BAC Information

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BAC

Clone NameB6Ng01-111P23
Chromosome5 (Build37)
Map Location 143,998,907 - 144,087,150
singlet/doubletdoublet
Overlap geneZfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4
Upstream geneD930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb
Downstream geneGrid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111P23.bB6Ng01-111P23.g
ACCDH918185DH918186
length1,014882
definitionDH918185|Mus musculus domesticus DNA, BAC clone: B6Ng01-111P23, 5' end.DH918186|Mus musculus domesticus DNA, BAC clone: B6Ng01-111P23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,998,907 - 143,999,920)(144,086,262 - 144,087,150)
sequence
gaattcacttttctcttacggtctgtgtagtttctctttgtttggtttgt
ttcaatttcttcgtttttgcgtcattgcttggttcaaaaagggtatgtag
ctcaggctgtcctggaactcttcagccagggttaaaggtatatgccacca
tccctggccctggtgatgactttcaatgaccacgacgttcagtggcagac
ccatttgatttttttttctaccctcaaataccctttcttccccttggcta
gagttacttgttaattaggagtcatttatttgctggcagatgccattgtg
ctctcctaggcattggcattcaccaaagagttgagtcttccttcccagcg
gctcagtcaggttcccttagtgggagagtcccaaatagagacacacagat
tggggaagaagacagtgctaagtttatcctcagtgtgctctcagtaaaga
tctgggccctgggtgcttttaatatgagagaagttcatctacttgaagac
agattctgtcagctcatagtcacgtagccatagatctgtggtcttgtctg
atcttactgtttgggtttggttttttttttgtttttgtttttgcttttgt
ttgtttaaattatttgtgggtgtcacatgccatgttgggtgtgtgtggag
gtcaaaagccaaggtttagggagtcaggttgtagggattgaactcaagtt
accaggtttggtggcaagcaccttcgcctgctgagccatctcgctggccc
ccatgttttcctttataaggcgctggcatttacatttcttttccagagca
atgatttcatgtttttctctcctgaaaaaagctcacaggtcacggcttga
agcatctttgtcatatggttaatgtatatttatcatagtatacactcggg
tgcatatatatatatatatatatatatagatataaatagacgactgatta
tcgtaggtaacacaggaatctacttcatttggctaagtgcctccccaaga
agtctgtggagcct
gaattccaggctagctcgggttatgtaatgagactgtttcaaacacagag
cggagccgaggagatggctgggcagtcacagagctgccgtgcaaccagaa
ctggagggatggcagagaagcaatccaagagaataaagcgtaaggagact
cagatccccagagcacacataaatgctggccgggatggtggccggcctgt
atctcagtatttggtggaggcaatgacaggagatctgcagggcaaactgt
ctggctagactagccacacagcgagagaacctgggccaggagagctgcca
gggaagatatctgactctgaccacacgcatgtgctcatgtgtggacacag
gcacaccacacacacaggcaccacaaacacgtgagcgagttcgtagcttg
cttttctgccatctgaagagaagatgatagactcacctccgttgcatgtg
gaggacctcctgatgggggacgaggggtgagaggtgaggctgaccctgct
cctgtgatttcaggtgtgctccagggtaatcccgcagtgcctccagaggg
ccgtgcagacgcttcttcatcagctcttccacacacggtatttgtggctc
agggttcgcacagggccacatttggcctgggtgattaattgctgctgttc
tatagcctgtgggagcacttcgtggtttccagcacagggaaggatgctgg
aagtttggcgagtgctgggcttggaatctctccttatggaccagttacca
cttgcctttgggctttagggtgactagtttgtttttcatttctggttgac
cgtggtgctgggattgagctggggtgttgtgctcatctggcgtgctctct
gtctcgcactggagtctgtcccccacacctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_143998907_143999920
seq2: B6Ng01-111P23.b_49_1062

seq1  GAATTCACTTTTCTCTTACGGTCTGTGTAGTTTCTCTTTGTTTGGTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTTCTCTTACGGTCTGTGTAGTTTCTCTTTGTTTGGTTTGT  50

seq1  TTCAATTTCTTCGTTTTTGCGTCATTGCTTGGTTCAAAAAGGGTATGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTCTTCGTTTTTGCGTCATTGCTTGGTTCAAAAAGGGTATGTAG  100

seq1  CTCAGGCTGTCCTGGAACTCTTCAGCCAGGGTTAAAGGTATATGCCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCTGTCCTGGAACTCTTCAGCCAGGGTTAAAGGTATATGCCACCA  150

seq1  TCCCTGGCCCTGGTGATGACTTTCAATGACCACGACGTTCAGTGGCAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGCCCTGGTGATGACTTTCAATGACCACGACGTTCAGTGGCAGAC  200

seq1  CCATTTGATTTTTTTTTCTACCCTCAAATACCCTTTCTTCCCCTTGGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGATTTTTTTTTCTACCCTCAAATACCCTTTCTTCCCCTTGGCTA  250

seq1  GAGTTACTTGTTAATTAGGAGTCATTTATTTGCTGGCAGATGCCATTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACTTGTTAATTAGGAGTCATTTATTTGCTGGCAGATGCCATTGTG  300

seq1  CTCTCCTAGGCATTGGCATTCACCAAAGAGTTGAGTCTTCCTTCCCAGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTAGGCATTGGCATTCACCAAAGAGTTGAGTCTTCCTTCCCAGCG  350

seq1  GCTCAGTCAGGTTCCCTTAGTGGGAGAGTCCCAAATAGAGACACACAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTCAGGTTCCCTTAGTGGGAGAGTCCCAAATAGAGACACACAGAT  400

seq1  TGGGGAAGAAGACAGTGCTAAGTTTATCCTCAGTGTGCTCTCAGTAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAGAAGACAGTGCTAAGTTTATCCTCAGTGTGCTCTCAGTAAAGA  450

seq1  TCTGGGCCCTGGGTGCTTTTAATATGAGAGAAGTTCATCTACTTGAAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCCCTGGGTGCTTTTAATATGAGAGAAGTTCATCTACTTGAAGAC  500

seq1  AGATTCTGTCAGCTCATAGTCACGTAGCCATAGATCTGTGGTCTTGTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTGTCAGCTCATAGTCACGTAGCCATAGATCTGTGGTCTTGTCTG  550

seq1  ATCTTACTGTTTGGGTTTGGTTTTTTTTTTGTTTTTGTTTTTGCTTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACTGTTTGGGTTTGGTTTTTTTTTTGTTTTTGTTTTTGCTTTTGT  600

seq1  TTGTTTAAATTATTTGTGGGTGTCACATGCCATGTTGGGTGTGTGTGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAAATTATTTGTGGGTGTCACATGCCATGTTGGGTGTGTGTGGAG  650

seq1  GTCAAAAGCCAAGGTTTAGGGAGTCAGGTTGTAGGGATTGAACTCAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAAGCCAAGGTTTAGGGAGTCAGGTTGTAGGGATTGAACTCAAGTT  700

seq1  ACCAGGTTTGGTGGCAAGCACCTTCGCCTGCTGAGCCATCTCGCTGGCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTTTGGTGGCAAGCACCTTCGCCTGCTGAGCCATCTCGCTGGCCC  750

seq1  CCATGTTTTCCTTTATAAGGCGCTGGCATTTACATTTCTTTTCCAGAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTTTCCTTTATAAGGCGCTGGCATTTACATTTCTTTTCCAGAGCA  800

seq1  ATGATTTCATGTTTTTCTCTCCTGAAAACAGCTCACAGGTCACAGGCTTG  850
      |||||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  ATGATTTCATGTTTTTCTCTCCTGAAAAAAGCTCACAGGTCAC-GGCTTG  849

seq1  AAGCATCTTTGTCATATGGTTAATGTATATTTATCATAGTATACACTCGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAGCATCTTTGTCATATGGTTAATGTATATTTATCATAGTATACACTCGG  899

seq1  GTGTATATATATATATATATATATATATATATATATATATACTAACTGA-  949
      ||| ||||||||||||||||||||||||| ||||| ||| ||  ||||| 
seq2  GTGCATATATATATATATATATATATATAGATATAAATAGAC-GACTGAT  948

seq1  TAACGTAGGTACCACAGGAATCTACTTCATTGTGCTAAGTGCCTCCCACA  999
      || |||||||| |||||||||||||||||||  ||||||||||||||  |
seq2  TATCGTAGGTAACACAGGAATCTACTTCATTTGGCTAAGTGCCTCCCCAA  998

seq1  G-AGTCTGTGGTGCCT  1014
      | ||||||||| ||||
seq2  GAAGTCTGTGGAGCCT  1014

seq1: chr5_144086262_144087150
seq2: B6Ng01-111P23.g_67_948 (reverse)

seq1  GTAGGTGT-GGGGACAGACTTCAGTGGCCGAGACAGAGAGCACGCCAGAT  49
      |||||||| ||||||||||| |||||  ||||||||||||||||||||||
seq2  GTAGGTGTGGGGGACAGACTCCAGTG--CGAGACAGAGAGCACGCCAGAT  48

seq1  GAGCACAACAACCCCAGCTCAATCCCCAGCACCACGGTCAACCCAGAAAT  99
      ||||||||| ||||||||||||| ||||||||||||||||| ||||||||
seq2  GAGCACAAC-ACCCCAGCTCAAT-CCCAGCACCACGGTCAA-CCAGAAAT  95

seq1  GAAAAAACAAAACTAGTCACCCTAAAAGCCCATAGGCAAGTGGTAACTGG  149
      ||||||   |||||||||||||| |||||||| |||||||||||||||||
seq2  GAAAAA--CAAACTAGTCACCCT-AAAGCCCAAAGGCAAGTGGTAACTGG  142

seq1  TCCATAAGGAGAGATTCCAAGCCCAGCACTCGCCAAACTTCCAGCATCCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAGGAGAGATTCCAAGCCCAGCACTCGCCAAACTTCCAGCATCCT  192

seq1  TCCCTGTGCTGGAAACCACGAAGTGCTCCCACAGGCTATAGAACAGCAGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTGCTGGAAACCACGAAGTGCTCCCACAGGCTATAGAACAGCAGC  242

seq1  AATTAATCACCCAGGCCAAATGTGGCCCTGTGCGAACCCTGAGCCACAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATCACCCAGGCCAAATGTGGCCCTGTGCGAACCCTGAGCCACAAA  292

seq1  TACCGTGTGTGGAAGAGCTGATGAAGAAGCGTCTGCACGGCCCTCTGGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGTGTGTGGAAGAGCTGATGAAGAAGCGTCTGCACGGCCCTCTGGAG  342

seq1  GCACTGCGGGATTACCCTGGAGCACACCTGAAATCACAGGAGCAGGGTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGCGGGATTACCCTGGAGCACACCTGAAATCACAGGAGCAGGGTCA  392

seq1  GCCTCACCTCTCACCCCTCGTCCCCCATCAGGAGGTCCTCCACATGCAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCACCTCTCACCCCTCGTCCCCCATCAGGAGGTCCTCCACATGCAAC  442

seq1  GGAGGTGAGTCTATCATCTTCTCTTCAGATGGCAGAAAAGCAAGCTACGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGAGTCTATCATCTTCTCTTCAGATGGCAGAAAAGCAAGCTACGA  492

seq1  ACTCGCTCACGTGTTTGTGGTGCCTGTGTGTGTGGTGTGCCTGTGTCCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGCTCACGTGTTTGTGGTGCCTGTGTGTGTGGTGTGCCTGTGTCCAC  542

seq1  ACATGAGCACATGCGTGTGGTCAGAGTCAGATATCTTCCCTGGCAGCTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGCACATGCGTGTGGTCAGAGTCAGATATCTTCCCTGGCAGCTCT  592

seq1  CCTGGCCCAGGTTCTCTCGCTGTGTGGCTAGTCTAGCCAGACAGTTTGCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCCAGGTTCTCTCGCTGTGTGGCTAGTCTAGCCAGACAGTTTGCC  642

seq1  CTGCAGATCTCCTGTCATTGCCTCCACCAAATACTGAGATACAGGCCGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGATCTCCTGTCATTGCCTCCACCAAATACTGAGATACAGGCCGGC  692

seq1  CACCATCCCGGCCAGCATTTATGTGTGCTCTGGGGATCTGAGTCTCCTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCCCGGCCAGCATTTATGTGTGCTCTGGGGATCTGAGTCTCCTTA  742

seq1  CGCTTTATTCTCTTGGATTGCTTCTCTGCCATCCCTCCAGTTCTGGTTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTTATTCTCTTGGATTGCTTCTCTGCCATCCCTCCAGTTCTGGTTGC  792

seq1  ACGGCAGCTCTGTGACTGCCCAGCCATCTCCTCGGCTCCGCTCTGTGTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCAGCTCTGTGACTGCCCAGCCATCTCCTCGGCTCCGCTCTGTGTTT  842

seq1  GAAACAGTCTCATTACATAACCCGAGCTAGCCTGGAATTC  889
      ||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGTCTCATTACATAACCCGAGCTAGCCTGGAATTC  882