BAC Information

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BAC

Clone NameB6Ng01-108O12
Chromosome5 (Build37)
Map Location 85,223,718 - 85,392,409
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC231368, Epha5, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108O12.bB6Ng01-108O12.g
ACCDH915967DH915968
length1,1461,063
definitionDH915967|Mus musculus domesticus DNA, BAC clone: B6Ng01-108O12, 5' end.DH915968|Mus musculus domesticus DNA, BAC clone: B6Ng01-108O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,223,718 - 85,224,885)(85,391,315 - 85,392,409)
sequence
gaattccaggtgtgctcacaccatatttattaaattctaagcaaaacatc
caaaaacttcacttgcttctgaaaggattgaaggccgacaagttatatcc
ctgtcttattctactcgggatcctgaaacagagtgaataaacactattgc
ttagggcagccataggttatgtatcatggtttggagtctgagtacacaat
ggagtctggcatgtagatgtaagcaggaagtgatcatgctcacctctctt
ttttccattaggctcctcttacaaggccactgtgatagaatttcaacttt
caaattttgtgacaacacacatttatcagaacataaaggccccatatccc
acagataattatgcagaataaggatcaaaggcagaaatgaaagaaatgga
ataaaaaaaaaaaaaccaccaccaataaaaacaaaaagcaaaagaagcca
aataaaagtatatatagacaatgaattggaaatctagcatcattacatag
gttagttttttttttcaagacagggtttctctgtatagtcctggctgtcc
tggaactcactttgtagactaggctggtctagaactcagaaatctgcctg
cctctggctcctgagtgctgggattaaaggcatgggccaccatgcccagg
aaggttaaaatttttaatatccttagtagtaaaatatgcagtagtaaata
ataaatgccctttacatatacagtttgttctaatttggttccaagattct
agttcataccaaaataatcccaattatttttgccgttctcaggtaaaatt
agtgtttctaagattactgaagtctaggattcaaagcttttcttctcttg
ccttattctaggttcaaaccaagggacatggagaatataacctgaaatat
aagatgattcaagaacttttatcctaatggaagtaaaatacaagctatat
gtttgtatagctcctaagtctttgacttaaatatcactgatttcactatg
aacccaatatcccctttcagtgctgtatttctctgtatactctgtatctg
catctcaagtactatacaaaaatcaccccacacatctctcataataaatc
tgcatgtactgcctctgcctcccgagtctggataagcgtgagccac
gaattctatatctgaaaaaaaaatctgtgcaattgtggaagggtagatta
agtgttcaaacctactgatggctgctagcagtttagatcagttagaagaa
agtgacagaaactcagaggtcctccagggatctaaaggagaaaggacatt
tgaacattataaaaccatgatcaggagccaaattaaatatctgactattg
aagcttccattggtatatggttagggctacagtgatgttttgaatcttac
atcaagagtgtaattggaagaacttcagtgactgattcacaagaatctaa
tcatacaaatccaagctggagtgaaacatttaattttctgagttatcaga
ctaaatttatttgaactacagagagacatttttaaaaatgagcaatatta
atgtggaactattttcctttttgtttatcttatgaaataatatttgtagt
atgaatatgcagggaagaaacaataacagatatctttgttttgtgactga
aaaaatccttagatatttccatggaagaggaacacctggtttttggttta
aaaagagaaattttatgtaaattattttgtacactcaccatggaagagct
gcttaatttcccccaaatactcattacaatgaattatcattgattttgta
tttatttcttttttatttcttttttctttattcatattttaaatattatc
acctttcctagaaaacccctccaaaatccccatatcccttctctcctccc
cctttcacctgcctatcaacccacccactcctacttcctggcactggcat
tcccctatactggggcatagaaccttcacaggaccaagggcctctcctcc
cattgatgaccaactaggtcatcctctgctacaaatgcacctagagccat
gagtcccaccatgtgtgtgtgtgtttgctttgtgtgtggtgtgttttgtt
ttgtttgttgctttgtgtgtgtgtcctctatgggctgcaacccttcagct
cctgatactttcttagctcctcatggagacctgtgcttgtcatggatgga
attgagattcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_85223718_85224885
seq2: B6Ng01-108O12.b_47_1192

seq1  GAATTCCAGGTGTGCTCACACCATATTTATTAAATTCTAAGCAAAACATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTGTGCTCACACCATATTTATTAAATTCTAAGCAAAACATC  50

seq1  CAAAAACTTCACTTGCTTCTGAAAGGATTGAAGGCCGACAAGTTATATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACTTCACTTGCTTCTGAAAGGATTGAAGGCCGACAAGTTATATCC  100

seq1  CTGTCTTATTCTACTCGGGATCCTGAAACAGAGTGAATAAACACTATTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTATTCTACTCGGGATCCTGAAACAGAGTGAATAAACACTATTGC  150

seq1  TTAGGGCAGCCATAGGTTATGTATCATGGTTTGGAGTCTGAGTACACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGCAGCCATAGGTTATGTATCATGGTTTGGAGTCTGAGTACACAAT  200

seq1  GGAGTCTGGCATGTAGATGTAAGCAGGAAGTGATCATGCTCACCTCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTGGCATGTAGATGTAAGCAGGAAGTGATCATGCTCACCTCTCTT  250

seq1  TTTTCCATTAGGCTCCTCTTACAAGGCCACTGTGATAGAATTTCAACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATTAGGCTCCTCTTACAAGGCCACTGTGATAGAATTTCAACTTT  300

seq1  CAAATTTTGTGACAACACACATTTATCAGAACATAAAGGCCCCATATCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTTGTGACAACACACATTTATCAGAACATAAAGGCCCCATATCCC  350

seq1  ACAGATAATTATGCAGAATAAGGATCAAAGGCAGAAATGAAAGAAATGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAATTATGCAGAATAAGGATCAAAGGCAGAAATGAAAGAAATGGA  400

seq1  ATAAAAAAAAAAAAACCACCACCAATAAAAACAAAAAGCAAAAGAAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAAAAAAAACCACCACCAATAAAAACAAAAAGCAAAAGAAGCCA  450

seq1  AATAAAAGTATATATAGACAATGAATTGGAAATCTAGCATCATTACATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGTATATATAGACAATGAATTGGAAATCTAGCATCATTACATAG  500

seq1  GTTAGTTTTTTTTTTCAAGACAGGGTTTCTCTGTATAGTCCTGGCTGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTTTTTTTTTCAAGACAGGGTTTCTCTGTATAGTCCTGGCTGTCC  550

seq1  TGGAACTCACTTTGTAGACTAGGCTGGTCTAGAACTCAGAAATCTGCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCACTTTGTAGACTAGGCTGGTCTAGAACTCAGAAATCTGCCTG  600

seq1  CCTCTGGCTCCTGAGTGCTGGGATTAAAGGCATGGGCCACCATGCCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGCTCCTGAGTGCTGGGATTAAAGGCATGGGCCACCATGCCCAGG  650

seq1  AAGGTTAAAATTTTTAATATCCTTAGTAGTAAAATATGCAGTAGTAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTAAAATTTTTAATATCCTTAGTAGTAAAATATGCAGTAGTAAATA  700

seq1  ATAAATGCCCTTTACATATACAGTTTGTTCTAATTTGGTTCCAAGATTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGCCCTTTACATATACAGTTTGTTCTAATTTGGTTCCAAGATTCT  750

seq1  AGTTCATACCAAAATAATCCCAATTATTTTTGCCGTTCTCAGGTAAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATACCAAAATAATCCCAATTATTTTTGCCGTTCTCAGGTAAAATT  800

seq1  AGTGTTTCTAAGATTACTGAAGTCTAGGATTCAAAGCTTTTCTTCTCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTCTAAGATTACTGAAGTCTAGGATTCAAAGCTTTTCTTCTCTTG  850

seq1  CCTTATTCTAGGTTCAAACCAAGGGACATGGAGAATATAACCTGAAATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTCTAGGTTCAAACCAAGGGACATGGAGAATATAACCTGAAATAT  900

seq1  AAGATGATTCAAGAACTTTTATCCTAATGGAAGTAAAATACAAGCTATTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAGATGATTCAAGAACTTTTATCCTAATGGAAGTAAAATACAAGCTA-TA  949

seq1  TGTTTTGTATTAGCTCCTAAGTCTTTGACTTAAATATCACTTGATTTTCA  1000
      || |||||| |||||||||||||||||||||||||||||| ||| |||||
seq2  TG-TTTGTA-TAGCTCCTAAGTCTTTGACTTAAATATCAC-TGA-TTTCA  995

seq1  CTATGAACCCAATATCCCCTTTCAGTGCTGTAATTTCTCTGTTATACTCT  1050
      ||||||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  CTATGAACCCAATATCCCCTTTCAGTGCTGT-ATTTCTCTG-TATACTCT  1043

seq1  GTTATCTGCCATCTCAAGTACTATTACAAAAATACACCCACACATCTCTC  1100
      | |||||| |||||||||||||| |||||||||   ||||||||||||||
seq2  G-TATCTG-CATCTCAAGTACTA-TACAAAAATCACCCCACACATCTCTC  1090

seq1  ATATAATATTCCTTGGCAAATGTACCTGCCTCTGCCTCCCGAGTGCTGGG  1150
        ||||||   ||  ||  ||||| ||||||||||||||||||| |||| 
seq2  --ATAATAAATCT--GC--ATGTA-CTGCCTCTGCCTCCCGAGT-CTGG-  1131

seq1  ATTAGAGGCGTGAGCCAC  1168
         | | |||||||||||
seq2  ---ATAAGCGTGAGCCAC  1146

seq1: chr5_85391315_85392409
seq2: B6Ng01-108O12.g_67_1129 (reverse)

seq1  CATGAATTCTCAAATACCATCCATTGGACAGAGCACAGGGTCTCCAATGG  50
      |||||| |||| ||| ||||||||  |||| |||||| ||||||||   |
seq2  CATGAA-TCTC-AATTCCATCCAT--GACA-AGCACA-GGTCTCCA--TG  42

seq1  AGGAGCTAAAGAAAGTATCCAAGGAGCTGAAGGGGTTTGCAGCCCCATAG  100
      ||||||| |||||||||||  |||||||||||||  |||||| |||||| 
seq2  AGGAGCT-AAGAAAGTATC--AGGAGCTGAAGGG--TTGCAG-CCCATA-  85

seq1  GAGGAACAACAACAACAACAAAAGCAAACAAAACAAAACAAAACAACAAC  150
      ||||    |||   |||   |||||||   ||||||||||||||    ||
seq2  GAGG----ACA--CACACACAAAGCAA--CAAACAAAACAAAAC----AC  123

seq1  AACAACAACAAAGCAAAACAACAACAACAACACATGGTGGGACTCATGGC  200
      | ||   ||||||||||      |||   |||||||||||||||||||||
seq2  ACCACACACAAAGCAAA-----CACACACACACATGGTGGGACTCATGGC  168

seq1  TCTAGGTGCATTTGTAGCAGAGGATGACCTAGTTGGTCATCAATGGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTGCATTTGTAGCAGAGGATGACCTAGTTGGTCATCAATGGGAGG  218

seq1  AGAGGCCCTTGGTCCTGTGAAGGTTCTATGCCCCAGTATAGGGGAATGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCCTTGGTCCTGTGAAGGTTCTATGCCCCAGTATAGGGGAATGCC  268

seq1  AGTGCCAGGAAGTAGGAGTGGGTGGGTTGATAGGCAGGTGAAAGGGGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCAGGAAGTAGGAGTGGGTGGGTTGATAGGCAGGTGAAAGGGGGAG  318

seq1  GAGAGAAGGGATATGGGGATTTTGGAGGGGTTTTCTAGGAAAGGTGATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAGGGATATGGGGATTTTGGAGGGGTTTTCTAGGAAAGGTGATAA  368

seq1  TATTTAAAATATGAATAAAGAAAAAAGAAATAAAAAAGAAATAAATACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAATATGAATAAAGAAAAAAGAAATAAAAAAGAAATAAATACAA  418

seq1  AATCAATGATAATTCATTGTAATGAGTATTTGGGGGAAATTAAGCAGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATGATAATTCATTGTAATGAGTATTTGGGGGAAATTAAGCAGCTC  468

seq1  TTCCATGGTGAGTGTACAAAATAATTTACATAAAATTTCTCTTTTTAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGGTGAGTGTACAAAATAATTTACATAAAATTTCTCTTTTTAAAC  518

seq1  CAAAAACCAGGTGTTCCTCTTCCATGGAAATATCTAAGGATTTTTTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACCAGGTGTTCCTCTTCCATGGAAATATCTAAGGATTTTTTCAGT  568

seq1  CACAAAACAAAGATATCTGTTATTGTTTCTTCCCTGCATATTCATACTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAACAAAGATATCTGTTATTGTTTCTTCCCTGCATATTCATACTAC  618

seq1  AAATATTATTTCATAAGATAAACAAAAAGGAAAATAGTTCCACATTAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTATTTCATAAGATAAACAAAAAGGAAAATAGTTCCACATTAATA  668

seq1  TTGCTCATTTTTAAAAATGTCTCTCTGTAGTTCAAATAAATTTAGTCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCATTTTTAAAAATGTCTCTCTGTAGTTCAAATAAATTTAGTCTGA  718

seq1  TAACTCAGAAAATTAAATGTTTCACTCCAGCTTGGATTTGTATGATTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCAGAAAATTAAATGTTTCACTCCAGCTTGGATTTGTATGATTAGA  768

seq1  TTCTTGTGAATCAGTCACTGAAGTTCTTCCAATTACACTCTTGATGTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTGAATCAGTCACTGAAGTTCTTCCAATTACACTCTTGATGTAAG  818

seq1  ATTCAAAACATCACTGTAGCCCTAACCATATACCAATGGAAGCTTCAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAACATCACTGTAGCCCTAACCATATACCAATGGAAGCTTCAATA  868

seq1  GTCAGATATTTAATTTGGCTCCTGATCATGGTTTTATAATGTTCAAATGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATATTTAATTTGGCTCCTGATCATGGTTTTATAATGTTCAAATGT  918

seq1  CCTTTCTCCTTTAGATCCCTGGAGGACCTCTGAGTTTCTGTCACTTTCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCCTTTAGATCCCTGGAGGACCTCTGAGTTTCTGTCACTTTCTT  968

seq1  CTAACTGATCTAAACTGCTAGCAGCCATCAGTAGGTTTGAACACTTAATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGATCTAAACTGCTAGCAGCCATCAGTAGGTTTGAACACTTAATC  1018

seq1  TACCCTTCCACAATTGCACAGATTTTTTTTTCAGATATAGAATTC  1095
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTTCCACAATTGCACAGATTTTTTTTTCAGATATAGAATTC  1063