BAC Information

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BAC

Clone NameB6Ng01-110K11
Chromosome5 (Build37)1 (Build37)
Map Location 12,441,305 - 12,442,458184,125,197 - 184,125,281
singlet/doubletsingletsinglet
Overlap geneSema3d
Upstream geneLOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144, LOC100041626, EG668059
Downstream geneLOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717, Sema3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110K11.bB6Ng01-110K11.g
ACCDH917217DH917218
length1,1381,018
definitionDH917217|Mus musculus domesticus DNA, BAC clone: B6Ng01-110K11, 5' end.DH917218|Mus musculus domesticus DNA, BAC clone: B6Ng01-110K11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(12,441,305 - 12,442,458)(184,125,197 - 184,125,281)
sequence
gaattcagcttgatgccattatagtcacaatgtcagtgatcagatagtct
taattattttaaagtagtaaagtattatgtgtattagaaaagcagaggta
ctacttttcctttgtggttattatagttttttatttcctgacttgagtca
aaatatgtaaaggttatttttgtatacacacacaaacacacacacacact
tgagagtgaatcctaaatcttggtgttcttggtattaagttttcatgtct
gaaaaaattactgtatatgttaattattgttccgtatctaaaaaatcaat
attaacaattcatcagcttgccttatcaattttaacaagattttgtaaat
aagccacatcaattaaattcacataaaattttacatatcttgtttctcaa
atgaaaattttaatgagttaccatccatataataagctttgtgcttttta
tgtaacttggggaaatggcatggggcttcttgagtgttagattgtgcttt
tgaatctctgatttagtggaacagtgtgtaaaatctcataatcagaacac
tccctattggctccacatctgaagatacccaagggtgctgtttgtctcag
tgaacatctggagtagattatatgcagctaattggctccaggtcaagctt
gttacagacagtagcatgcagtacaacctatgcaattcactaaatccacc
cactttgggtaactcacacctacttctatttattcataattcctcccaga
tgtaggacttatatacacatgtattatgtatatgtggacactcacgtaca
tgtacacacaaaaatattgtctatatcaatgtattagtagagaggttatt
gaaaaacctttacataatctattaaaagaacaaatattgaatttaaagaa
ttgtttgaaagaaaagggacaggaatatagtgtgtagaaaatcatttagt
agtagaaaaatattcattttagtctagcatttcaacactttgtatgtatt
tttatttctccctttgtatgtttcagcacgtgtaggcacttaccagaatg
tcatcgcagttaagcatgcaacgctttgatttaactataacatttgatgg
gtgagttatgaaaaaaactatggccactgttccctgaa
gaattctgtgtttaaatcctgctttgactagctgtgtgcttataagcagg
tatagaaagaagtgtgaatcaattaatttaaagatggtataaagatatat
tgctctaatgcacctcacaggatactcaaaattctgtcaactatgggctc
catggaaatcttgagttatttattttcctacttgccaaagtagaaaaggc
cgaagaatagccacatacagcattttacttgacttcatttgttttggatt
attttaattttcaaaaagggtgtgattttgagttttgtggttatattact
cctctgggagagaggtcaatataaagggttttccggttactggctcaagg
atatgctgatttgggagaaacggttgttttgcagtttttagagaaggtga
ttagtgtatatacaccttccagagtaatatggatcaaatttgacagaaga
agacttccaaagaaatagattccagagaatcaaaaaaaaatgtcatcttg
atgatactaaaattttgttttgagatttgtatattacagaatatacagcc
ttgatgagtctcattgtaaaacatgctgaactgacctgcttgaactcctg
atgttttggactttcagctgcatccagtcaggaaacagacatcagagacc
aatgcaattgttggtgtggtcttcttaaggacaaccaattcccccatttt
ccctacattcccccccttcaaaaatatctcaacgcccatattcaatttga
ggaaattatgaagagtcatcaccccagttccctgggatttggggctggag
gtgattattctaaggttgcctttctagggaattgagaaatggtcataatt
gggacagcgaggaattgctataaatggttaatatagccataatctcactt
ggtagaaatatttatattgctaataagtgaagtcaaagagccaatttatg
tctctgagttcttgtagagtgtttcattttttataggtatgctcattaca
ttttcatgccatcccaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12441305_12442458
seq2: B6Ng01-110K11.b_46_1183

seq1  GAATTCAGCTTGATGCCATTATAGTCACAATGTCAGTGATCAGATAGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTGATGCCATTATAGTCACAATGTCAGTGATCAGATAGTCT  50

seq1  TAATTATTTTAAAGTAGTAAAGTATTATGTGTATTAGAAAAGCAGAGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTTTAAAGTAGTAAAGTATTATGTGTATTAGAAAAGCAGAGGTA  100

seq1  CTACTTTTCCTTTGTGGTTATTATAGTTTTTTATTTCCTGACTTGAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTTCCTTTGTGGTTATTATAGTTTTTTATTTCCTGACTTGAGTCA  150

seq1  AAATATGTAAAGGTTATTTTTGTATACACACACAAACACACACACACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTAAAGGTTATTTTTGTATACACACACAAACACACACACACACT  200

seq1  TGAGAGTGAATCCTAAATCTTGGTGTTCTTGGTATTAAGTTTTCATGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTGAATCCTAAATCTTGGTGTTCTTGGTATTAAGTTTTCATGTCT  250

seq1  GAAAAAATTACTGTATATGTTAATTATTGTTCCGTATCTAAAAAATCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATTACTGTATATGTTAATTATTGTTCCGTATCTAAAAAATCAAT  300

seq1  ATTAACAATTCATCAGCTTGCCTTATCAATTTTAACAAGATTTTGTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACAATTCATCAGCTTGCCTTATCAATTTTAACAAGATTTTGTAAAT  350

seq1  AAGCCACATCAATTAAATTCACATAAAATTTTACATATCTTGTTTCTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACATCAATTAAATTCACATAAAATTTTACATATCTTGTTTCTCAA  400

seq1  ATGAAAATTTTAATGAGTTACCATCCATATAATAAGCTTTGTGCTTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATTTTAATGAGTTACCATCCATATAATAAGCTTTGTGCTTTTTA  450

seq1  TGTAACTTGGGGAAATGGCATGGGGCTTCTTGAGTGTTAGATTGTGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTTGGGGAAATGGCATGGGGCTTCTTGAGTGTTAGATTGTGCTTT  500

seq1  TGAATCTCTGATTTAGTGGAACAGTGTGTAAAATCTCATAATCAGAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTCTGATTTAGTGGAACAGTGTGTAAAATCTCATAATCAGAACAC  550

seq1  TCCCTATTGGCTCCACATCTGAAGATACCCAAGGGTGCTGTTTGTCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATTGGCTCCACATCTGAAGATACCCAAGGGTGCTGTTTGTCTCAG  600

seq1  TGAACATCTGGAGTAGATTATATGCAGCTAATTGGCTCCAGGTCAAGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATCTGGAGTAGATTATATGCAGCTAATTGGCTCCAGGTCAAGCTT  650

seq1  GTTACAGACAGTAGCATGCAGTACAACCTATGCAATTCACTAAATCCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGACAGTAGCATGCAGTACAACCTATGCAATTCACTAAATCCACC  700

seq1  CACTTTGGGTAACTCACACCTACTTCTATTTATTCATAATTCCTCCCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGGGTAACTCACACCTACTTCTATTTATTCATAATTCCTCCCAGA  750

seq1  TGTAGGACTTATATACACATGTATTATGTATATGTGGACACTCACGTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGACTTATATACACATGTATTATGTATATGTGGACACTCACGTACA  800

seq1  TGTACACACAAAAATATTGTCTATATCAATGTATTAGTAGAGAGGTTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACACAAAAATATTGTCTATATCAATGTATTAGTAGAGAGGTTATT  850

seq1  GAAAAACCTTTACATAATCTATTAAAAGAACAAATATTGAATTTAAAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACCTTTACATAATCTATTAAAAGAACAAATATTGAATTTAAAGAA  900

seq1  TTGTTTGAAAGAAAAGGGGACAGGAATAATAGTGTGTAGAAAATCAATTT  950
      ||||||||||||||| ||||||||||| ||||||||||||||||| ||||
seq2  TTGTTTGAAAGAAAA-GGGACAGGAAT-ATAGTGTGTAGAAAATC-ATTT  947

seq1  AGTAGTAGAAAAATATTCATTTTTAAGTTCTAGCATTTCCAACACTTTGT  1000
      |||||||||||||||||||||||  || |||||||||| |||||||||||
seq2  AGTAGTAGAAAAATATTCATTTT--AG-TCTAGCATTT-CAACACTTTGT  993

seq1  ATGTA-TTTTATTTCTCCCCTTTGGTATGTTTCAGCACGTGTAGGCACTT  1049
      ||||| |||||||||||||  || ||||||||||||||||||||||||||
seq2  ATGTATTTTTATTTCTCCC--TTTGTATGTTTCAGCACGTGTAGGCACTT  1041

seq1  ACCAGAATGTCATCGCAGTAAAGCATGCAACGCTTTGATTTTTAACTTAT  1099
      ||||||||||||||||||| ||||||||||||||||||  ||||||   |
seq2  ACCAGAATGTCATCGCAGTTAAGCATGCAACGCTTTGA--TTTAAC---T  1086

seq1  TTAACATTATGAATGAGTGAGTTTATGAGAAACACTATGGCCACTGTTCA  1149
       ||||||| || ||| ||||| |||||| ||| |||||||||||||||| 
seq2  ATAACATT-TG-ATGGGTGAG-TTATGAAAAAAACTATGGCCACTGTTCC  1133

seq1  CTGAA  1154
      |||||
seq2  CTGAA  1138

seq1: chr1_184125197_184125281
seq2: B6Ng01-110K11.g_139_220

seq1  AATTAATTGCTTTAAAGATGGTATAAAGATATATTGCTCTAATAAATCTT  50
      ||||||    |||||||||||||||||||||||||||||||||  | || 
seq2  AATTAA----TTTAAAGATGGTATAAAGATATATTGCTCTAATGCACCTC  46

seq1  ATAGGATCCTC-ATATTCTGTCTAACGTGGGCTCCA  85
      | ||||| ||| | |||||||| |   |||||||||
seq2  ACAGGATACTCAAAATTCTGTCAACTATGGGCTCCA  82