BAC Information

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BAC

Clone NameB6Ng01-106H19
Chromosome5 (Build37)
Map Location 90,160,918 - 90,324,486
singlet/doubletdoublet
Overlap geneAdamts3
Upstream geneMobkl1a, Dck, Mkrn1-ps1, Slc4a4, Gc, LOC622870, Npffr2, LOC631105
Downstream geneEG665733, Cox18, Ankrd17, Alb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106H19.bB6Ng01-106H19.g
ACCDH914213DH914214
length1,221828
definitionDH914213|Mus musculus domesticus DNA, BAC clone: B6Ng01-106H19, 5' end.DH914214|Mus musculus domesticus DNA, BAC clone: B6Ng01-106H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,160,918 - 90,162,161)(90,323,636 - 90,324,486)
sequence
gaattctgccaacatcttgaactatcctataagaatactattaacacatg
cctccaatattaacaactcaggcctataattccagctactagggaagctg
aggcagaaaggacacagaaagtccaaagctaaagcgagctacagggtgag
ttgaaagccagtctgtgaaatttaatgagagcttgtctcaaaataaagag
taagaaaaaagactggagatacagctctttggtaaaggtctgatttttag
tagcatatgcacatatactgagtctacttgactagatgttggttttagtt
ttgtaacgcgctaatcatagaactagtctaggaccttggatatccgaact
acagagccaaaaaaggtgggtattatcttaagcctttaaggtctgtgaca
agtgatcacacagtggtggcatcgtaagagacctgaatgggctataaatg
agttcccagtttagcagtgcctcctgcccatgtgtgatttggagaaagct
gtataacccaagaaaggaagaaaggaagaaaggaaggaaggaaaggaaag
gaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaagaaaag
aaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaaggaaagaagga
agaaaggaaggaagaaagggcatgagggtgcgggaggaggaaaagagatc
attgttttggttggttttttgttgttttgttttttaaggtaacttacagg
ctttgaaaaacgaattggaatttagcctaataggtttttaatgttttggg
attttcctgctaattttaaccttcctgtcagttctaggctgggttcagaa
aaactgcattttgcccatcatgattgcttgcattttcctgcctttttaca
tacttggcaattcttgattaagagagccaccattgtaaattttatctttt
ctggatgctggatatatttgtcttcctgcaaacatcttgagcttcccttg
gatgcagtaatgacatgaacacagtttgtttcctttgggtgtgtgtgtaa
gattatagcaaggctagagtaagcatctggtcagagtatgctgctactgg
aggcatacctctctgggcatcttcagtgctgatgaatcaggaaacaaatc
agcctgaactgcatgagccggtctgttgccatattccaatttgggtgagg
ctcagtttgctattctccaca
gaattcatttagattccacacaggtgttctttaacacccacaactcacta
ggaataataactcccaataagaataattttaaaaatcggaaatgggtcta
ggacaaaaattcactaagattcccaaaagataagtagaaaaaaaattccc
atgataggatctaatgcatgttcttgaattgtgtggtgatgtaattctca
acaagtaagtgctaagtttctcgtgctgttgcagtgtgtgggtgaggttc
ccgctcttcttttttgtcttgtttgcttgtttgttttgaggtatatatat
atgtagctaagatggcttaagctcccctgccccaaatatgaatcctagaa
ggtatctcaatatatttgaatgctactgagatcaaaatgcaaacgctaga
gtctcccctcctgtctctctcaagtgtatgtgtacacacacattatgtgt
gttgctgtgttcttaggtatgtgattctatactgttaggagatagaaata
caaacatctagctatttgattgtagttattatgactctgtggtttcttga
gctgtgtatttttcctcgctgtttaaaatatatatatatatatatatata
tatatattgcaatttgatgcacattagagtcaccttagaggaaggcactt
cattgagaaagtgcctctataagattgggtataggcaagcctgtaggcat
tttcttattagcaattgatacgccagctcagcctattgggtgtggtgcca
gctcacctggctgtgtctgggtgcttaaaaaagcagttgacacccatgga
gcagcatggacacatttcttcatgcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_90160918_90162161
seq2: B6Ng01-106H19.b_42_1262

seq1  GAATTCTGCCAACATCTTGAACTATCCTATAAGAATACTATTAACACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCAACATCTTGAACTATCCTATAAGAATACTATTAACACATG  50

seq1  CCTCCAATATTAACAACTCAGGCCTATAATTCCAGCTACTAGGGAAGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAATATTAACAACTCAGGCCTATAATTCCAGCTACTAGGGAAGCTG  100

seq1  AGGCAGAAAGGACACAGAAAGTCCAAAGCTAAAGCGAGCTACAGGGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAAAGGACACAGAAAGTCCAAAGCTAAAGCGAGCTACAGGGTGAG  150

seq1  TTGAAAGCCAGTCTGTGAAATTTAATGAGAGCTTGTCTCAAAATAAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGCCAGTCTGTGAAATTTAATGAGAGCTTGTCTCAAAATAAAGAG  200

seq1  TAAGAAAAAAGACTGGAGATACAGCTCTTTGGTAAAGGTCTGATTTTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAAAGACTGGAGATACAGCTCTTTGGTAAAGGTCTGATTTTTAG  250

seq1  TAGCATATGCACATATACTGAGTCTACTTGACTAGATGTTGGTTTTAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATATGCACATATACTGAGTCTACTTGACTAGATGTTGGTTTTAGTT  300

seq1  TTGTAACGCGCTAATCATAGAACTAGTCTAGGACCTTGGATATCCGAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACGCGCTAATCATAGAACTAGTCTAGGACCTTGGATATCCGAACT  350

seq1  ACAGAGCCAAAAAAGGTGGGTATTATCTTAAGCCTTTAAGGTCTGTGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCCAAAAAAGGTGGGTATTATCTTAAGCCTTTAAGGTCTGTGACA  400

seq1  AGTGATCACACAGTGGTGGCATCGTAAGAGACCTGAATGGGCTATAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCACACAGTGGTGGCATCGTAAGAGACCTGAATGGGCTATAAATG  450

seq1  AGTTCCCAGTTTAGCAGTGCCTCCTGCCCATGTGTGATTTGGAGAAAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCAGTTTAGCAGTGCCTCCTGCCCATGTGTGATTTGGAGAAAGCT  500

seq1  GTATAACCCAAGAAAGGAAGAAAGGAAGAAAGGAAGGAAGGAAAGGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAACCCAAGAAAGGAAGAAAGGAAGAAAGGAAGGAAGGAAAGGAAAG  550

seq1  GAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGAAAAG  600
      |||||||||||||||||||||||||||||||||||||||||     ||||
seq2  GAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGG-----AAAG  595

seq1  AAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGGAAAG  645

seq1  AAGGAAGAAAGGAAGGAAGAAAGGGCATGAGGGTGCGGGAGGAGGAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGAAAGGAAGGAAGAAAGGGCATGAGGGTGCGGGAGGAGGAAAAG  695

seq1  AGATCATTGTTTTGGTTGGTTTTTTGTTGTTTTGTTTTTTAAGGTAACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATTGTTTTGGTTGGTTTTTTGTTGTTTTGTTTTTTAAGGTAACTT  745

seq1  ACAGGCTTTGAAAAACGAATTGGAATTTAGCCTAATAGGTTTTTAATGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTTTGAAAAACGAATTGGAATTTAGCCTAATAGGTTTTTAATGTT  795

seq1  TTGGGATTTTCCTGCTAATTTTAACCTTCCTGTCAGTTCTAGGCTGGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTGGGATTTTCCTGCTAATTTTAACCTTCCTGTCAGTTCTAGGCTGGGTT  845

seq1  CAGAAAAACTGCATTTTG-CCATCATGATTGCTTGCATTTTCCTGCCTTT  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAGAAAAACTGCATTTTGCCCATCATGATTGCTTGCATTTTCCTGCCTTT  895

seq1  TTACATACTTGGCAATTCTTGATTAAGAGAGCCAACATTGTAAATTTTAT  949
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTACATACTTGGCAATTCTTGATTAAGAGAGCCACCATTGTAAATTTTAT  945

seq1  C-TTTCTGGATGCTGGATATATTTGTCTTCCTGCAAACATTCTTGAGCTT  998
      | ||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTTTTCTGGATGCTGGATATATTTGTCTTCCTGCAAACA-TCTTGAGCTT  994

seq1  CCCTTGGATGCAGTTAAATGACATGAACACAGTTTGTTCCTTTTGGGTGT  1048
      ||||||||||||||  |||||||||||||||||||||| | |||||||| 
seq2  CCCTTGGATGCAGT--AATGACATGAACACAGTTTGTTTCCTTTGGGTG-  1041

seq1  TGTGTGTAAGATTTATTAGGCAGGGCTAGAGT-AGCATCTGTCTAGAGGT  1097
      ||||||||||| ||||   ||| ||||||||| ||||||||   ||| ||
seq2  TGTGTGTAAGA-TTAT--AGCAAGGCTAGAGTAAGCATCTGGTCAGA-GT  1087

seq1  AGTGGCTGCTACT-GAGGCATACTCCTTCTGGGCATCCTCCAGTGCTGTA  1146
      |   ||||||||| ||||||||| |  ||||||||| || |||||||| |
seq2  A--TGCTGCTACTGGAGGCATAC-CTCTCTGGGCAT-CTTCAGTGCTG-A  1132

seq1  TGAATCAGGAGACGATACAGTCTGACCTGCATGGAAGCACGTACTGTCGC  1196
      |||||||||| || |  ||| |||| |||||||  ||| ||  |||| ||
seq2  TGAATCAGGAAACAAATCAGCCTGAACTGCATG--AGC-CGGTCTGTTGC  1179

seq1  CACTACTCC-ATTTGGGTGGAGGGTTCTAGGTTTGCTTATTTCTCCACA  1244
      || || ||| |||||||| ||||   ||  |||||||   |||||||||
seq2  CA-TATTCCAATTTGGGT-GAGG---CTCAGTTTGCT--ATTCTCCACA  1221

seq1: chr5_90323636_90324486
seq2: B6Ng01-106H19.g_71_898 (reverse)

seq1  AAGGCCATGAAGAAATGCTGCTCACTGGCTTGCTTC-CCATGGCTTGCTC  49
      |||| |||||||||||| ||  ||      |||| | |||||| |   ||
seq2  AAGG-CATGAAGAAATG-TGTCCA------TGCTGCTCCATGGGT--GTC  40

seq1  AACCTGCTTTTTTTATAGCACCCAGGACCACCAGCCCAGGCTGAGCTGGG  99
      || ||||||||||   |||||||| |||   ||| ||||| |||||| ||
seq2  AA-CTGCTTTTTT--AAGCACCCA-GAC--ACAG-CCAGG-TGAGCT-GG  81

seq1  CACCACACACAATAGGCTGAGCTGGCCCTATCAATTGCTAATTAAGAAAA  149
      |||||||| |||||||||||||||| | ||||||||||||| ||||||||
seq2  CACCACACCCAATAGGCTGAGCTGG-CGTATCAATTGCTAA-TAAGAAAA  129

seq1  TGCCCTACAGGCTTGCCTATAACCCAATCTTATAGAGGCACTTTCTCAAT  199
      || ||||||||||||||||| |||||||||||||||||||||||||||| 
seq2  TG-CCTACAGGCTTGCCTAT-ACCCAATCTTATAGAGGCACTTTCTCAA-  176

seq1  TGAAGTGCCTTCCTCTAAGGTGACTCTAATGTGCATCAAATTGCAATATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGCCTTCCTCTAAGGTGACTCTAATGTGCATCAAATTGCAATATA  226

seq1  TATATATATATATATATATATATATTTTAAACAGCGAGGAAAAATACACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATTTTAAACAGCGAGGAAAAATACACA  276

seq1  GCTCAAGAAACCACAGAGTCATAATAACTACAATCAAATAGCTAGATGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGAAACCACAGAGTCATAATAACTACAATCAAATAGCTAGATGTT  326

seq1  TGTATTTCTATCTCCTAACAGTATAGAATCACATACCTAAGAACACAGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTCTATCTCCTAACAGTATAGAATCACATACCTAAGAACACAGCA  376

seq1  ACACACATAATGTGTGTGTACACATACACTTGAGAGAGACAGGAGGGGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATAATGTGTGTGTACACATACACTTGAGAGAGACAGGAGGGGAG  426

seq1  ACTCTAGCGTTTGCATTTTGATCTCAGTAGCATTCAAATATATTGAGATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGCGTTTGCATTTTGATCTCAGTAGCATTCAAATATATTGAGATA  476

seq1  CCTTCTAGGATTCATATTTGGGGCAGGGGAGCTTAAGCCATCTTAGCTAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTAGGATTCATATTTGGGGCAGGGGAGCTTAAGCCATCTTAGCTAC  526

seq1  ATATATATATACCTCAAAACAAACAAGCAAACAAGACAAAAAAGAAGAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATACCTCAAAACAAACAAGCAAACAAGACAAAAAAGAAGAGC  576

seq1  GGGAACCTCACCCACACACTGCAACAGCACGAGAAACTTAGCACTTACTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCTCACCCACACACTGCAACAGCACGAGAAACTTAGCACTTACTT  626

seq1  GTTGAGAATTACATCACCACACAATTCAAGAACATGCATTAGATCCTATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGAATTACATCACCACACAATTCAAGAACATGCATTAGATCCTATC  676

seq1  ATGGGAATTTTTTTTCTACTTATCTTTTGGGAATCTTAGTGAATTTTTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAATTTTTTTTCTACTTATCTTTTGGGAATCTTAGTGAATTTTTGT  726

seq1  CCTAGACCCATTTCCGATTTTTAAAATTATTCTTATTGGGAGTTATTATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGACCCATTTCCGATTTTTAAAATTATTCTTATTGGGAGTTATTATT  776

seq1  CCTAGTGAGTTGTGGGTGTTAAAGAACACCTGTGTGGAATCTAAATGAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTGAGTTGTGGGTGTTAAAGAACACCTGTGTGGAATCTAAATGAAT  826

seq1  TC  851
      ||
seq2  TC  828