BAC Information

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BAC

Clone NameB6Ng01-112I20
Chromosome5 (Build37)
Map Location 92,622,236 - 92,793,002
singlet/doubletdoublet
Overlap geneVdp, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228
Upstream geneBtc, 9130213B05Rik, EG665860, LOC665864, LOC100040506, Ppia-ps5_892.1, Rchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, LOC100040605
Downstream geneArt3, Nup54, Scarb2, Gm1381, D5Ertd593e, 4932413O14Rik, Shroom3, LOC623798, Ankrd56, Sept11, Ccni, LOC100040826, 2010109A12Rik, Ccng2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112I20.bB6Ng01-112I20.g
ACCDH918586DH918587
length644959
definitionDH918586|Mus musculus domesticus DNA, BAC clone: B6Ng01-112I20, 5' end.DH918587|Mus musculus domesticus DNA, BAC clone: B6Ng01-112I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,622,236 - 92,622,878)(92,792,044 - 92,793,002)
sequence
gaattcacattcctccattttgaaggggcgttttctcagatgtcattgtt
gtctgtggttgtgtgtgggcgtttgggtgccgctaggtctgagcctgact
tgctaaaccctcccttctctttgtggagacccggtgtgctgtcctgtgcc
ccgttatgtaaaaggcagaaggaaagggctccagccctcttagcaccatg
tcttcagtgcctgtggcctcctgtccaccggctgtgtcctcaggtgtagg
ataccaggagagaaaaaaaggatttccattcctgtcactttctttctggg
tgctggggctccaaccctggcctctgtgtgtgtgggagtggtgctgtaca
gaaagccatactgcaagcccgcatgtttgcagagagcatcatcttgcagg
ccttgtgatgatgataatgccaggtaccgaagagtaagaagttagtaact
aacattttcagaaacaaatttttctttctttatgacaataattttttggc
cagttaacccatgtggatagctattcctctggaaaactttttaaatggat
ttgacttctcttacgcttattgtcagaattggaattaaagctgccgtaat
tcacagtcataatcaccaaaccatacagttttaatcaggagcct
gaattctatttaataaaacatcaagctttttcttcaacatctccacaagc
caggagatgcagtggttctgagctggcggtaatgacagcctgtgctgggt
cagccacccaaagctaggaacacgaatgagcactcgaggttgcaacgccg
gtgattttgtttttatagtccttgataggacgtatacaagcatacaactc
agtgcaactaagagatgcctttttttaaaaaagaagggaaaagtgtaaaa
ttaaaaaaaaaatagacacaatgtacagctatggggagagtgtttcaggc
atgaaattggaaggaaaaaaaaaagtaaagatagatgaaggtcacctggt
atgtataatatatgccttatccatatatgtgtggttatgtgagggaggca
ggatgagctgcctggaactgggaccatcttcctgagttggtgggactctg
cccagaatccctacacaatcaaagcatttctaggaaaagccacctgctga
gcagctgctgagtgctttcaccttccagtggcttcttaactccagcagag
gggacagtcacagcgctgacttaaggacaaaagagaaactccaggaggca
agaaagctacgtgagtcaaggaggggaattcctgatactgcctgaagatt
gctggtctataaatgctcctcagactcctcaggttcagccttcctgcctg
ccgttgctctctgcaaagagagatctccaaagcccaggcagagagctgca
gcggctgctgagatgaacaggaaggtcacagccatagccctggctgcaat
atctgggccacagctgctcaaggtatttggtgcccgtagcttctgagtct
gtctgttccttgtgttacttttcaaatatctttttctctaaaatatacag
tttaaaaatttacttaattcacttataagaaggttctaaggggaaggtat
gagggaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_92622236_92622878
seq2: B6Ng01-112I20.b_36_679

seq1  GAATTCACATTCCTCCATTTTGAAGGGGCGTTTTCTCAGATGTCATTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTCCTCCATTTTGAAGGGGCGTTTTCTCAGATGTCATTGTT  50

seq1  GTCTGTGGTTGTGTGTGGGCGTTTGGGTGCCGCTAGGTCTGAGCCTGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGGTTGTGTGTGGGCGTTTGGGTGCCGCTAGGTCTGAGCCTGACT  100

seq1  TGCTAAACCCTCCCTTCTCTTTGTGGAGACCCGGTGTGCTGTCCTGTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAACCCTCCCTTCTCTTTGTGGAGACCCGGTGTGCTGTCCTGTGCC  150

seq1  CCGTTATGTAAAAGGCAGAAGGAAAGGGCTCCAGCCCTCTTAGCACCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTATGTAAAAGGCAGAAGGAAAGGGCTCCAGCCCTCTTAGCACCATG  200

seq1  TCTTCAGTGCCTGTGGCCTCCTGTCCACCGGCTGTGTCCTCAGGTGTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGTGCCTGTGGCCTCCTGTCCACCGGCTGTGTCCTCAGGTGTAGG  250

seq1  ATACCAGGAGAGAAAAAAAGGATTTCCATTCCTGTCACTTTCTTTCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGGAGAGAAAAAAAGGATTTCCATTCCTGTCACTTTCTTTCTGGG  300

seq1  TGCTGGGGCTCCAACCCTGGCCTCTGTGTGTGTGGGAGTGGTGCTGTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGGCTCCAACCCTGGCCTCTGTGTGTGTGGGAGTGGTGCTGTACA  350

seq1  GAAAGCCATACTGCAAGCCCGCATGTTTGCAGAGAGCATCATCTTGCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCATACTGCAAGCCCGCATGTTTGCAGAGAGCATCATCTTGCAGG  400

seq1  CCTTGTGATGATGATAATGCCAGGTACCGAAGAGTAAGAAGTTAGTAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGATGATGATAATGCCAGGTACCGAAGAGTAAGAAGTTAGTAACT  450

seq1  AACATTTTCAGAAACAAATTTTTCTTTCTTTATGACAATAATTTTTTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTCAGAAACAAATTTTTCTTTCTTTATGACAATAATTTTTTGGC  500

seq1  CAGTTAACCCATGTGGATAGCTATTCCTCTGGAAAACTTTTTAAATGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAACCCATGTGGATAGCTATTCCTCTGGAAAACTTTTTAAATGGAT  550

seq1  TTGACTTCTCTTACGCTTATTGTCAGAATTGGAATTAAAGCTGCCGTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTCTCTTACGCTTATTGTCAGAATTGGAATTAAAGCTGCCGTAAT  600

seq1  TCACAGTCATAATCACCAAACCATACAG-TTTAATCAGGAGCCT  643
      |||||||||||||||||||||||||||| |||||||||||||||
seq2  TCACAGTCATAATCACCAAACCATACAGTTTTAATCAGGAGCCT  644

seq1: chr5_92792044_92793002
seq2: B6Ng01-112I20.g_67_1025 (reverse)

seq1  AGTTCCCT-ATACCCTCCCCTTAGAA-CTTCTAATATGTGAAATAAAGTA  48
      |||||||| ||||| ||||||||||| ||||| ||| ||| ||| |||||
seq2  AGTTCCCTCATACCTTCCCCTTAGAACCTTCTTATAAGTG-AATTAAGTA  49

seq1  AATTTTTAAAACTGTATATTTTAGAGAAAAAGATATTTGAAAAGTAACAC  98
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTT-AAACTGTATATTTTAGAGAAAAAGATATTTGAAAAGTAACAC  98

seq1  AAGGAACAGACAGACTCAGAAGCTACGGGCACCAAATACCTTGAGCAGCT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACAGACAGACTCAGAAGCTACGGGCACCAAATACCTTGAGCAGCT  148

seq1  GTGGCCCAGATATTGCAGCCAGGGCTATGGCTGTGACCTTCCTGTTCATC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCCAGATATTGCAGCCAGGGCTATGGCTGTGACCTTCCTGTTCATC  198

seq1  TCAGCAGCCGCTGCAGCTCTCTGCCTGGGCTTTGGAGATCTCTCTTTGCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGCCGCTGCAGCTCTCTGCCTGGGCTTTGGAGATCTCTCTTTGCA  248

seq1  GAGAGCAACGGCAGGCAGGAAGGCTGAACCTGAGGAGTCTGAGGAGCATT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAACGGCAGGCAGGAAGGCTGAACCTGAGGAGTCTGAGGAGCATT  298

seq1  TATAGACCAGCAATCTTCAGGCAGTATCAGGAATTCCCCTCCTTGACTCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACCAGCAATCTTCAGGCAGTATCAGGAATTCCCCTCCTTGACTCA  348

seq1  CGTAGCTTTCTTGCCTCCTGGAGTTTCTCTTTTGTCCTTAAGTCAGCGCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGCTTTCTTGCCTCCTGGAGTTTCTCTTTTGTCCTTAAGTCAGCGCT  398

seq1  GTGACTGTCCCCTCTGCTGGAGTTAAGAAGCCACTGGAAGGTGAAAGCAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGTCCCCTCTGCTGGAGTTAAGAAGCCACTGGAAGGTGAAAGCAC  448

seq1  TCAGCAGCTGCTCAGCAGGTGGCTTTTCCTAGAAATGCTTTGATTGTGTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGCTGCTCAGCAGGTGGCTTTTCCTAGAAATGCTTTGATTGTGTA  498

seq1  GGGATTCTGGGCAGAGTCCCACCAACTCAGGAAGATGGTCCCAGTTCCAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTCTGGGCAGAGTCCCACCAACTCAGGAAGATGGTCCCAGTTCCAG  548

seq1  GCAGCTCATCCTGCCTCCCTCACATAACCACACATATATGGATAAGGCAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCATCCTGCCTCCCTCACATAACCACACATATATGGATAAGGCAT  598

seq1  ATATTATACATACCAGGTGACCTTCATCTATCTTTACTTTTTTTTTTCCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATACATACCAGGTGACCTTCATCTATCTTTACTTTTTTTTTTCCT  648

seq1  TCCAATTTCATGCCTGAAACACTCTCCCCATAGCTGTACATTGTGTCTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTTCATGCCTGAAACACTCTCCCCATAGCTGTACATTGTGTCTAT  698

seq1  TTTTTTTTTAATTTTACACTTTTCCCTTCTTTTTTAAAAAAAGGCATCTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAATTTTACACTTTTCCCTTCTTTTTTAAAAAAAGGCATCTC  748

seq1  TTAGTTGCACTGAGTTGTATGCTTGTATACGTCCTATCAAGGACTATAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGCACTGAGTTGTATGCTTGTATACGTCCTATCAAGGACTATAAA  798

seq1  AACAAAATCACCGGCGTTGCAACCTCGAGTGCTCATTCGTGTTCCTAGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATCACCGGCGTTGCAACCTCGAGTGCTCATTCGTGTTCCTAGCT  848

seq1  TTGGGTGGCTGACCCAGCACAGGCTGTCATTACCGCCAGCTCAGAACCAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGGCTGACCCAGCACAGGCTGTCATTACCGCCAGCTCAGAACCAC  898

seq1  TGCATCTCCTGGCTTGTGGAGATGTTGAAGAAAAAGCTTGATGTTTTATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTCCTGGCTTGTGGAGATGTTGAAGAAAAAGCTTGATGTTTTATT  948

seq1  GAATAGAATTC  959
       ||||||||||
seq2  AAATAGAATTC  959