BAC Information

Click to search

BAC

Clone NameB6Ng01-113A15
Chromosome5 (Build37)
Map Location 113,140,930 - 113,282,284
singlet/doubletdoublet
Overlap geneMyo18b
Upstream geneA230057G18Rik, Cryba4, Crybb1, Tpst2, Tfip11, 2810002G02Rik, Hps4, EG625424, Asphd2, Sez6l, EG625464
Downstream geneAdrbk2, Crybb2, LOC100042920, Crybb3, 2900026A02Rik, Gm854, Rutbc2, Aym1, C530024P05Rik, Cmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113A15.bB6Ng01-113A15.g
ACCDH918936DH918937
length334887
definitionDH918936|Mus musculus domesticus DNA, BAC clone: B6Ng01-113A15, 5' end.DH918937|Mus musculus domesticus DNA, BAC clone: B6Ng01-113A15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,281,951 - 113,282,284)(113,140,930 - 113,141,712)
sequence
gaattcattcattaagctgggatggctgttctgggatggaaacaattaga
agtttctgaaaaatgaactccccgaagtggctggggctagaaggcagagc
tccctgcagctccaggcctcgggggtgagtggggaggtggcagcgtgagg
gctctggggttcggtgtgtcagagaaggctctgtgcttttagactctgtt
tctctgaataatagtggaagctgatgtcccttagtggttgcccggtggga
agtgctgcttaagcaattttactcccacgcaaagtgctgctgatagtact
gatggtggtgttgatggttgtgaggtggtgctga
gaattcctcagagcactgggtagaggctcgtgctaccgacacagctttgt
ggtagatctctttctagacgctgtgaagccagcgtgtgcagccttcatct
catgacatgtgacaatgtccccggcttcatagtgaggacacgggagcaga
ggagtcaagagacttgcccagctcacacagccagacacaaaggtctggaa
gaatgagtaccgactacagactatgcactgacaaccctccccttttggtc
tcttctatagcagtgagcactgactacagagcagggtcttaaaataaatt
acaatatgacatagccacactcccctccctggcatgtgccaaaggactcc
acgtcccatcccacagatctctgcttagctatagtcattttcattgctct
attcacagtaaccaggaaacagacaccacataaatgtcctccaacaaaca
atgagaagtgaaaacgtggtacccatgtgcactgtggaacataaagaaga
atgaaaccatgaattttcaggcaaatggatggaactagaaaagatcatgg
aggaggatcatttttagtggaggacccagggacccagagagacaaaagtc
aggttccatttcaccagaggctcccaattccaggtcttcagatgtcagta
cagatcctcaggtatagtggtttatatatgcttggccccagggagtggca
ctatttaggaggtgtggcctttgttggaggaagtgtgtcactgtgggtat
ggtcattaaaaccctcactcatccttgctgcctggaagccaatattctcc
tagcagtcttcagattgaagatatagaactccccagcatctcctgaccat
gcctgcctggacgctgccatgctcccgccttgatgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_113281951_113282284
seq2: B6Ng01-113A15.b_43_376 (reverse)

seq1  TCAGCACCACCTCACAACCATCAACACCACCATCAGTACTATCAGCAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACCACCTCACAACCATCAACACCACCATCAGTACTATCAGCAGCA  50

seq1  CTTTGCGTGGGAGTAAAATTGCTTAAGCAGCACTTCCCACCGGGCAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCGTGGGAGTAAAATTGCTTAAGCAGCACTTCCCACCGGGCAACCA  100

seq1  CTAAGGGACATCAGCTTCCACTATTATTCAGAGAAACAGAGTCTAAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGGACATCAGCTTCCACTATTATTCAGAGAAACAGAGTCTAAAAGC  150

seq1  ACAGAGCCTTCTCTGACACACCGAACCCCAGAGCCCTCACGCTGCCACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCCTTCTCTGACACACCGAACCCCAGAGCCCTCACGCTGCCACCT  200

seq1  CCCCACTCACCCCCGAGGCCTGGAGCTGCAGGGAGCTCTGCCTTCTAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTCACCCCCGAGGCCTGGAGCTGCAGGGAGCTCTGCCTTCTAGCC  250

seq1  CCAGCCACTTCGGGGAGTTCATTTTTCAGAAACTTCTAATTGTTTCCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCACTTCGGGGAGTTCATTTTTCAGAAACTTCTAATTGTTTCCATC  300

seq1  CCAGAACAGCCATCCCAGCTTAATGAATGAATTC  334
      ||||||||||||||||||||||||||||||||||
seq2  CCAGAACAGCCATCCCAGCTTAATGAATGAATTC  334

seq1: chr5_113140930_113141712
seq2: B6Ng01-113A15.g_69_855

seq1  GAATTCCTCAGAGCACTGGGTAGAGGCTCGTGCTACCGACACAGCTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGAGCACTGGGTAGAGGCTCGTGCTACCGACACAGCTTTGT  50

seq1  GGTAGATCTCTTTCTAGACGCTGTGAAGCCAGCGTGTGCAGCCTTCATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGATCTCTTTCTAGACGCTGTGAAGCCAGCGTGTGCAGCCTTCATCT  100

seq1  CATGACATGTGACAATGTCCCCGGCTTCATAGTGAGGACACGGGAGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACATGTGACAATGTCCCCGGCTTCATAGTGAGGACACGGGAGCAGA  150

seq1  GGAGTCAAGAGACTTGCCCAGCTCACACAGCCAGACACAAAGGTCTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCAAGAGACTTGCCCAGCTCACACAGCCAGACACAAAGGTCTGGAA  200

seq1  GAATGAGTACCGACTACAGACTATGCACTGACAACCCTCCCCTTTTGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGTACCGACTACAGACTATGCACTGACAACCCTCCCCTTTTGGTC  250

seq1  TCTTCTATAGCAGTGAGCACTGACTACAGAGCAGGGTCTTAAAATAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTATAGCAGTGAGCACTGACTACAGAGCAGGGTCTTAAAATAAATT  300

seq1  ACAATATGACATAGCCACACTCCCCTCCCTGGCATGTGCCAAAGGACTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATGACATAGCCACACTCCCCTCCCTGGCATGTGCCAAAGGACTCC  350

seq1  ACGTCCCATCCCACAGATCTCTGCTTAGCTATAGTCATTTTCATTGCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCCCATCCCACAGATCTCTGCTTAGCTATAGTCATTTTCATTGCTCT  400

seq1  ATTCACAGTAACCAGGAAACAGACACCACATAAATGTCCTCCAACAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAGTAACCAGGAAACAGACACCACATAAATGTCCTCCAACAAACA  450

seq1  ATGAGAAGTGAAAACGTGGTACCCATGTGCACTGTGGAACATAAAGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAGTGAAAACGTGGTACCCATGTGCACTGTGGAACATAAAGAAGA  500

seq1  ATGAAACCATGAATTTTCAGGCAAATGGATGGAACTAGAAAAGATCATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACCATGAATTTTCAGGCAAATGGATGGAACTAGAAAAGATCATGG  550

seq1  AGGAGGATCA-TATTAGTGGAGGACCCAGGGACCCAGAGAGACAAAAGTC  599
      |||||||||| | |||||||||||||||||||||||||||||||||||||
seq2  AGGAGGATCATTTTTAGTGGAGGACCCAGGGACCCAGAGAGACAAAAGTC  600

seq1  AGGTTCCATTTCACCAGAGGCTCCCAATTCCAGGTCTTCAGATGTCAGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCATTTCACCAGAGGCTCCCAATTCCAGGTCTTCAGATGTCAGTA  650

seq1  CAGATCCTCAGGTATAGTGGTTTATATATGCTTGG-CCCAGGGAGTGGCA  698
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAGATCCTCAGGTATAGTGGTTTATATATGCTTGGCCCCAGGGAGTGGCA  700

seq1  CTA-TTAGGAGGTGTGGCC-TTGTTGGAGGAAGTGTGTCACTGTGGGTAT  746
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTATTTAGGAGGTGTGGCCTTTGTTGGAGGAAGTGTGTCACTGTGGGTAT  750

seq1  GGTCATTAAAACCCTCACTCATCCTTGCTGCCTGGAA  783
      |||||||||||||||||||||||||||||||||||||
seq2  GGTCATTAAAACCCTCACTCATCCTTGCTGCCTGGAA  787