BAC Information

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BAC

Clone NameB6Ng01-104B05
Chromosome5 (Build37)
Map Location 31,979,694 - 32,133,659
singlet/doubletdoublet
Overlap geneRbks, Bre
Upstream geneDpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, LOC100040000
Downstream geneFosl2, LOC672217, Plb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104B05.bB6Ng01-104B05.g
ACCDH912479DH912480
length1,006831
definitionDH912479|Mus musculus domesticus DNA, BAC clone: B6Ng01-104B05, 5' end.DH912480|Mus musculus domesticus DNA, BAC clone: B6Ng01-104B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,979,694 - 31,980,626)(32,132,829 - 32,133,659)
sequence
gaattctgttttcgctgctcaagtagctggggtataggcctgtaccatca
gacctggccttcattttgtatattggatacttatgcacttaaatctatat
ggtaagaatctattactgaattaaggcataccacttcagattcatttgtc
cttctgccttactttttagctacctgttctttgttggtagcaactagctt
cttgtggacacagactaatggagccttgcctacagcttctccatttcttt
gctatgatcctttaggatagcccatggaggtcaaaggtcagttctctctt
gcttacacgtgggtcctgaggattgaattcaggagtcagggctggcagcc
agcacctcacacccaccattatctttgcatgggctctttcttccctgctc
tgactcccctgcccctgcctgtgcttcctccactgaggggaacctgtgag
tgttcaggcaggggcatggaccgtatggcaagaggagagaatggaaactt
ggttcagatcgacactgtcaacctgaatcagacttgggaagtctgatggc
aggcagttcattgccagcatatttaaaacacagaacaatttgggaaaagg
tttccaggcaacaatcattctaacctaggcatacaataaagcttaaagta
tgacttagaacagtggttttcaaccttcctaaagttgcacccctttaata
tagttcctcatgtggtgaccccataccataacattattttgttgcatttc
ctaactgtaattttgctactgttatgaactataatgtaaatatctgctct
ttttgatagtcttaggtagcttctgtgaagagttagtcaacttccaaagg
ggtcatgacccacaggttgagaaatgctgacttagaaactgctttacaaa
gtacatgtgaccatgagggtgtgctctctaactaaagggcctagaatcta
ctgtggtctctgactgagatagcatcaagtcggtgggccataaaatacat
gtaata
gaattcactatctggaacaaaataagaagaaacaaggcatacaaatattg
agctaaacgatcacagtattcgtattctcttattttattctgatttgcat
tctcttattgataatacatagttttaccttgagaaggtatgtgggaatgt
tgctgaaatctactggtaacttcaatagaaaacgagctgaaaattcacca
gtctgtaaggagaaaaaaggattaaaatatacaacagattgataagtaac
aattatgtccaagaaaaaattcaatatacagacaactcctattagggttt
cctaacacaagacagaaaaataaggttggaaagtaggatagaattaaaaa
gaatccttaaactattaaaggggcacagttttaatgaaagaactcttcat
tttaatgcatgaaaacattttaaagtagtattgggtttttaaaaaaaatg
aaaagaatacatgaatggatattatttctcaaaaaaaaaaaactgaaata
ggaagagaccaccttgcccctgagacttatctgctttcctaagcattcat
accatcgtcctgactctgtaacttaccaccatgtatgctgacatccatta
caggatgtgtgcaagtccatacaaagaccaaacttcctctaacgtggagc
aatacatcaatataaacccaggaaagtttctaatctcttgaaagttcaca
aatattatcaattaatattttcagtaattagaaatttaaaacacttaagc
tataaataataactccagttaattgctttgtgtatgtgtgtatatgtgca
tgagtatgaatgtgtgtttatgtgtgagtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_31979694_31980626
seq2: B6Ng01-104B05.b_42_974

seq1  GAATTCTGTTTTCGCTGCTCAAGTAGCTGGGGTATAGGCCTGTACCATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTTCGCTGCTCAAGTAGCTGGGGTATAGGCCTGTACCATCA  50

seq1  GACCTGGCCTTCATTTTGTATATTGGATACTTATGCACTTAAATCTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGCCTTCATTTTGTATATTGGATACTTATGCACTTAAATCTATAT  100

seq1  GGTAAGAATCTATTACTGAATTAAGGCATACCACTTCAGATTCATTTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGAATCTATTACTGAATTAAGGCATACCACTTCAGATTCATTTGTC  150

seq1  CTTCTGCCTTACTTTTTAGCTACCTGTTCTTTGTTGGTAGCAACTAGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCCTTACTTTTTAGCTACCTGTTCTTTGTTGGTAGCAACTAGCTT  200

seq1  CTTGTGGACACAGACTAATGGAGCCTTGCCTACAGCTTCTCCATTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGACACAGACTAATGGAGCCTTGCCTACAGCTTCTCCATTTCTTT  250

seq1  GCTATGATCCTTTAGGATAGCCCATGGAGGTCAAAGGTCAGTTCTCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGATCCTTTAGGATAGCCCATGGAGGTCAAAGGTCAGTTCTCTCTT  300

seq1  GCTTACACGTGGGTCCTGAGGATTGAATTCAGGAGTCAGGGCTGGCAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACACGTGGGTCCTGAGGATTGAATTCAGGAGTCAGGGCTGGCAGCC  350

seq1  AGCACCTCACACCCACCATTATCTTTGCATGGGCTCTTTCTTCCCTGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTCACACCCACCATTATCTTTGCATGGGCTCTTTCTTCCCTGCTC  400

seq1  TGACTCCCCTGCCCCTGCCTGTGCTTCCTCCACTGAGGGGAACCTGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCCCTGCCCCTGCCTGTGCTTCCTCCACTGAGGGGAACCTGTGAG  450

seq1  TGTTCAGGCAGGGGCATGGACCGTATGGCAAGAGGAGAGAATGGAAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGGCAGGGGCATGGACCGTATGGCAAGAGGAGAGAATGGAAACTT  500

seq1  GGTTCAGATCGACACTGTCAACCTGAATCAGACTTGGGAAGTCTGATGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGATCGACACTGTCAACCTGAATCAGACTTGGGAAGTCTGATGGC  550

seq1  AGGCAGTTCATTGCCAGCATATTTAAAACACAGAACAATTTGGGAAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTTCATTGCCAGCATATTTAAAACACAGAACAATTTGGGAAAAGG  600

seq1  TTTCCAGGCAACAATCATTCTAACCTAGGCATACAATAAAGCTTAAAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGCAACAATCATTCTAACCTAGGCATACAATAAAGCTTAAAGTA  650

seq1  TGACTTAGAACAGTGGTTTTCAACCTTCCTAAAGTTGCACCCCTTTAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTAGAACAGTGGTTTTCAACCTTCCTAAAGTTGCACCCCTTTAATA  700

seq1  TAGTTCCTCATGTGGTGACCCCATACCATAACATTATTTTGTTGCATTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCCTCATGTGGTGACCCCATACCATAACATTATTTTGTTGCATTTC  750

seq1  CTAACTGTAATTTTGCTACTGTTATGAACTATAATGTAAATATCTGCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGTAATTTTGCTACTGTTATGAACTATAATGTAAATATCTGCTCT  800

seq1  TTTTGATAGTCTTAGGTAGCTTCTGTGAAGAGTTAGTCAACTTCCAAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATAGTCTTAGGTAGCTTCTGTGAAGAGTTAGTCAACTTCCAAAGG  850

seq1  GGTCATGACCCACAGGTTGAGAAATGCTGACTTAGAAACTGCTTTACAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATGACCCACAGGTTGAGAAATGCTGACTTAGAAACTGCTTTACAAA  900

seq1  GTACATGTGACCATGAGGGTGTGCTCTCTAACT  933
      |||||||||||||||||||||||||||||||||
seq2  GTACATGTGACCATGAGGGTGTGCTCTCTAACT  933

seq1: chr5_32132829_32133659
seq2: B6Ng01-104B05.g_68_898 (reverse)

seq1  ACACTCACACATAAACACACATTCATACTCATGCACATATACACACATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACACATAAACACACATTCATACTCATGCACATATACACACATAC  50

seq1  ACAAAGCAATTAACTGGAGTTATTATTTATAGCTTAAGTGTTTTAAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCAATTAACTGGAGTTATTATTTATAGCTTAAGTGTTTTAAATTT  100

seq1  CTAATTACTGAAAATATTAATTGATAATATTTGTGAACTTTCAAGAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTACTGAAAATATTAATTGATAATATTTGTGAACTTTCAAGAGATT  150

seq1  AGAAACTTTCCTGGGTTTATATTGATGTATTGCTCCACGTTAGAGGAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTTTCCTGGGTTTATATTGATGTATTGCTCCACGTTAGAGGAAGT  200

seq1  TTGGTCTTTGTATGGACTTGCACACATCCTGTAATGGATGTCAGCATACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTTTGTATGGACTTGCACACATCCTGTAATGGATGTCAGCATACA  250

seq1  TGGTGGTAAGTTACAGAGTCAGGACGATGGTATGAATGCTTAGGAAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTAAGTTACAGAGTCAGGACGATGGTATGAATGCTTAGGAAAGCA  300

seq1  GATAAGTCTCAGGGGCAAGGTGGTCTCTTCCTATTTCAGTTTTTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTCTCAGGGGCAAGGTGGTCTCTTCCTATTTCAGTTTTTTTTTTT  350

seq1  TGAGAAATAATATCCATTCATGTATTCTTTTCATTTTTTTTAAAAACCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATAATATCCATTCATGTATTCTTTTCATTTTTTTTAAAAACCCA  400

seq1  ATACTACTTTAAAATGTTTTCATGCATTAAAATGAAGAGTTCTTTCATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTACTTTAAAATGTTTTCATGCATTAAAATGAAGAGTTCTTTCATTA  450

seq1  AAACTGTGCCCCTTTAATAGTTTAAGGATTCTTTTTAATTCTATCCTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTGCCCCTTTAATAGTTTAAGGATTCTTTTTAATTCTATCCTACT  500

seq1  TTCCAACCTTATTTTTCTGTCTTGTGTTAGGAAACCCTAATAGGAGTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACCTTATTTTTCTGTCTTGTGTTAGGAAACCCTAATAGGAGTTGT  550

seq1  CTGTATATTGAATTTTTTCTTGGACATAATTGTTACTTATCAATCTGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATATTGAATTTTTTCTTGGACATAATTGTTACTTATCAATCTGTTG  600

seq1  TATATTTTAATCCTTTTTTCTCCTTACAGACTGGTGAATTTTCAGCTCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTAATCCTTTTTTCTCCTTACAGACTGGTGAATTTTCAGCTCGT  650

seq1  TTTCTATTGAAGTTACCAGTAGATTTCAGCAACATTCCCACATACCTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTGAAGTTACCAGTAGATTTCAGCAACATTCCCACATACCTTCT  700

seq1  CAAGGTAAAACTATGTATTATCAATAAGAGAATGCAAATCAGAATAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTAAAACTATGTATTATCAATAAGAGAATGCAAATCAGAATAAAAT  750

seq1  AAGAGAATACGAATACTGTGATCGTTTAGCTCAATATTTGTATGCCTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAATACGAATACTGTGATCGTTTAGCTCAATATTTGTATGCCTTGT  800

seq1  TTCTTCTTATTTTGTTCCAGATAGTGAATTC  831
      |||||||||||||||||||||||||||||||
seq2  TTCTTCTTATTTTGTTCCAGATAGTGAATTC  831