagttgggtagagtaccttctacttcta
ttttgtgaaatagtttgtgaagaactgggaattagatcttctttgaaggt
ctgatagaactctgcactaacccgtctgggcctgggtttttttttgcctg
ggagactattaatactgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084512_18084577
seq2: B6Ng01-102J23.b_364_436 (reverse)

seq1  TTCTGG-------CTATTATAAATAAGGCTGCTATGAACATAGTGGAGCA  43
      ||||||       ||||| ||||||| |||||||||||||||||||||||
seq2  TTCTGGCTAATGACTATTGTAAATAAAGCTGCTATGAACATAGTGGAGCA  50

seq1  TGTGTCCTTCTTACCAGTTGGAA  66
      |||||||||||||||| ||||||
seq2  TGTGTCCTTCTTACCATTTGGAA  73

seq1: chr4_79907493_79908271
seq2: B6Ng01-102J23.g_67_845

seq1  GAATTCATGCAGTTGCATCCTTCTCAACAGTCTGTGTTGCGGGAACACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCAGTTGCATCCTTCTCAACAGTCTGTGTTGCGGGAACACTT  50

seq1  CATTACCACCATTCCCCAGCTGAAGAGTTCTGAATCCAGGATGGCTCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCACCATTCCCCAGCTGAAGAGTTCTGAATCCAGGATGGCTCCTT  100

seq1  CTCAACAGTCTGTTTTACGGGAACCTTTATGACCGTGACCCGCAGTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAGTCTGTTTTACGGGAACCTTTATGACCGTGACCCGCAGTTCTG  150

seq1  GTTCCTGAATGAGGGATCTTCCTTGCGCTCGTGATGGTAACCGTCCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGAATGAGGGATCTTCCTTGCGCTCGTGATGGTAACCGTCCCAGG  200

seq1  TTTTCTCGTCCCAGGTCTTCTCGTCCCAGGTCTTCTCGTCCCGTCCCGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCGTCCCAGGTCTTCTCGTCCCAGGTCTTCTCGTCCCGTCCCGGG  250

seq1  TTTTCTTGTCCCAGGATTTCAGCACCAACTCTTACACGCGTTCTGGGCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGTCCCAGGATTTCAGCACCAACTCTTACACGCGTTCTGGGCCG  300

seq1  GCCAGGAAAAACGCAACAAATGGAATCTTCTGCGGCAAAAGCTTTATTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAAAAACGCAACAAATGGAATCTTCTGCGGCAAAAGCTTTATTGC  350

seq1  TTACATCTTCAGGAGCCAGAGAGCATGAGAGCAAGAGCGCAAGAGTGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCTTCAGGAGCCAGAGAGCATGAGAGCAAGAGCGCAAGAGTGCAA  400

seq1  GAGAGCAAGAGCAAGAGAGAGCAAGAAAGCAAGAAAAAGAACAAGAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAAGAGCAAGAGAGAGCAAGAAAGCAAGAAAAAGAACAAGAACAA  450

seq1  GAAAAGCAAGAGAAAGAATGGCAAAACCCCGTCCCTTTTAAGGAGAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCAAGAGAAAGAATGGCAAAACCCCGTCCCTTTTAAGGAGAATTA  500

seq1  TCCTCCGCCTAGGACGTATTACTCCCTGATTGGCTGCAGCCCATCGGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCGCCTAGGACGTATTACTCCCTGATTGGCTGCAGCCCATCGGCCC  550

seq1  AGTTGTCATCACGAGAAAGGCAGAACACATGGCGGGAAAACTGCCCCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCATCACGAGAAAGGCAGAACACATGGCGGGAAAACTGCCCCTGC  600

seq1  ACATGTGCAGATTATGTTTACTACTTAGAACACAGCTGTCAGCGCCATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGCAGATTATGTTTACTACTTAGAACACAGCTGTCAGCGCCATCT  650

seq1  TATAATGGCAAATGTGAGGGCGGCTCCTCACATGTGTTCTTGGATTCGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGGCAAATGTGAGGGCGGCTCCTCACATGTGTTCTTGGATTCGGT  700

seq1  TAGCGAGAATTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGAGAATTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATT  750

seq1  GGTCTGAAGTTCTCTATCTTTGTTGGGTC  779
      |||||||||||||||||||||||||||||
seq2  GGTCTGAAGTTCTCTATCTTTGTTGGGTC  779