BAC Information

Click to search

BAC

Clone NameB6Ng01-107H21
Chromosome5 (Build37)
Map Location 81,356,036 - 81,502,313
singlet/doubletdoublet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107H21.bB6Ng01-107H21.g
ACCDH914949DH914950
length1,105855
definitionDH914949|Mus musculus domesticus DNA, BAC clone: B6Ng01-107H21, 5' end.DH914950|Mus musculus domesticus DNA, BAC clone: B6Ng01-107H21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,501,199 - 81,502,313)(81,356,036 - 81,356,661)
sequence
gaattctcatacaatcatgatgaggatgaccttgttttgtccacttgaga
gacgaaactgaaatcagattagtgttcatcacacacaggagtgatgacaa
tgactgtgagtctgggctaatctttccccaaggaactcaccaagtatacg
aggaaggaccgaggctactaaccaactgactatagcactgcccccaccct
gccccagctatctcacctcttgcttcatggtatttaatgagcaatagcct
taactaaaggaacacgccttccattctcttacttggtgtgtctttggaag
ttcaggttaatcatcttgactgttgcacagaatttcctgggaggtgctga
ttcagccagaaaacacattcccgtttgctctgggctttgcttccttcctg
catatgggatgcacaggaggtggctagcctaccagaagctactctatgat
actgatgggtaaagtcacagaaaacatgttaaagggaaaggggatggcag
ggataataatctctaaagatcatggtgacagcagagaaccacagtctgct
tactactgaacttccttttcaaaaggacagaaatgcactgccatgatgtt
taattccttaatatcttagcttttttggtaaattccatcagatacagtca
aatcttatgaatggatttttttaatttgtttgttttattgctgcctcaaa
tagacaaagcatcaaaatatccaatttatacctaataacaaacttcaccc
tatcttagccccaaagcaacatccttcatttccaggatgactgtgtgaac
ttgaagacacacatggagaacgtaactgctcagagtgagtagcgctgctt
gcatcgtatttaggcaaggtgagatgggcaggggaactcacgaaaaaata
gaaaagctgaggaagaatgaaattgccacagttagccgatgctaagctgc
atgctgggcacgtaccatacagcgaccgagaaattctacctatatttaca
cggtgacgataaaagaaaatgaggtggagctcgataacaagctctcttct
aagtagatttagaactattcatcccctcgctttcagctcagaagctgcta
gctga
gaattctgttcatattgataaagaagatctgacataaacagcctaagcac
agcaatgttgataaagcatatgtatgcaaagaaccacaatgtgcaatagc
accatagtttttataacattttaccttgggctggagagacagcacagagg
tcaagaataccaagtgctcttgcaaatgaccgaggttcaattctttatat
atatatattaggtattttcctcatttacatttctaatgctatccccaaag
tcccccataccctccccccccactcccctcccccccccactcccactttt
tggccctggcgttcccctgtactggggcatataaagtttgcacttccaat
gggcctctctttccagtgatggactaggacatcttttgatccatatgcag
ctagagtcaagagctctggggtactggttagttcataatgttgttccacc
tattaaaaaatggggctcatagctaaacaaagaattctcacctgaggaat
accgaatggctgagaagcacctgaaaaaaatgttcagcatccttaatcat
cagggaaatgtaaatcaaaacaaccctgagattccatctcacaccagtca
gaatggctaagataaaaaattcaggtgacagcagatgctggcaaggatgt
agagaaagaggagcactcctccattgttggtgggattgcaagctggtgca
accactctgaaaatcagtctggtggttcctcagaaaattggacatagtac
tacttggagtaacccgcaatacctctccaaggtcaattcttaatacccac
atggcattagtaaatatgtgtactcagcccgagaagattgaaatcttctt
ctggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_81501199_81502313
seq2: B6Ng01-107H21.b_45_1149 (reverse)

seq1  TCAGCTAAGCAGGCTTCTGGGCTGAAAGCGAGGGGATGAATAGTGTCTAA  50
      |||||| |||| ||||||| |||||||||||||||||||||||| |||||
seq2  TCAGCT-AGCA-GCTTCTGAGCTGAAAGCGAGGGGATGAATAGT-TCTAA  47

seq1  ATCTACTTTAGAAGAGAGCTTGTTTATCGAGCTCCACCTCATTTTCTTTT  100
      |||||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  ATCTAC-TTAGAAGAGAGCTTG-TTATCGAGCTCCACCTCATTTTCTTTT  95

seq1  ATCTGTCACCGTGTAAATAATAGGTAGAATTTCTCGGTTCGCTGTATGGT  150
      ||| |||||||||||||| |||||||||||||||||| ||||||||||||
seq2  ATC-GTCACCGTGTAAAT-ATAGGTAGAATTTCTCGG-TCGCTGTATGGT  142

seq1  ACGTGCCCAGCATGCAGCTTAGCATCGGCTAACTGTGGCAATTTTCATTC  200
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACGTGCCCAGCATGCAGCTTAGCATCGGCTAACTGTGGCAA-TTTCATTC  191

seq1  TTCCTCAGCTTTTCTATTTTTTTCCTGAGTTCCCCTGCCCATCTCACCTT  250
      |||||||||||||||| ||||||| |||||||||||||||||||||||||
seq2  TTCCTCAGCTTTTCTA-TTTTTTCGTGAGTTCCCCTGCCCATCTCACCTT  240

seq1  GCCTAAATACGATGCAAGCAGCGCTACTCACTCTGAGCAGTTACGTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAATACGATGCAAGCAGCGCTACTCACTCTGAGCAGTTACGTTCTC  290

seq1  CATGTGTGTCTTCAAGTTCACACAGTCATCCTGGAAATGAAGGATGTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTGTCTTCAAGTTCACACAGTCATCCTGGAAATGAAGGATGTTGC  340

seq1  TTTGGGGCTAAGATAGGGTGAAGTTTGTTATTAGGTATAAATTGGATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGCTAAGATAGGGTGAAGTTTGTTATTAGGTATAAATTGGATATT  390

seq1  TTGATGCTTTGTCTATTTGAGGCAGCAATAAAACAAACAAATTAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCTTTGTCTATTTGAGGCAGCAATAAAACAAACAAATTAAAAAAA  440

seq1  TCCATTCATAAGATTTGACTGTATCTGATGGAATTTACCAAAAAAGCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCATAAGATTTGACTGTATCTGATGGAATTTACCAAAAAAGCTAA  490

seq1  GATATTAAGGAATTAAACATCATGGCAGTGCATTTCTGTCCTTTTGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTAAGGAATTAAACATCATGGCAGTGCATTTCTGTCCTTTTGAAAA  540

seq1  GGAAGTTCAGTAGTAAGCAGACTGTGGTTCTCTGCTGTCACCATGATCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTCAGTAGTAAGCAGACTGTGGTTCTCTGCTGTCACCATGATCTT  590

seq1  TAGAGATTATTATCCCTGCCATCCCCTTTCCCTTTAACATGTTTTCTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATTATTATCCCTGCCATCCCCTTTCCCTTTAACATGTTTTCTGTG  640

seq1  ACTTTACCCATCAGTATCATAGAGTAGCTTCTGGTAGGCTAGCCACCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACCCATCAGTATCATAGAGTAGCTTCTGGTAGGCTAGCCACCTCC  690

seq1  TGTGCATCCCATATGCAGGAAGGAAGCAAAGCCCAGAGCAAACGGGAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATCCCATATGCAGGAAGGAAGCAAAGCCCAGAGCAAACGGGAATG  740

seq1  TGTTTTCTGGCTGAATCAGCACCTCCCAGGAAATTCTGTGCAACAGTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTGGCTGAATCAGCACCTCCCAGGAAATTCTGTGCAACAGTCAA  790

seq1  GATGATTAACCTGAACTTCCAAAGACACACCAAGTAAGAGAATGGAAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTAACCTGAACTTCCAAAGACACACCAAGTAAGAGAATGGAAGGC  840

seq1  GTGTTCCTTTAGTTAAGGCTATTGCTCATTAAATACCATGAAGCAAGAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCTTTAGTTAAGGCTATTGCTCATTAAATACCATGAAGCAAGAGG  890

seq1  TGAGATAGCTGGGGCAGGGTGGGGGCAGTGCTATAGTCAGTTGGTTAGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATAGCTGGGGCAGGGTGGGGGCAGTGCTATAGTCAGTTGGTTAGTA  940

seq1  GCCTCGGTCCTTCCTCGTATACTTGGTGAGTTCCTTGGGGAAAGATTAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGGTCCTTCCTCGTATACTTGGTGAGTTCCTTGGGGAAAGATTAGC  990

seq1  CCAGACTCACAGTCATTGTCATCACTCCTGTGTGTGATGAACACTAATCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTCACAGTCATTGTCATCACTCCTGTGTGTGATGAACACTAATCT  1040

seq1  GATTTCAGTTTCGTCTCTCAAGTGGACAAAACAAGGTCATCCTCATCATG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAGTTTCGTCTCTCAAGTGGACAAAACAAGGTCATCCTCATCATG  1090

seq1  ATTGTATGAGAATTC  1115
      |||||||||||||||
seq2  ATTGTATGAGAATTC  1105

seq1: chr5_81356036_81356661
seq2: B6Ng01-107H21.g_67_692

seq1  GAATTCTGTTCATATTGATAAAGAAGATCTGACATAAACAGCCTAAGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTCATATTGATAAAGAAGATCTGACATAAACAGCCTAAGCAC  50

seq1  AGCAATGTTGATAAAGCATATGTATGCAAAGAACCACAATGTGCAATAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGTTGATAAAGCATATGTATGCAAAGAACCACAATGTGCAATAGC  100

seq1  ACCATAGTTTTTATAACATTTTACCTTGGGCTGGAGAGACAGCACAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGTTTTTATAACATTTTACCTTGGGCTGGAGAGACAGCACAGAGG  150

seq1  TCAAGAATACCAAGTGCTCTTGCAAATGACCGAGGTTCAATTCTTTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAATACCAAGTGCTCTTGCAAATGACCGAGGTTCAATTCTTTATAT  200

seq1  ATATATATTAGGTATTTTCCTCATTTACATTTCTAATGCTATCCCCAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATTAGGTATTTTCCTCATTTACATTTCTAATGCTATCCCCAAAG  250

seq1  TCCCCCATACCCTCCCCCCCCACTCCCCTCCCCCCCCCACTCCCACTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCATACCCTCCCCCCCCACTCCCCTCCCCCCCCCACTCCCACTTTT  300

seq1  TGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCACTTCCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCACTTCCAAT  350

seq1  GGGCCTCTCTTTCCAGTGATGGACTAGGACATCTTTTGATCCATATGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCTCTTTCCAGTGATGGACTAGGACATCTTTTGATCCATATGCAG  400

seq1  CTAGAGTCAAGAGCTCTGGGGTACTGGTTAGTTCATAATGTTGTTCCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTCAAGAGCTCTGGGGTACTGGTTAGTTCATAATGTTGTTCCACC  450

seq1  TATTAAAAAATGGGGCTCATAGCTAAACAAAGAATTCTCACCTGAGGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAAAATGGGGCTCATAGCTAAACAAAGAATTCTCACCTGAGGAAT  500

seq1  ACCGAATGGCTGAGAAGCACCTGAAAAAAATGTTCAGCATCCTTAATCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAATGGCTGAGAAGCACCTGAAAAAAATGTTCAGCATCCTTAATCAT  550

seq1  CAGGGAAATGTAAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAATGTAAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCA  600

seq1  GAATGGCTAAGATAAAAAATTCAGGT  626
      ||||||||||||||||||||||||||
seq2  GAATGGCTAAGATAAAAAATTCAGGT  626