BAC Information

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BAC

Clone NameB6Ng01-108F09
Chromosome5 (Build37)
Map Location 123,276,343 - 123,434,460
singlet/doubletdoublet
Overlap geneRnf34, Fbxl10
Upstream geneSh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5
Downstream geneLOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108F09.bB6Ng01-108F09.g
ACCDH915547DH915548
length5091,095
definitionDH915547|Mus musculus domesticus DNA, BAC clone: B6Ng01-108F09, 5' end.DH915548|Mus musculus domesticus DNA, BAC clone: B6Ng01-108F09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,276,343 - 123,276,857)(123,433,351 - 123,434,460)
sequence
cttctatcttctagggttgtgtaccccctgtgtgtgagggaaggggtact
catcaaatccactgtccccctgcctccactcctaaagcctgggattttgg
gaataaaggccctaaatggagggtcacggtgattgaaacaactggggttg
gagagatagctcggcagttaagagcactggatgcctcccagttacccata
tggtcggtggcttacaatcatgtaacaccagttccaagggatctgacacc
ttcctttagcctccatggcaccaggcaaacacatggttcatagacaaata
ttcaagcaaacacattcataaacacaaatatttatttagttatttacttt
gtgtgtttgcttgcttggagacagggtttctctgtgtagccctggctgtc
ctggaactcactttgtagaccaggctggcctcgaactcaaaaatcctcct
gcctctgcctcccaactgctgggattaaaggcatgcacccccagctgact
aaaataaat
gaattcaccccttcttcctccatctccctccctatcacaactcccagctt
gggttggcttctcctgcctttcttatgccaccacttagcatttccaagag
aggaggactttgcctaaaatctaggaacagctccttctctctcggttcaa
ggcccactggagaagaaaagctgctctttcgggaatttgggaatcctagg
gcatttaagcagtgatgacctcccccacccacatctagtctatcccggtc
actttaagcagtgatggatctcctgctgctgctttctggtctattctggt
cccacacagcaacttcctgctgagcattgcttgaagcgtgggttgtgaag
ggactgaccatcttctgcgcctagactagggtaccaggatgcatgttttc
tgaacatattcctagtgtgggggaaatgggtctctttctgtgatgggtgt
gtgtttcttctccttatacccccttgactctgtctatcttctattctgga
agagaactgcagagctgcccagggttctgggttggggagagatggaggca
agctgaagaacaggtcccactccttggtcagggataagaaaggggtttta
ggctgcctcccactctagcctctactgctaggcttgctcaggtacttcct
accagggttatgagatgttcagcatcttcctcgctggctggcctggagtt
tgctgtgtagaccaggctggccttgaactcatagagatcttcctgcctct
ttctgagattaaaggcatgtgttacctgcctttcagcatctctggtttct
gtcttgtttttatgttttgagagcccaggctagcctcagacttaactctg
tggcggaggatgactttgaacacctgctcctcctgccttcccttcccaag
agctgggatcataggcttatgcactgtccattaagcgggacatgcccttg
tctggctctgtctgtactcatttatttatttatttatttatttattaatt
attatttaatcagaaaggttctctgtatagccctggctgtctgacctcac
ttggagaccagctggcctgaactcaaatcgcctgccctggcctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_123276343_123276857
seq2: B6Ng01-108F09.b_47_561

seq1  GAATTCCTTCTATCTTCTAGGGTTGTGTACCCCCTGTGTGTGAGGGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTATCTTCTAGGGTTGTGTACCCCCTGTGTGTGAGGGAAGG  50

seq1  GGTACTCATCAAATCCACTGTCCCCCTGCCTCCACTCCTAAAGCCTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTCATCAAATCCACTGTCCCCCTGCCTCCACTCCTAAAGCCTGGGA  100

seq1  TTTTGGGAATAAAGGCCCTAAATGGAGGGTCACGGTGATTGAAACAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGAATAAAGGCCCTAAATGGAGGGTCACGGTGATTGAAACAACTG  150

seq1  GGGTTGGAGAGATAGCTCGGCAGTTAAGAGCACTGGATGCCTCCCAGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGGAGAGATAGCTCGGCAGTTAAGAGCACTGGATGCCTCCCAGTTA  200

seq1  CCCATATGGTCGGTGGCTTACAATCATGTAACACCAGTTCCAAGGGATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATGGTCGGTGGCTTACAATCATGTAACACCAGTTCCAAGGGATCT  250

seq1  GACACCTTCCTTTAGCCTCCATGGCACCAGGCAAACACATGGTTCATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTTCCTTTAGCCTCCATGGCACCAGGCAAACACATGGTTCATAGA  300

seq1  CAAATATTCAAGCAAACACATTCATAAACACAAATATTTATTTAGTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTCAAGCAAACACATTCATAAACACAAATATTTATTTAGTTATT  350

seq1  TACTTTGTGTGTTTGCTTGCTTGGAGACAGGGTTTCTCTGTGTAGCCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTGTGTTTGCTTGCTTGGAGACAGGGTTTCTCTGTGTAGCCCTG  400

seq1  GCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAAAAAT  450

seq1  CCTCCTGCCTCTGCCTCCCAACTGCTGGGATTAAAGGCATGCACCCCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGCCTCTGCCTCCCAACTGCTGGGATTAAAGGCATGCACCCCCAG  500

seq1  CTGACTAAAATAAAT  515
      |||||||||||||||
seq2  CTGACTAAAATAAAT  515

seq1: chr5_123433351_123434460
seq2: B6Ng01-108F09.g_66_1160 (reverse)

seq1  GGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAA  50
      ||||||   ||||||| ||||  ||||||| ||||||| ||||||| | |
seq2  GGAGGCCAGGGCAGGC-GATT--TGAGTTC-AGGCCAG-CTGGTCT-CCA  44

seq1  AGTGAGTTCTAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGAATA  100
      |||||| ||   |||||||||||||||||||||||  ||| || ||| ||
seq2  AGTGAGGTC--AGACAGCCAGGGCTATACAGAGAA--CCTTTC-TGATTA  89

seq1  AATAAATAAATAAATAAATAAATAAATAAATAAATAAATGAGTACAGACA  150
      |||||   ||| ||||||||||||||||||||||||||||||||||||||
seq2  AATAA--TAATTAATAAATAAATAAATAAATAAATAAATGAGTACAGACA  137

seq1  GAGCCAGACAAGGGCATGTCCCGCCTTAATGGACAGTGGCATAAGCCTAT  200
      ||||||||||||||||||||||| ||||||||||||| ||||||||||||
seq2  GAGCCAGACAAGGGCATGTCCCG-CTTAATGGACAGT-GCATAAGCCTAT  185

seq1  GATCCCAGCTCTTGGGAAGGGAAGGCAGGAGGAGCAGGTGTTCAAAGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCAGCTCTTGGGAAGGGAAGGCAGGAGGAGCAGGTGTTCAAAGTCA  235

seq1  TCCTCCGCCACAGAGTTAAGTCTGAGGCTAGCCTGGGCTCTCAAAACATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCGCCACAGAGTTAAGTCTGAGGCTAGCCTGGGCTCTCAAAACATA  285

seq1  AAAACAAGACAGAAACCAGAGATGCTGAAAGGCAGGTAACACATGCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGACAGAAACCAGAGATGCTGAAAGGCAGGTAACACATGCCTTT  335

seq1  AATCTCAGAAAGAGGCAGGAAGATCTCTATGAGTTCAAGGCCAGCCTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAGAAAGAGGCAGGAAGATCTCTATGAGTTCAAGGCCAGCCTGGT  385

seq1  CTACACAGCAAACTCCAGGCCAGCCAGCGAGGAAGATGCTGAACATCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAGCAAACTCCAGGCCAGCCAGCGAGGAAGATGCTGAACATCTCA  435

seq1  TAACCCTGGTAGGAAGTACCTGAGCAAGCCTAGCAGTAGAGGCTAGAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTGGTAGGAAGTACCTGAGCAAGCCTAGCAGTAGAGGCTAGAGTG  485

seq1  GGAGGCAGCCTAAAACCCCTTTCTTATCCCTGACCAAGGAGTGGGACCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGCCTAAAACCCCTTTCTTATCCCTGACCAAGGAGTGGGACCTG  535

seq1  TTCTTCAGCTTGCCTCCATCTCTCCCCAACCCAGAACCCTGGGCAGCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAGCTTGCCTCCATCTCTCCCCAACCCAGAACCCTGGGCAGCTCT  585

seq1  GCAGTTCTCTTCCAGAATAGAAGATAGACAGAGTCAAGGGGGTATAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCTCTTCCAGAATAGAAGATAGACAGAGTCAAGGGGGTATAAGGA  635

seq1  GAAGAAACACACACCCATCACAGAAAGAGACCCATTTCCCCCACACTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAACACACACCCATCACAGAAAGAGACCCATTTCCCCCACACTAGG  685

seq1  AATATGTTCAGAAAACATGCATCCTGGTACCCTAGTCTAGGCGCAGAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTCAGAAAACATGCATCCTGGTACCCTAGTCTAGGCGCAGAAGA  735

seq1  TGGTCAGTCCCTTCACAACCCACGCTTCAAGCAATGCTCAGCAGGAAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGTCCCTTCACAACCCACGCTTCAAGCAATGCTCAGCAGGAAGTT  785

seq1  GCTGTGTGGGACCAGAATAGACCAGAAAGCAGCAGCAGGAGATCCATCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTGGGACCAGAATAGACCAGAAAGCAGCAGCAGGAGATCCATCAC  835

seq1  TGCTTAAAGTGACCGGGATAGACTAGATGTGGGTGGGGGAGGTCATCACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAAAGTGACCGGGATAGACTAGATGTGGGTGGGGGAGGTCATCACT  885

seq1  GCTTAAATGCCCTAGGATTCCCAAATTCCCGAAAGAGCAGCTTTTCTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAATGCCCTAGGATTCCCAAATTCCCGAAAGAGCAGCTTTTCTTCT  935

seq1  CCAGTGGGCCTTGAACCGAGAGAGAAGGAGCTGTTCCTAGATTTTAGGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGGCCTTGAACCGAGAGAGAAGGAGCTGTTCCTAGATTTTAGGCA  985

seq1  AAGTCCTCCTCTCTTGGAAATGCTAAGTGGTGGCATAAGAAAGGCAGGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTCCTCTCTTGGAAATGCTAAGTGGTGGCATAAGAAAGGCAGGAG  1035

seq1  AAGCCAACCCAAGCTGGGAGTTGTGATAGGGAGGGAGATGGAGGAAGAAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAACCCAAGCTGGGAGTTGTGATAGGGAGGGAGATGGAGGAAGAAG  1085

seq1  GGGTGAATTC  1110
      ||||||||||
seq2  GGGTGAATTC  1095