BAC Information

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BAC

Clone NameB6Ng01-107G24
Chromosome5 (Build37)
Map Location 134,558,324 - 134,708,350
singlet/doubletdoublet
Overlap geneGats, Wbscr16, Gtf2ird2, Ncf1
Upstream geneLOC100039731, LOC666038, LOC100039750
Downstream geneGtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107G24.bB6Ng01-107G24.g
ACCDH914907DH914908
length1,0041,148
definitionDH914907|Mus musculus domesticus DNA, BAC clone: B6Ng01-107G24, 5' end.DH914908|Mus musculus domesticus DNA, BAC clone: B6Ng01-107G24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,558,324 - 134,559,324)(134,707,206 - 134,708,350)
sequence
gaattctatattctggatatctgtacatcacaatctatatgctgatattt
aatcacttgtgcaatacattacggaataatgaggtgttctcgtgagtgga
attaatgatcctataaaggaaaactggaccattaaaatgtctctgtgagt
aaaggacttcatgatcgagggagagagccctcctcataagctgtcccctg
accttcacataggcacccacacacctacggaaggaaggaaggaaggaagg
aaggaaggaaggaaggaaggaaggaaggaaggaagacatgtgatagctaa
gtcacagtgttctagtgctatgaaagacaccatgaacatagcaactctta
taaggaaaccatttaattggaggcttgtttagagttcagagatttagtcc
actgtcatctaggaagcaggatggcaggcagacatggtggtggagaaggt
actaagagttctacatccagatcagcaggcatcagggagagagagtgaca
ccaggcctggcttgagaacataaaacctcaaagcctacccccagtggcat
acttcctccaacaaggcaacacttactaatagtgccaccccttatgtgcc
tacaggggccatttatccaacccgccacatacaataagtaaacctaccaa
aaggcactatctataagaagcgaggtagccctgtccagccgctccctcta
ctggagattcaacctgggacctctcagtccaagactgtgagcagccaagt
tctcctgttcagccaggtgcagtggcatccagctgtctgttccctccttc
ccttgtgtgggtctcggaaatcagattcgggccatgaggcttggcagcaa
acacctttgtttattttaagctacatgcgttgtttattcatccacttatt
gtgtgtatatgtgttcagcccatgtgtcatggttgtattggcatggaggt
cagagacaactgggtgggaagtcatttcatggggaccctttactgagaac
tgga
gaattccagggtagcctgaatagcttatcttagaacgacaagaaaggtta
gtgatgtagctgggtggtagagcactttgcgggggtggaacaccagagac
gggctaaagacgtggctcggaagtagaaggctctgtacttttagaatctt
cagacttgcaccataacctggccccacccactttctctgggtcctcgcca
gagtcattataaggaggcacagcattgtgccagtcaggttgtagacagaa
gaagtcttgagacctgtgaccctggtgacctggtagcttctgagccaccc
actggggaacaggagagggcagaggcactgccttacctcccaccccacct
ctgctgctttaaagttcttttctttttttttaagatttatttatttattt
catgtatgtgtgtacactgtcactgtcttcagaagagggcatcagatccc
cattacagatggttgtgagccaccacgtggtggctgggaattgaactcag
gacctctggaagagcagatagtgctcttaaccactgagccatctctctag
cccctgccactttatttttctaaacagggtttctctgtgtagcccaggct
gtcctggaactcaccctgtagaccaggttagtctctaactcagagagccg
gcttgcctcagcctccagagtgctgggattaaaggcatgtgccaccacca
tcaccaggcgcagccctgccccctttaaaactgtttcactatatctctgg
ctggcctggaactcacatctgcctgccctctgccacactagggagataca
caatgtttctctgtccatctgcttccttctctgtctgcatagtcagtcca
ccgtagtcaccaccatcagtctagcccaggacccaggcttcactccttcc
caggaaatcccgtctagtcagctcagggtgaggctctgcaagagaggcct
gctgaccgcggctttttgtctcttctcttcagtgttggtgacattagagt
cctcctccactgctggaataaagacctttgccaccatggctggcttccaa
gttccttccaggcctgagctgtctgggaagtccaatctcagaagggctag
tacacgggcaaatgttgtctttacctatagtggggtatctactgatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_134558324_134559324
seq2: B6Ng01-107G24.b_46_1049

seq1  GAATTCTATATTCTGGATATCTGTACATCACAATCTATATGCTGATATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATTCTGGATATCTGTACATCACAATCTATATGCTGATATTT  50

seq1  AATCACTTGTGCAATACATTACGGAATAATGAGGTGTTCTCGTGAGTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTTGTGCAATACATTACGGAATAATGAGGTGTTCTCGTGAGTGGA  100

seq1  ATTAATGATCCTATAAAGGAAAACTGGACCATTAAAATGTCTCTGTGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGATCCTATAAAGGAAAACTGGACCATTAAAATGTCTCTGTGAGT  150

seq1  AAAGGACTTCATGATCGAGGGAGAGAGCCCTCCTCATAAGCTGTCCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACTTCATGATCGAGGGAGAGAGCCCTCCTCATAAGCTGTCCCCTG  200

seq1  ACCTTCACATAGGCACCCACACACCTACGGAAGGAAGGAAGGAAGGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCACATAGGCACCCACACACCTACGGAAGGAAGGAAGGAAGGAAGG  250

seq1  AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGACATGTGATAGCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGACATGTGATAGCTAA  300

seq1  GTCACAGTGTTCTAGTGCTATGAAAGACACCATGAACATAGCAACTCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGTGTTCTAGTGCTATGAAAGACACCATGAACATAGCAACTCTTA  350

seq1  TAAGGAAACCATTTAATTGGAGGCTTGTTTAGAGTTCAGAGATTTAGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAACCATTTAATTGGAGGCTTGTTTAGAGTTCAGAGATTTAGTCC  400

seq1  ACTGTCATCTAGGAAGCAGGATGGCAGGCAGACATGGTGGTGGAGAAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCATCTAGGAAGCAGGATGGCAGGCAGACATGGTGGTGGAGAAGGT  450

seq1  ACTAAGAGTTCTACATCCAGATCAGCAGGCATCAGGGAGAGAGAGTGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAGTTCTACATCCAGATCAGCAGGCATCAGGGAGAGAGAGTGACA  500

seq1  CCAGGCCTGGCTTGAGAACATAAAACCTCAAAGCCTACCCCCAGTGGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCTGGCTTGAGAACATAAAACCTCAAAGCCTACCCCCAGTGGCAT  550

seq1  ACTTCCTCCAACAAGGCAACACTTACTAATAGTGCCACCCCTTATGTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTCCAACAAGGCAACACTTACTAATAGTGCCACCCCTTATGTGCC  600

seq1  TACAGGGGCCATTTATCCAACCCGCCACATACAATAAGTAAACCTACCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGGCCATTTATCCAACCCGCCACATACAATAAGTAAACCTACCAA  650

seq1  AAGGCACTATCTATAAGAAGCGAGGTAGCCCTGTCCAGCCGCTCCCTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACTATCTATAAGAAGCGAGGTAGCCCTGTCCAGCCGCTCCCTCTA  700

seq1  CTGGAGATTCAACCTGGGACCTCTCAGTCCAAGACTGTGAGCAGCCAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGATTCAACCTGGGACCTCTCAGTCCAAGACTGTGAGCAGCCAAGT  750

seq1  TCTCCTGTTCAGCCAGGTGCAGTGGCATCCAGCTGTCTGTTCCCTCCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGTTCAGCCAGGTGCAGTGGCATCCAGCTGTCTGTTCCCTCCTTC  800

seq1  CCTTGTGTGGGTCTCGGAAATCAGATTCGGGCCATGAGGCTTGGCAGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGTGGGTCTCGGAAATCAGATTCGGGCCATGAGGCTTGGCAGCAA  850

seq1  ACACCTTTTGTTTTATTTTAAGCTACATGCGTTTGTTTATTCATCCACTT  900
      ||||||||   |||||||||||||||||||| ||||||||||||||||||
seq2  ACACCTTT--GTTTATTTTAAGCTACATGCG-TTGTTTATTCATCCACTT  897

seq1  ATTGTGTGTATATGTGTTCAG-CCATGTGCCATGG-TGTATT-GCATGGA  947
      ||||||||||||||||||||| ||||||| ||||| |||||| |||||||
seq2  ATTGTGTGTATATGTGTTCAGCCCATGTGTCATGGTTGTATTGGCATGGA  947

seq1  GGTCAGAGGACAACT-GGTGGG-AGTCATTTCAT-GGGACCC-TTACTGA  993
      ||||||| ||||||| |||||| ||||||||||| ||||||| |||||||
seq2  GGTCAGA-GACAACTGGGTGGGAAGTCATTTCATGGGGACCCTTTACTGA  996

seq1  GAACTGGA  1001
      ||||||||
seq2  GAACTGGA  1004

seq1: chr5_134707206_134708350
seq2: B6Ng01-107G24.g_66_1212 (reverse)

seq1  CATCAGTAGACA-CCCAC-ATAGGT-AAGACAACATCTGACCGTGTACTA  47
      |||||||||| | ||||| |||||| |||||||||| || ||||||||||
seq2  CATCAGTAGATACCCCACTATAGGTAAAGACAACATTTGCCCGTGTACTA  50

seq1  GCCCTTCATAGAAGAATTTGACTTCTCAGACAGCTCA-GCCTGGAAGGGA  96
      |||||||  ||    ||| |||||| ||||||||||| |||||||| |||
seq2  GCCCTTCTGAG----ATTGGACTTCCCAGACAGCTCAGGCCTGGAA-GGA  95

seq1  ACTTGGGAGCCAGCCATGGTGGCAAGTGTCTTTAATTCCAGCAGTGGAGG  146
      |||||| ||||||||||||||||||  |||||| ||||||||||||||||
seq2  ACTTGGAAGCCAGCCATGGTGGCAAAGGTCTTT-ATTCCAGCAGTGGAGG  144

seq1  AGGACTCTAATGTCACCAACACTGGAGGAGAAGAGACAAAAAGCCGCGGT  196
      ||||||||||||||||||||||| || |||||||||||||||||||||||
seq2  AGGACTCTAATGTCACCAACACT-GAAGAGAAGAGACAAAAAGCCGCGGT  193

seq1  CAGCAGGCCTCTCTTGCAGAGCCTCACCCTGAGCTGACTAGAC-GGATTT  245
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAGCAGGCCTCTCTTGCAGAGCCTCACCCTGAGCTGACTAGACGGGATTT  243

seq1  CCTGGG-AGGAGTG-AGCCTGGGTCCTGGGCTGGACTGATGGTGGTGACT  293
      |||||| ||||||| ||||||||||||||||| |||||||||||||||||
seq2  CCTGGGAAGGAGTGAAGCCTGGGTCCTGGGCTAGACTGATGGTGGTGACT  293

seq1  ACGGTGGACTGACTATGCAGACAGAGAAGGAAGCAGATGGACAGAG-AAC  342
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACGGTGGACTGACTATGCAGACAGAGAAGGAAGCAGATGGACAGAGAAAC  343

seq1  ATTGTGTATCTCCCTAGTGTGGCAGA-GGCAGGCAGATGTGAGTTCCAGG  391
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATTGTGTATCTCCCTAGTGTGGCAGAGGGCAGGCAGATGTGAGTTCCAGG  393

seq1  CCAGCCAGAGATATAGTGAAACAGTTTTAAAGGGGGCAGGGCTGCGCCTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAGAGATATAGTGAAACAGTTTTAAAGGGGGCAGGGCTGCGCCTG  443

seq1  GTGATGGTGGTGGCACATGCCTTTAATCCCAGCACTCTGGAGGCTGAGGC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGTGGTGGCACATGCCTTTAATCCCAGCACTCTGGAGGCTGAGGC  493

seq1  AAGCCGGCTCTCTGAGTTAGAGACTAACCTGGTCTACAGGGTGAGTTCCA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCGGCTCTCTGAGTTAGAGACTAACCTGGTCTACAGGGTGAGTTCCA  543

seq1  GGACAGCCTGGGCTACACAGAGAAACCCTGTTTAGAAAAATAAAGTGGCA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCCTGGGCTACACAGAGAAACCCTGTTTAGAAAAATAAAGTGGCA  593

seq1  GGGGCTAGAGAGATGGCTCAGTGGTTAAGAGCACTATCTGCTCTTCCAGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTAGAGAGATGGCTCAGTGGTTAAGAGCACTATCTGCTCTTCCAGA  643

seq1  GGTCCTGAGTTCAATTCCCAGCCACCACGTGGTGGCTCACAACCATCTGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGAGTTCAATTCCCAGCCACCACGTGGTGGCTCACAACCATCTGT  693

seq1  AATGGGGATCTGATGCCCTCTTCTGAAGACAGTGACAGTGTACACACATA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGATCTGATGCCCTCTTCTGAAGACAGTGACAGTGTACACACATA  743

seq1  CATGAAATAAATAAATAAATCTTAAAAAAAAAGAAAAGAACTTTAAAGCA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAATAAATAAATAAATCTTAAAAAAAAAGAAAAGAACTTTAAAGCA  793

seq1  GCAGAGGTGGGGTGGGAGGTAAGGCAGTGCCTCTGCCCTCTCCTGTTCCC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGTGGGGTGGGAGGTAAGGCAGTGCCTCTGCCCTCTCCTGTTCCC  843

seq1  CAGTGGGTGGCTCAGAAGCTACCAGGTCACCAGGGTCACAGGTCTCAAGA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGTGGCTCAGAAGCTACCAGGTCACCAGGGTCACAGGTCTCAAGA  893

seq1  CTTCTTCTGTCTACAACCTGACTGGCACAATGCTGTGCCTCCTTATAATG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTGTCTACAACCTGACTGGCACAATGCTGTGCCTCCTTATAATG  943

seq1  ACTCTGGCGAGGACCCAGAGAAAGTGGGTGGGGCCAGGTTATGGTGCAAG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGCGAGGACCCAGAGAAAGTGGGTGGGGCCAGGTTATGGTGCAAG  993

seq1  TCTGAAGATTCTAAAAGTACAGAGCCTTCTACTTCCGAGCCACGTCTTTA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGATTCTAAAAGTACAGAGCCTTCTACTTCCGAGCCACGTCTTTA  1043

seq1  GCCCGTCTCTGGTGTTCCACCCCCGCAAAGTGCTCTACCACCCAGCTACA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGTCTCTGGTGTTCCACCCCCGCAAAGTGCTCTACCACCCAGCTACA  1093

seq1  TCACTAACCTTTCTTGTCGTTCTAAGATAAGCTATTCAGGCTACCCTGGA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAACCTTTCTTGTCGTTCTAAGATAAGCTATTCAGGCTACCCTGGA  1143

seq1  ATTC  1145
      ||||
seq2  ATTC  1147