BAC Information

Click to search

BAC

Clone NameB6Ng01-109A22
Chromosome5 (Build37)
Map Location 14,933,589 - 15,019,566
singlet/doubletdoublet
Overlap geneLOC624245, Speer8-ps1
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219
Downstream geneSpeer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109A22.bB6Ng01-109A22.g
ACCDH916074DH916075
length1,0911,128
definitionDH916074|Mus musculus domesticus DNA, BAC clone: B6Ng01-109A22, 5' end.DH916075|Mus musculus domesticus DNA, BAC clone: B6Ng01-109A22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,018,470 - 15,019,566)(14,933,589 - 14,934,726)
sequence
gaattcaatgaacatttatcatgatttcaattttattgttcagaattaat
gttcaaaaattaagtgattatctgatgttatttttatgaaacatgttggc
atttgttgacaatgatgaattgaaccatctctcttattaaatttcaacaa
ttcaaatgcaatttttatcacttattaacttatttgtctagtagcactaa
ccagctaaaattaattttagaaatcttttttacatgaaataataaataaa
ttgataacaagctgcatagcacatttttgtttgcctttaatgaaactctt
ctgaacacactctgacatttcctatctaattctcatccgacaggtattca
tttatcactctattaacatgcacatcagtaatggtgtcttaatctatctc
aacgtgctatcaattaggagaatatccttgaacatagggtggggagattt
gcaaatacacaattttttgaaacttgagatctctaatagtcctttgagta
atgtaatttctaacaatttttctatttaaaatgcaccttctgaaaataaa
actctgaaagattaagtataatattaacattaaactcataggtcacgacg
gtggttcatactatgacataaggcttacaaatgcttctgtatgtatgtac
ttattcatttacttacttgtttattttctctaacatcctgctgcactggg
attcctgatgattggatttcagttaccagcatgcagagatcctaaagtta
atgacatattaaacatttagctttactttctattctgaaaattcagttaa
tgctattatttgaactttattgatctttgagacaaatctcactatgtttc
tcacgctggtctcaaatttgtaatattcctggctcaggtgctgggattat
agacaagtagtagtgtggtggcttgaatatgcttggcccaggatggcact
gttaggaggtatggagtaggtatggcctgttggaggaagaagtctgtcat
gctttgaagacctcctcctagctttctgggagccaagtctcctccacttg
gccttccagatgagatgttagaattccccagctccttcctg
gaattctaggtctgcagcaggggacagaacacctgaataaggaagatggt
ctcaagagtcactacttgcaaatcaatttttattcataagaaatagaatt
tttaaaaaataggttttaaaagttcaattaatatagagataaaggcaaaa
acaaacaatgaaacacaagaacaagaacatataacttctaaataacataa
caataactcaaagaacaaaaataaaaacttaaaccaaaactctaaaggaa
aattattgttcagctgcttttgctttctgcacttttagcagcacagccct
ccagcctgctgctcctcttggacactaggtatcagtgcagccgcctcagt
tctctgccaagagacgttgtctgaagagaaaagggaacaacgccctgaat
cagccatggcttcctagtaaaggcctattcaccctaagaaaatgaattat
atggaagaagattcatccgaggaagattgtgggtgctggagatggtgctc
agcaggggcctcctggcctggcaactcattctgcaggatgctgtcttctt
cagctgtggccaatcccagctctcttgcagtttctgagacctgggagagg
aaggcagttactaagacacaggagtggaggagacaggcatggcagctgtg
aggctactgcctcctaccacctcaactgtacttgacagtcaacattaata
ttttaactgaagttattgatgttaaatctaaagacagggcaaaatattca
acaacagtcacaaaaacatggactgacaaagatcaactcagcttctatca
gttccaaccaaaacatggcaaaggaagagagctcagtggattacaggaag
aaaggagaagggcacggacaccagatcaatgatatgagaagcactcattt
gacatttgtacttggctctaatccttccaaggtgcagacacatgggatgt
catagacctctgcctgtctctgtctaagaccagatctcactcaacctctg
catagcattccactatcatgaggacatgcagatgtgacattgttatttca
cctgtcaccctggtagtgggctgcagataaagcagagttgaaggtcattc
gccagtggtaacgtgttcctcaaagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15018470_15019566
seq2: B6Ng01-109A22.b_48_1138 (reverse)

seq1  CAGG-AGGAGCT-GAGAGTTCT-ACATCTTCATCT-GAAGGCCAGTTGGA  46
      |||| ||||||| | || |||| ||||| |||||| ||||||||  ||||
seq2  CAGGAAGGAGCTGGGGAATTCTAACATC-TCATCTGGAAGGCCAAGTGGA  49

seq1  GTAGAC-TGGCTTCCAGGAAGCTAGGAGGGAGGTC-TCAAATCATGACAG  94
      | |||| ||||| |||| ||||||||| ||||||| ||||| ||||||||
seq2  GGAGACTTGGCTCCCAGAAAGCTAGGA-GGAGGTCTTCAAAGCATGACAG  98

seq1  ACTTCCTTCCTCCAACAAGGCCATACCTACTCCATACCTCCTAACAGTGC  144
      |||| ||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACTT-CTTCCTCCAAC-AGGCCATACCTACTCCATACCTCCTAACAGTGC  146

seq1  CATCCTGGGCCAAGCATATTCAAGCCACCACACTACTACTTGTCTATAAT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGGGCCAAGCATATTCAAGCCACCACACTACTACTTGTCTATAAT  196

seq1  CCCAGGAGCCAGCACCCTGAGCCAGGAATATTACAAATTTGAGACCAGCC  244
      ||||| |        |||||||||||||||||||||||||||||||||| 
seq2  CCCAGCA--------CCTGAGCCAGGAATATTACAAATTTGAGACCAGCG  238

seq1  TGAGAAACATAATGAGATTTGTCTCAAAGATCAATAAAGTTCAAATAATA  294
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAACATAGTGAGATTTGTCTCAAAGATCAATAAAGTTCAAATAATA  288

seq1  GCATTAACTGAATTTTCAGAATAGAAAGTAAAGCTAAATGTTTAATATGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAACTGAATTTTCAGAATAGAAAGTAAAGCTAAATGTTTAATATGT  338

seq1  CATTAACTTTAGGATCTCTGCATGCTGGTAACTGAAATCCAATCATCAGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACTTTAGGATCTCTGCATGCTGGTAACTGAAATCCAATCATCAGG  388

seq1  AATCCCAGTGCAGCAGGATGTTAGAGAAAATAAACAAGTAAGTAAATGAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGTGCAGCAGGATGTTAGAGAAAATAAACAAGTAAGTAAATGAA  438

seq1  TAAGTACATACATACAGAAGCATTTGTAAGCCTTATGTCATAGTATGAAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACATACATACAGAAGCATTTGTAAGCCTTATGTCATAGTATGAAC  488

seq1  CACCGTCGTGACCTATGAGTTTAATGTTAATATTATACTTAATCTTTCAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTCGTGACCTATGAGTTTAATGTTAATATTATACTTAATCTTTCAG  538

seq1  AGTTTTATTTTCAGAAGGTGCATTTTAAATAGAAAAATTGTTAGAAATTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATTTTCAGAAGGTGCATTTTAAATAGAAAAATTGTTAGAAATTA  588

seq1  CATTACTCAAAGGACTATTAGAGATCTCAAGTTACAAAAAATTGTGTATT  644
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CATTACTCAAAGGACTATTAGAGATCTCAAGTTTCAAAAAATTGTGTATT  638

seq1  AGCAAATCTCCCCACCCTATGTTCAAGGATATTCTCCTAATTGATAGCAC  694
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATCTCCCCACCCTATGTTCAAGGATATTCTCCTAATTGATAGCAC  688

seq1  GGTGAGATAGATTAAGATACCATCACTGATGTGCATGTTAATAGAGTGAT  744
      | ||||||||||||||| ||||| ||||||||||||||||||||||||||
seq2  GTTGAGATAGATTAAGACACCATTACTGATGTGCATGTTAATAGAGTGAT  738

seq1  AAATGAATACCTGTGGGATGAGAATTAGATAGGAAATGTCAGAGTGTGTT  794
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAATGAATACCTGTCGGATGAGAATTAGATAGGAAATGTCAGAGTGTGTT  788

seq1  CAGAAGAGTTTCATTAAAGGCAAACAAAAATGTGCTATGAAGCTTGTTAT  844
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAGAAGAGTTTCATTAAAGGCAAACAAAAATGTGCTATGCAGCTTGTTAT  838

seq1  CAATTTATTTATTATTTCATGTAAAAAAGATTTCTAAAATTAATTTTAGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTATTTATTATTTCATGTAAAAAAGATTTCTAAAATTAATTTTAGC  888

seq1  TGGTTAGTGCTACTAGACAAATAAGTTAATAAGTGATAAAACTTGCATTT  944
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGGTTAGTGCTACTAGACAAATAAGTTAATAAGTGATAAAAATTGCATTT  938

seq1  GAATTGTTGAAATTTAATAAGAGAGATGGTTCAATTCATCATTGTCAACA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTTGAAATTTAATAAGAGAGATGGTTCAATTCATCATTGTCAACA  988

seq1  AATGCCAACATGTTTCATAAAAATAACATCAGATAATCACTTAATTTTTG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAACATGTTTCATAAAAATAACATCAGATAATCACTTAATTTTTG  1038

seq1  AACATTAATTCTGAACAATAAAATTGAAATCATGATAAATGTTCATTGAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAATTCTGAACAATAAAATTGAAATCATGATAAATGTTCATTGAA  1088

seq1  TTC  1097
      |||
seq2  TTC  1091

seq1: chr5_14933589_14934726
seq2: B6Ng01-109A22.g_68_1193

seq1  ATTCTAGGTCTGCAGCAGGAGACAGAACACCTGAATAAGGAAGATGGTCT  50
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATTCTAGGTCTGCAGCAGGGGACAGAACACCTGAATAAGGAAGATGGTCT  50

seq1  CAAGAGTCACTACTTGCAAATCAATTTTTATTCATAAGAAATAGAATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTCACTACTTGCAAATCAATTTTTATTCATAAGAAATAGAATTTT  100

seq1  TAAAAAATAGGTTTTAAAAGTTCAATTAATATAGAGATAAAGGCAAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATAGGTTTTAAAAGTTCAATTAATATAGAGATAAAGGCAAAAAC  150

seq1  AAACAATGAAATAAAAGAACAAGAACATATAACTTCTAAATAACGTAACA  200
      ||||||||||| | |||||||||||||||||||||||||||||| |||||
seq2  AAACAATGAAACACAAGAACAAGAACATATAACTTCTAAATAACATAACA  200

seq1  ATAACTCAAAGATCAAAAATAAAAACTTAAACCAAAACTCTAAAGGAAAA  250
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATAACTCAAAGAACAAAAATAAAAACTTAAACCAAAACTCTAAAGGAAAA  250

seq1  TTATTGTTCAGCTGCTTTCGCTTTCTGCACTTTTAGCAGCACAGCCCTCC  300
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTATTGTTCAGCTGCTTTTGCTTTCTGCACTTTTAGCAGCACAGCCCTCC  300

seq1  AGCCTGCTGCTCCTCTTGGACACTAGGTATCAGTGCAGCCGCCTCAGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCTGCTCCTCTTGGACACTAGGTATCAGTGCAGCCGCCTCAGTTC  350

seq1  TCTGCCAAGAGACGTTGTCTGAAGAGAAAAGGGAACAACGCCCTGAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAAGAGACGTTGTCTGAAGAGAAAAGGGAACAACGCCCTGAATCA  400

seq1  GCCATGGCTTCCTTGTAAAGGCCTATTCACCCTAAGAAAATGAATTATAT  450
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCCATGGCTTCCTAGTAAAGGCCTATTCACCCTAAGAAAATGAATTATAT  450

seq1  GGAAGAAGATTCATCCGAGGAAGATTGTGGGTGCTGGAGATGGTGCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAGATTCATCCGAGGAAGATTGTGGGTGCTGGAGATGGTGCTCAG  500

seq1  CAGGGGCCTCCTGGCCTGGCAACTCATTCTGCAGGATGCTGTCTTCTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCCTCCTGGCCTGGCAACTCATTCTGCAGGATGCTGTCTTCTTCA  550

seq1  GCTGTGGCCAATCCCAGCTCTCTTGCAGCTTCTGAGACCTGGGAGAGGAA  600
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCTGTGGCCAATCCCAGCTCTCTTGCAGTTTCTGAGACCTGGGAGAGGAA  600

seq1  GGCAGTTACTAAGACACAGGAGTGGAGGAGACAGGCATGGCAGCTGTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTTACTAAGACACAGGAGTGGAGGAGACAGGCATGGCAGCTGTGAG  650

seq1  GCTACTGCCTCCTACCACCTCAACTGTACTTGACAGTCAACATTAATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTGCCTCCTACCACCTCAACTGTACTTGACAGTCAACATTAATATT  700

seq1  TTAACTGAAGTTATTGATGTTAAATCTAAAGACAGGGCAAAATATTCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGAAGTTATTGATGTTAAATCTAAAGACAGGGCAAAATATTCAAC  750

seq1  AACAGTCACAAAAACATGGACTGACAAAGATCAACTCAGGCTTCTATCAG  800
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AACAGTCACAAAAACATGGACTGACAAAGATCAACTCA-GCTTCTATCAG  799

seq1  TTCCAACCAAAAACATGGCAAAGGAAGAGACCTCAGTGGATTACAGGAAG  850
      |||||||| ||||||||||||||||||||| |||||||||||||||||||
seq2  TTCCAACC-AAAACATGGCAAAGGAAGAGAGCTCAGTGGATTACAGGAAG  848

seq1  AAAGGAGAAGGGCACAGGATACCAGATCAATGATAATGAGAAGCACTCAT  900
      ||||||||||||||| ||| |||||||||||||| |||||||||||||||
seq2  AAAGGAGAAGGGCAC-GGACACCAGATCAATGAT-ATGAGAAGCACTCAT  896

seq1  TTGACATTTGTACTTGGCTCTAATCCCTCCAAGGTGCAGACACATGGGAT  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTGACATTTGTACTTGGCTCTAATCCTTCCAAGGTGCAGACACATGGGAT  946

seq1  GTCATAAGACCTCTGCCTGTCTCCTGTCTAAGGACCCAGATCTCACTCAA  1000
      ||||| |||||||||||||||| |||||||||   ||||||||||||| |
seq2  GTCAT-AGACCTCTGCCTGTCT-CTGTCTAAG--ACCAGATCTCACTC-A  991

seq1  ACCTCTGCATAGCATTCCACCTATCATGAGGACATGCAAGAATGTGACA-  1049
      ||||||||||||||||||| ||||||||||||||||||   |||||||| 
seq2  ACCTCTGCATAGCATTCCA-CTATCATGAGGACATGCA--GATGTGACAT  1038

seq1  TGTTA-TTCACCTGTCACCCT-GTAGTGGGCTGCAGATTAAAGCAGAGTT  1097
      ||||| ||||||||||||||| ||||||||||||||| ||||||||||||
seq2  TGTTATTTCACCTGTCACCCTGGTAGTGGGCTGCAGA-TAAAGCAGAGTT  1087

seq1  GAAAGGTGCATTTGCCAGTGGTAACAGTGT--CTCAAAAGAAG  1138
      | ||||| |||| |||||||||||| ||||  ||| |||||||
seq2  G-AAGGT-CATTCGCCAGTGGTAAC-GTGTTCCTC-AAAGAAG  1126