BAC Information

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BAC

Clone NameB6Ng01-103C23
Chromosome5 (Build37)
Map Location 75,242,940 - 75,398,350
singlet/doubletdoublet
Overlap geneEG619945
Upstream geneUsp46, 2700023E23Rik, Rasl11b, Scfd2, Fip1l1, Lnx1
Downstream geneChic2, Gsh2, LOC100039083, Olfr1401-ps1, Pdgfra, LOC100039125, LOC100039143, LOC100039158, LOC100039169, Kit, EG664874, Kdr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103C23.bB6Ng01-103C23.g
ACCDH911857DH911858
length1,1911,101
definitionDH911857|Mus musculus domesticus DNA, BAC clone: B6Ng01-103C23, 5' end.DH911858|Mus musculus domesticus DNA, BAC clone: B6Ng01-103C23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,397,135 - 75,398,350)(75,242,940 - 75,244,059)
sequence
gaattctctgatttggaagccggccaggtctacataatgagcattgtcta
ggccagctaaagctccagagtgagaacctgtcttaggttcttattacccc
tacaaaaaaaatctacaagacactacattgataggaccattccctccatt
taagactcgatttaactaggtaataacattgctatgaatggagtcttcat
aaaaggaacttgccttctctcatgatatcaaaccctttaacttctgtttc
tttttatctgctaaagctcttagtgttgaggctccacagaagagttaacc
actgtcaggtgtgatgacattgagtagtctgacttaggcaggaggataaa
gagttcctgcccaccctggtccacactgtgggatccatctcaaacacaaa
acaacagcaaagaactctagtattataaacttactagtagtgacaataga
aataagctaggcagaactagaaggcaagagaggttactgcactggtaccc
tgggctagctcacaaggagtgccaggagtacacacagccttgtgctttct
tttctacagactcacaacaggaattatttgaaattacactgctgcagaca
gagtttccctccagtgttgatgccctttgagagagtagcaggaggccact
gagaacagaatacttctttttattgtttttttgtttgtttgtttttcgag
acagggtttttctgtggccctggctgtcctggaactcactttgtagacca
ggctggcctcgaactcagaaatccacctgcctctgcctctgcctcccaag
tgctgggattaaaggcatgtgccaccacgcctggcaattattgtttattt
ttttttaatgtgataactttcagacaaaccttctagtatgttgtaggggc
atctttctagctgttttaagtggcatcatcggatagttttcagaactcct
gctgagcagcagttgtctgagaaagtgctttcctgcctgagcattggcta
actgaagcatgcaagagctggtagcagtcttcaaagttgacaaagtacaa
aggtgattcaaaagcatatatatatatatttctactatctaccaataagc
attggctaaacaaaaccgtctgttctttagtagcttctttgttaggtaga
ccttgatctacctagaaggtacgtcaattgggctatgttgc
gaattccatctgttaaaactttcatctcgcaggcatggctaacactggag
ccaaatctgtcctccatcacccccttaagcggtgtctgtctacagttaaa
agtgcagggcaaagctaagtgctataatacatgggcagagtacttcctgg
gcatatgcaaggtcctgggtgccatctccggcattgggcaagaaaaataa
tgcgtcagaaagattgtgtgagggagctaggaatgagaaaggtagtgcct
tgaatcccagtacttacaaggcagaaacaggggatatctctgaatttgag
tctagcctgttctacatagagttccagccagccagaggtacaaagtgaga
ccttgcctcaaaataaagaaataagtaagtaaataaatgagtaaataaat
aggctaggggcatttgggagttcacatggagcattctctatatccctgta
gatggtttgctgagctctctagattctaacagagggaagggcttatcagt
gggattgcaggtatgagtgaagggacaggatcactgtgctataggtacag
caaacctactgtagtattgctgtctctgtctgaaaacagaaagaaaacaa
aactccagggtgaccaagatacactgcggttgagtgacttgtgtatagaa
cgtggatgtaacgttgatggtgcctgtcctgtattattatggaatctgtt
gagagtaaaatgatagcttggtgtggcaactcatgcttataatctttcct
ttcatagaccaagcaggaggatttagagtataaggcagctcacgctatat
ggcataacctgtgtatgcatatatatgtagccaggtgcatgcaatagcct
gtagaagttctcaactctctagttctcttgcccagacagttgtacctcct
gcttcccatctcccggcttccagcctccccagttcacttctgactcttta
cgtagtccctccatgtggtagagaggacgagtagcagagatccaaggctg
tgttatgcacacgtaataatagcccagcttgggagtttgacaaactgagc
tcttgtggtttagattctacctcgcaaattcagagcagaaggactggacg
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_75397135_75398350
seq2: B6Ng01-103C23.b_44_1234 (reverse)

seq1  GCAACATAACCC-ATCTACGTACCTTCTTAAGTATGGATCAAAGTCTTAA  49
      |||||||| ||| ||  |||||||||| || |||  |||||| ||| || 
seq2  GCAACATAGCCCAATTGACGTACCTTC-TAGGTA--GATCAAGGTC-TAC  46

seq1  CTAACCAAAAAGAAAGCTACTTAAGGAAAACAGACCGTGTTTTGTTTAGC  99
      |||||   |||| |||||||| |||   |||||||   ||||||||||||
seq2  CTAAC---AAAG-AAGCTACTAAAG---AACAGAC--GGTTTTGTTTAGC  87

seq1  AATGGCTTTAATTTGTTAGGAATAGTAG-AATATATATATATATGCTTTT  148
       |  ||||    ||| |||  ||||||| |||||||||||||||||||||
seq2  CAATGCTT---ATTGGTAG--ATAGTAGAAATATATATATATATGCTTTT  132

seq1  GAAATTCACCTTTGTACTTTGTCAACTTTGAAGACTGCTACCAGCCTTCC  198
      |||  ||||||||||||||||||||||||||||||||||||||||    |
seq2  GAA--TCACCTTTGTACTTTGTCAACTTTGAAGACTGCTACCAGC---TC  177

seq1  TTGCATGCTTCAGTTAGCCAAATGCTCAGGCAGGAAAGCACTTTTCTCAG  248
      ||||||||||||||||||| ||||||||||||||||||||| ||||||| 
seq2  TTGCATGCTTCAGTTAGCC-AATGCTCAGGCAGGAAAGCAC-TTTCTCA-  224

seq1  GACAACTGCCTGCTCAGCAGGAGTTCTGAAAACTATCCGATGATGCCCAC  298
      |||||||| |||||||||||||||||||||||||||||||||||| ||||
seq2  GACAACTG-CTGCTCAGCAGGAGTTCTGAAAACTATCCGATGATG-CCAC  272

seq1  TTAAAACAGCTAGAAAGATGCCCCTACAACATACTAGAAGGTTTGTCTGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACAGCTAGAAAGATGCCCCTACAACATACTAGAAGGTTTGTCTGA  322

seq1  AAGTTATCACATT-AAAAAAAATAAACAATAATTGCCAGGCGTGGTGGCA  397
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAGTTATCACATTAAAAAAAAATAAACAATAATTGCCAGGCGTGGTGGCA  372

seq1  CATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGAGGCAGGTGGATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGAGGCAGGTGGATT  422

seq1  TCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAG  472

seq1  GGCCACAGAAAAACCCTGTCTCGAAAAACAAACAAACAAAAAAACAATAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAGAAAAACCCTGTCTCGAAAAACAAACAAACAAAAAAACAATAA  522

seq1  AAAGAAGTATTCTGTTCTCAGTGGCCTCCTGCTACTCTCTCAAAGGGCAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGTATTCTGTTCTCAGTGGCCTCCTGCTACTCTCTCAAAGGGCAT  572

seq1  CAACACTGGAGGGAAACTCTGTCTGCAGCAGTGTAATTTCAAATAATTCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTGGAGGGAAACTCTGTCTGCAGCAGTGTAATTTCAAATAATTCC  622

seq1  TGTTGTGAGTCTGTAGAAAAGAAAGCACAAGGCTGTGTGTACTCCTGGCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGAGTCTGTAGAAAAGAAAGCACAAGGCTGTGTGTACTCCTGGCA  672

seq1  CTCCTTGTGAGCTAGCCCAGGGTACCAGTGCAGTAACCTCTCTTGCCTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGTGAGCTAGCCCAGGGTACCAGTGCAGTAACCTCTCTTGCCTTC  722

seq1  TAGTTCTGCCTAGCTTATTTCTATTGTCACTACTAGTAAGTTTATAATAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTGCCTAGCTTATTTCTATTGTCACTACTAGTAAGTTTATAATAC  772

seq1  TAGAGTTCTTTGCTGTTGTTTTGTGTTTGAGATGGATCCCACAGTGTGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTCTTTGCTGTTGTTTTGTGTTTGAGATGGATCCCACAGTGTGGA  822

seq1  CCAGGGTGGGCAGGAACTCTTTATCCTCCTGCCTAAGTCAGACTACTCAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTGGGCAGGAACTCTTTATCCTCCTGCCTAAGTCAGACTACTCAA  872

seq1  TGTCATCACACCTGACAGTGGTTAACTCTTCTGTGGAGCCTCAACACTAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCACACCTGACAGTGGTTAACTCTTCTGTGGAGCCTCAACACTAA  922

seq1  GAGCTTTAGCAGATAAAAAGAAACAGAAGTTAAAGGGTTTGATATCATGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTAGCAGATAAAAAGAAACAGAAGTTAAAGGGTTTGATATCATGA  972

seq1  GAGAAGGCAAGTTCCTTTTATGAAGACTCCATTCATAGCAATGTTATTAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGCAAGTTCCTTTTATGAAGACTCCATTCATAGCAATGTTATTAC  1022

seq1  CTAGTTAAATCGAGTCTTAAATGGAGGGAATGGTCCTATCAATGTAGTGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTAAATCGAGTCTTAAATGGAGGGAATGGTCCTATCAATGTAGTGT  1072

seq1  CTTGTAGATTTTTTTTGTAGGGGTAATAAGAACCTAAGACAGGTTCTCAC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAGATTTTTTTTGTAGGGGTAATAAGAACCTAAGACAGGTTCTCAC  1122

seq1  TCTGGAGCTTTAGCTGGCCTAGACAATGCTCATTATGTAGACCTGGCCGG  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGCTTTAGCTGGCCTAGACAATGCTCATTATGTAGACCTGGCCGG  1172

seq1  CTTCCAAATCAGAGAATTC  1216
      |||||||||||||||||||
seq2  CTTCCAAATCAGAGAATTC  1191

seq1: chr5_75242940_75244059
seq2: B6Ng01-103C23.g_67_1167

seq1  GAATTCCATCTGTTAAAACTTTCATCTCGCAGGCATGGCTAACACTGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTGTTAAAACTTTCATCTCGCAGGCATGGCTAACACTGGAG  50

seq1  CCAAATCTGTCCTCCATCACCCCCTTAAGCGGTGTCTGTCTACAGTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCTGTCCTCCATCACCCCCTTAAGCGGTGTCTGTCTACAGTTAAA  100

seq1  AGTGCAGGGCAAAGCTAAGTGCTATAATACATGGGCAGAGTACTTCCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGGGCAAAGCTAAGTGCTATAATACATGGGCAGAGTACTTCCTGG  150

seq1  GCATATGCAAGGTCCTGGGTGCCATCTCCGGCATTGGGCAAGAAAAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGCAAGGTCCTGGGTGCCATCTCCGGCATTGGGCAAGAAAAATAA  200

seq1  TGCGTCAGAAAGATTGTGTGAGGGAGCTAGGAATGAGAAAGGTAGTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTCAGAAAGATTGTGTGAGGGAGCTAGGAATGAGAAAGGTAGTGCCT  250

seq1  TGAATCCCAGTACTTACAAGGCAGAAACAGGGGATATCTCTGAATTTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCCAGTACTTACAAGGCAGAAACAGGGGATATCTCTGAATTTGAG  300

seq1  TCTAGCCTGTTCTACATAGAGTTCCAGCCAGCCAGAGGTACAAAGTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCCTGTTCTACATAGAGTTCCAGCCAGCCAGAGGTACAAAGTGAGA  350

seq1  CCTTGCCTCAAAATAAAGAAATAAGTAAGTAAATAAATGAGTAAATAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCTCAAAATAAAGAAATAAGTAAGTAAATAAATGAGTAAATAAAT  400

seq1  AGGCTAGGGGCATTTGGGAGTTCACATGGAGCATTCTCTATATCCCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGGGGCATTTGGGAGTTCACATGGAGCATTCTCTATATCCCTGTA  450

seq1  GATGGTTTGCTGAGCTCTCTAGATTCTAACAGAGGGAAGGGCTTATCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTTGCTGAGCTCTCTAGATTCTAACAGAGGGAAGGGCTTATCAGT  500

seq1  GGGATTGCAGGTATGAGTGAAGGGACAGGATCACTGTGCTATAGGTACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGCAGGTATGAGTGAAGGGACAGGATCACTGTGCTATAGGTACAG  550

seq1  CAAACCTACTGTAGTATTGCTGTCTCTGTCTGAAAACAGAAAGAAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTACTGTAGTATTGCTGTCTCTGTCTGAAAACAGAAAGAAAACAA  600

seq1  AACTCCAGGGTGACCAAGATACACTGCGGTTGAGTGACTTGTGTATAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAGGGTGACCAAGATACACTGCGGTTGAGTGACTTGTGTATAGAA  650

seq1  CGTGGATGTAACGTTGATGGTGCCTGTCCTGTATTATTATGGAATCTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGATGTAACGTTGATGGTGCCTGTCCTGTATTATTATGGAATCTGTT  700

seq1  GAGAGTAAAATGATAGCTTGGTGTGGCAACTCATGCTTATAATCTTTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTAAAATGATAGCTTGGTGTGGCAACTCATGCTTATAATCTTTCCT  750

seq1  TTCATAGACCAAGCAGGAGGATTTAGAGTATAAGGCAGCTCAGGCTATAT  800
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTCATAGACCAAGCAGGAGGATTTAGAGTATAAGGCAGCTCACGCTATAT  800

seq1  GGCATAACCTGTGTATGCATATATATGTAGCCAGGTGCATGCAATAGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAACCTGTGTATGCATATATATGTAGCCAGGTGCATGCAATAGCCT  850

seq1  GTAGAAGGTTCTCAACTCTCTAGTTCTCTTGCCCAGACAGTTGTACCCTC  900
      |||||| |||||||||||||||||||||||||||||||||||||| ||||
seq2  GTAGAA-GTTCTCAACTCTCTAGTTCTCTTGCCCAGACAGTTGTA-CCTC  898

seq1  CTGCTTCCCATCTCCCGGCTTCCAGCCTCCCCCAGTTCACTTCCTGACTC  950
      |||||||||||||||||||||||||||| ||||||||||||| |||||||
seq2  CTGCTTCCCATCTCCCGGCTTCCAGCCT-CCCCAGTTCACTT-CTGACTC  946

seq1  TTTACGTAGTCCCTCCCATGTGGTAGAGAGGGACGAGTAGGCAGGAGATC  1000
      |||||||||||||| |||||||||||||| ||||||||| ||| ||||||
seq2  TTTACGTAGTCCCT-CCATGTGGTAGAGA-GGACGAGTA-GCA-GAGATC  992

seq1  CAAAGGGCTGTGTTATGCAACCACGTAAT-ATAGCCCAGGCTTTGGGAAG  1049
      |||  ||||||||||||||  |||||||| |||||||| ||||  || ||
seq2  CAA--GGCTGTGTTATGCA--CACGTAATAATAGCCCA-GCTT--GGGAG  1035

seq1  TTTGACAAACTGAGCTC-TGT-GTTTAGATTCCTAACCTCGCAGACATTT  1097
      ||||||||||||||||| ||| ||||||||||   ||||||||   | ||
seq2  TTTGACAAACTGAGCTCTTGTGGTTTAGATTC--TACCTCGCA---AATT  1080

seq1  CAGAGCAAGAAGGACCTGGACGT  1120
      |||||| ||||||| ||||||||
seq2  CAGAGC-AGAAGGA-CTGGACGT  1101