BAC Information

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BAC

Clone NameB6Ng01-106I22
Chromosome5 (Build37)9 (Build37)
Map Location 18,084,511 - 18,084,5753,663,141 - 3,664,032
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106I22.bB6Ng01-106I22.g
ACCDH914262DH914263
length1,0451,083
definitionDH914262|Mus musculus domesticus DNA, BAC clone: B6Ng01-106I22, 5' end.DH914263|Mus musculus domesticus DNA, BAC clone: B6Ng01-106I22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,511 - 18,084,575)(3,663,141 - 3,664,032)
sequence
gaattctcaagtgagaatgctgaagagctgagaagcacctgaataaatat
tcaacatccctaatcatcaggcatatgcaaatccaaacaaccttaagatt
ccacctcactccagtcagaattactaaggtcaaaacttcaggtgacagta
gatgctggcgaggatgtctacaaagaggaacactcctccattgctgttgg
gaatgtcaaccactctgaatatcagtctggcggttcctcagaaaattgga
catagtactaccggaagatccagcaatacatctcgggcatatacccagaa
gaagttcccaatggtaataaggacacatgctccactatgttcatagtagc
cctatttataatagccagaagatgaaaagaacccagatgtccctctacag
aggaatgcatgcagaaaatttggtacatttacacaatggagtactactca
gctattaaaaacaatgaatttatgaaattctttggcaaatggaagtatct
ggaggatatcatccttagtgaggtaacccaatcacataagaagtcacttg
atatgcactcactgataatgaatattatcccagaaacttagaatacccaa
gatacaatttgcaaaacgcaagaaaatcaagaaaaacgaagatcaaagtg
cagatacttcattactccttagaatagggaacaaaacacacatggaagga
gatatgaagacaaagtttggagctaagacgaaatgatggaccatccagag
actaccccacctggggatccatcccataaccagccaacaaacacagacac
tattgcatatgccagcaagattttttctgaaaggaccctgatataccgat
ctcgagtgaggctatgccagtatctggcaaatacagaagtggatgctcac
agtcatctatagaatgggaacactgggccccaagggaggagctagataaa
gtacccaaggagctaaaggggtctgcaaccctataggtggaacataatat
gaactaaccagtgccccagagctcgtatctctagctgcatatgta
gaattctgtaggcttcgtgtatgttcatgggcatctctttctttaggttt
ggaaagttttcttctataattttgttaaagatatcagctggccctttagg
ttgaaaatcttcattctcatctactcctattatccataggtttggtgttc
tcattgtgtcctggatttcctggatgttttgagttaggatctttttgcat
tttttttttttttgattgttgtgtctatgtttcctatggaatcttctgca
cctctctctcttccatctcttgtattctgttgctgatgctctcatctatg
gttcaaagtttctttcctacggtttctatctccagcattgtctcactttg
ggtttattttattgtttctacttccctttttaggtcttgtatggtttttt
ttcagttccatcacctttttggttgtgttttcctatatttctttaagcac
ttctacatctttagcagtgttctcctgtatttctttaagtgagttattaa
agtccttcttgttgtcctctaccagcatcatgagatatgattttaaatct
gattcttgctttttgggtgtgttggggaatccaggattggctgaggtggt
agtgctgggttctgatgatggtgagtggtcttggtttctgttagtaagat
tcctatgtttgcctttcatcatctggttatctgtggaattggttgttata
gttgtctctagttggaaatctctaaaaccatttactttagtatgtgcaca
gcaaaaataaataaataaataaagtttgaaactgacaatcagtaatctaa
tttatgttgcctttatcactgctggtatttcacatttctggtgattttct
tgtttaactaagcattaattttcataatatactatttataaatatcagtt
tgagtgtttatagcattgattctatcagaccaaccattacatatctataa
cattttcagaatttatttataatttcacatcatggataacagccccaaat
tttctcttctcccagtcctcccttacaatcctcctcaatggcccctgctc
ttctctggacatgaaactagagatgaagatgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084511_18084575
seq2: B6Ng01-106I22.b_355_418 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      ||||||||||||||||||| |||| |||||||||||||||||||||||||
seq2  CTTCTGGCTATTATAAATAGGGCTACTATGAACATAGTGGAGCATGTGTC  50

seq1  CTTCTTACCAGTTGG  65
      ||| |||||| ||||
seq2  CTTATTACCA-TTGG  64

seq1: chr9_3663141_3664032
seq2: B6Ng01-106I22.g_281_1151

seq1  TGATTGTTGTGTCTATGTTTCCTATGGAATCTTCTGCACCTCTCTCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTTGTGTCTATGTTTCCTATGGAATCTTCTGCACCTCTCTCTCTT  50

seq1  CCATCTCTTGTATTCTGTTGCTGATGCTCTCATCTATGGTTCAAAGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTTGTATTCTGTTGCTGATGCTCTCATCTATGGTTCAAAGTTTC  100

seq1  TTTCCTACGGTTTCTATCTCCAGCATTGTCTCACTTTGGGTTTATTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTACGGTTTCTATCTCCAGCATTGTCTCACTTTGGGTTTATTTTAT  150

seq1  TGTTTCTACTTCCCTTTTTAGGTCTTGTATGGTTTTTTTTCAGTTCCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTACTTCCCTTTTTAGGTCTTGTATGGTTTTTTTTCAGTTCCATC  200

seq1  ACCTTTTTGGTTGTGTTTTCCTATATTTCTTTAAGCACTTCTACATCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTTGGTTGTGTTTTCCTATATTTCTTTAAGCACTTCTACATCTTT  250

seq1  AGCAGTGTTCTCCTGTATTTCTTTAAGTGAGTTATTAAAGTCCTTCTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGTTCTCCTGTATTTCTTTAAGTGAGTTATTAAAGTCCTTCTTGT  300

seq1  TGTCCTCTACCAGCATCATGAGATATGATTTTAAATCTGATTCTTGCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCTACCAGCATCATGAGATATGATTTTAAATCTGATTCTTGCTTT  350

seq1  TTGGGTGTGTTGGGGAATCCAGGATTGGCTGAGGTGGTAGTGCTGGGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGTGTTGGGGAATCCAGGATTGGCTGAGGTGGTAGTGCTGGGTTC  400

seq1  TGATGATGGTGAGTGGTCTTGGTTTCTGTTAGTAAGATTCCTATGTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATGGTGAGTGGTCTTGGTTTCTGTTAGTAAGATTCCTATGTTTGC  450

seq1  CTTTCATCATCTGGTTATCTGTGGAATTGGTTGTTATAGTTGTCTCTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATCATCTGGTTATCTGTGGAATTGGTTGTTATAGTTGTCTCTAGT  500

seq1  TGGAAATCTCTAAAACCATTTACTTTAGTATGTGCACAGCAAAAATAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATCTCTAAAACCATTTACTTTAGTATGTGCACAGCAAAAATAAAT  550

seq1  AAATAAATAAAGTTTGAAACTGACAATCAGTAATCTAATTTTATGTTGCC  600
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAATAAATAAAGTTTGAAACTGACAATCAGTAATCTAA-TTTATGTTGCC  599

seq1  TTTATCACTGCTGGTATTTCACATTTCTGGTGATTTTCTTGTTTTAACTA  650
      ||||||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  TTTATCACTGCTGGTATTTCACATTTCTGGTGATTTTCTTG-TTTAACT-  647

seq1  AAGCATT-ATTTTCATAATATACTATTTATAAATATCAGTTTTGAGTGTT  699
      ||||||| ||||||||||||||||||||||||||||||| ||||||||||
seq2  AAGCATTAATTTTCATAATATACTATTTATAAATATCAG-TTTGAGTGTT  696

seq1  TATAGCATTGATTCTTATCAGACCAACCATTAACATATCTATAAACATTT  749
      |||||||||||||| |||||||||||||||| |||||||||| |||||||
seq2  TATAGCATTGATTC-TATCAGACCAACCATT-ACATATCTAT-AACATTT  743

seq1  TCAAGAATTTATTTTATTAATTTCACATCAT-GATAACAGCCCCCAATTT  798
      || |||||||||||   |||||||||||||| |||||||||||| |||||
seq2  TC-AGAATTTATTT--ATAATTTCACATCATGGATAACAGCCCCAAATTT  790

seq1  TCCTCTCTTCCCAGTCCCTCCCTTACAAATCCCTCCTCCAATTGCCCCCT  848
      | ||||  ||||||| ||||||||||||   |||||||  | || |||||
seq2  T-CTCTTCTCCCAGT-CCTCCCTTACAA--TCCTCCTC--AATGGCCCCT  834

seq1  GCTCTTCTCCTTGGACATGTAGTACTAGCAGGATGAAGCATGCC  892
      |||||||||  |||||||| |  |||||   ||||||| |||||
seq2  GCTCTTCTC--TGGACATGAA--ACTAG--AGATGAAG-ATGCC  871