BAC Information

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BAC

Clone NameB6Ng01-106F10
Chromosome5 (Build37)
Map Location 15,140,111 - 15,141,213
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d
Downstream gene4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106F10.bB6Ng01-106F10.g
ACCDH914108DH914109
length1,2161,106
definitionDH914108|Mus musculus domesticus DNA, BAC clone: B6Ng01-106F10, 5' end.DH914109|Mus musculus domesticus DNA, BAC clone: B6Ng01-106F10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctcacctgtcttggagtagccggagttggtatttgagtcacag
tcctttttctagcctctgtcagccaccgttttccatcccagagggtatat
cccaggtagaccacttccatctgacatacctgggcttttttagcagaggc
ccggtaacccaactcacccagttctgctagcaatctcttggtcccctgcc
agcattctcttccgtggttgcagcaaggagcaacatattgaagcagagtt
acctgggagttttcagctcggaaggaggctaaatctcgatgtagagcctc
atcaaaaagagtgggggagtttttgaactcctggggtaaccacatccagg
tcaattgtcctgtttgtccagtgtcaggatctctccactcaaagacgaat
atgggctggctggagggatgtaacttcaggcaaaagaaagcatcttttaa
atcaagtactgtataccattttcgctccggagggaatgagctgaggaggt
tatagggattaggaacagttgggtaaatatcttggaccctcttattgacc
tctctcaggtcttggactggtcagtagtcactcgtgccaggtttctttac
cgatagtaaaggagtattccagggtgactggcaaggtatcaaaataccta
attgtaatagtctctgaatatgtggcctgattccatctcttgctttacgg
ctcattggatattgttgcactcctataggggttgcatccgtcttcagtcc
cacaaccacaggggaaaactctgacagccattcccatgcctgcagtctct
gcccatgctctagggaaagcagtcaaccagttcttttaggtctggcacct
ctgtttgctttatgccttcatgcaatcgggtttctttctcaagctgcagg
gcttagactacggaggtgggagattccaatgttactctcggccttcttag
gtaaatctgattctgggccttttaattagtcagaagaatctcttcttaga
aggcggttgcgggacactcagatgaccagatgaatgactctcacttggcc
tttcccagatctacatgcatgcatggtcagggtttgtttctgaccatgct
caatccctatgtcttattttaatttccaaggatgttcaacagaagttcgg
cctgggtcattaaaggtctatgggccttttcccactagggttccatgact
ctggggagatgggtca
gaattctgcactaaacccatctgttcctgggatttgtttggttgagagac
tattaatgactgcttctaattctttaagggttatgggacagccttagctc
aggggcatagatagagacccaaccttaccagttctcctgtctggtggcac
agtccactttgccccacaatgaaatgtggatgttgtagattaaagaatat
attgaaatttgagcagtaaaatgaaaatcattcattgagagaaaaaaaat
tgtcttcaagtggtcattcttaatccatcctttttacaaaaccttaataa
atattcttacaaaataagcatgaaattaattgtaaaagaagaaagaaatg
tttctggcctcttgccataattgcttttcaaattttttcttattaatttt
aattagacattcagagaaagtagacttgagaaacagtttctagttgatat
gtaaatggtacttaacagatcacagagatgactgaaggagcaaggaccta
gaagatattcaaagaatggctcattattgaccaagtggttcttaacactc
tcataagtaacttctctcacctctaatcatgtaactatggttctatacta
tatgtaatccatatatgtttctttttaacaatatcctttaagactaccca
gcactatatattttcaatgtaataattgagcaatatgctcaagtgtcctg
ttgctttatgtgtaaaaatttgcaataatctttgagaataagaaaaattt
tatttttgtccagatataatatgtcttagttagggttttactgctgtaaa
cagacactatgaccatggcaactcttaaaaggagaccatttaattgggcc
tgtcctacaggttcagagtttcagtccattatcatcaaggcaggagcatg
gcagtgccagggcaggcatggttcaaggaggagctgagaggtcttagatc
cttcatctgaaggccagttgggagaaggactgggcttccagaaagctaag
gaggaaagtctcaaagcaagaaagacttctcttccaacaggccagaactt
actcatactcctaacagtggcatctgggcaagcaattcaagccaccacct
aactac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15140111_15141213
seq2: B6Ng01-106F10.g_68_1173 (reverse)

seq1  GTAGT---GTGGTGGCTTGAATATGCTTGGCCCAGGATGGCACTGTTAGG  47
      |||||   |||||||||||||| ||||| ||||| |||| ||||||||||
seq2  GTAGTTAGGTGGTGGCTTGAAT-TGCTT-GCCCA-GATGCCACTGTTAGG  47

seq1  AGGTATGGAGT-AGGTCTGGCCTTGTTGGAGGAAGGAAGTCTGTCATGCT  96
      | |||| |||| || ||||||| ||||||| ||  ||||||| || ||||
seq2  A-GTAT-GAGTAAGTTCTGGCC-TGTTGGAAGA--GAAGTCTTTCTTGCT  92

seq1  TTGAGACCTTCCTCC-TAGCTTCCTGGAAG-CCAGT-CTTCT-CCAACTG  142
      ||||||| ||||||| |||||| ||||||| ||||| ||||| |||||||
seq2  TTGAGACTTTCCTCCTTAGCTTTCTGGAAGCCCAGTCCTTCTCCCAACTG  142

seq1  GCCTTCAGATGAA-GATCT-AGAACTCTCAGCTCCTCC-TGAACCATGCC  189
      ||||||||||||| ||||| ||| |||||||||||||| |||||||||||
seq2  GCCTTCAGATGAAGGATCTAAGACCTCTCAGCTCCTCCTTGAACCATGCC  192

seq1  TGCCCTGGCACTGCCATGCTCCTGCCTTGATGATAATGGACTGAAACTCT  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGGCACTGCCATGCTCCTGCCTTGATGATAATGGACTGAAACTCT  242

seq1  GAACCTGTAGGACAGGCCCAATTAAATGGTCTCCTTTTAAGAGTTGCCAT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGTAGGACAGGCCCAATTAAATGGTCTCCTTTTAAGAGTTGCCAT  292

seq1  GGTCATAGTGTCTGTTTACAGCAGTAAAACCCTAACTAAGACATATTATA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATAGTGTCTGTTTACAGCAGTAAAACCCTAACTAAGACATATTATA  342

seq1  TCTGGACAAAAATAAAATTTTTCTTATTCTCAAAGATTATTGCAAATTTT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACAAAAATAAAATTTTTCTTATTCTCAAAGATTATTGCAAATTTT  392

seq1  TACACATAAAGCAACAGGACACTTGAGCATATTGCTCAATTATTACATTG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATAAAGCAACAGGACACTTGAGCATATTGCTCAATTATTACATTG  442

seq1  AAAATATATAGTGCTGGGTAGTCTTAAAGGATATTGTTAAAAAGAAACAT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATAGTGCTGGGTAGTCTTAAAGGATATTGTTAAAAAGAAACAT  492

seq1  ATATGGATTACATATAGTATAGAACCATAGTTACATGATTAGAGGTGAGA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGATTACATATAGTATAGAACCATAGTTACATGATTAGAGGTGAGA  542

seq1  GAAGTTACTTATGAGAGTGTTAAGAACCACTTGGTCAATAATGAGCCATT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTACTTATGAGAGTGTTAAGAACCACTTGGTCAATAATGAGCCATT  592

seq1  CTTTGAATATCTTCTAGGTCCTTGCTCCTTCAGTCATCTCTGTGATCTGT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAATATCTTCTAGGTCCTTGCTCCTTCAGTCATCTCTGTGATCTGT  642

seq1  TAAGTACCATTTACATATCAACTAGAAACTGTTTCTCAAGTCTACTTTCT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACCATTTACATATCAACTAGAAACTGTTTCTCAAGTCTACTTTCT  692

seq1  CTGAATGTCTAATTAAAATTAATAAGAAAAAATTTGAAAAGCAATTATGG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGTCTAATTAAAATTAATAAGAAAAAATTTGAAAAGCAATTATGG  742

seq1  CAAGAGGCCAGAAACATTTCTTTCTTCTTTTACAATTAATTTCATGCTTA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGCCAGAAACATTTCTTTCTTCTTTTACAATTAATTTCATGCTTA  792

seq1  TTTTGTAAGAATATTTATTAAGGTTTTGTAAAAAGGATGGATTAAGAATG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAAGAATATTTATTAAGGTTTTGTAAAAAGGATGGATTAAGAATG  842

seq1  ACCACTTGAAGACAATTTTTTTTCTCTCAATGAATGATTTTCATTTTACT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTGAAGACAATTTTTTTTCTCTCAATGAATGATTTTCATTTTACT  892

seq1  GCTCAAATTTCAATATATTCTTTAATCTACAACATCCACATTTCATTGTG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAATTTCAATATATTCTTTAATCTACAACATCCACATTTCATTGTG  942

seq1  GGGCAAAGTGGACTGTGCCACCAGACAGGAGAACTGGTAAGGTTGGGTCT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAAGTGGACTGTGCCACCAGACAGGAGAACTGGTAAGGTTGGGTCT  992

seq1  CTATCTATGCCCCTGAGCTAAGGCTGTCCCATAACCCTTAAAGAATTAGA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATGCCCCTGAGCTAAGGCTGTCCCATAACCCTTAAAGAATTAGA  1042

seq1  AGCAGTCATTAATAGTCTCTCAACCAAACAAATCCCAGGAACAGATGGGT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCATTAATAGTCTCTCAACCAAACAAATCCCAGGAACAGATGGGT  1092

seq1  TTAGTGCAGAATTC  1103
      ||||||||||||||
seq2  TTAGTGCAGAATTC  1106