BAC Information

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BAC

Clone NameB6Ng01-113L03
Chromosome5 (Build37)
Map Location 59,952,742 - 59,953,685
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041396, LOC666499, EG625870, LOC100041425
Downstream geneLOC546866, Cbfa2t2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113L03.bB6Ng01-113L03.g
ACCDH919422DH919423
length1,239944
definitionDH919422|Mus musculus domesticus DNA, BAC clone: B6Ng01-113L03, 5' end.DH919423|Mus musculus domesticus DNA, BAC clone: B6Ng01-113L03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcccccacctgatagtcaatcagcttatgtgccaaaaaacggg
tcatcgggccctcggtcccagggccctcaaagatatgggaaccggtttgt
caggacccaggaagcagtcagagaggcgacccaggaagacccacaagggt
ggacctgcgtgccgcctccgacttcctattaatgcctcaaatgagtattc
agccggtgccagtggagcctataccatccttgcccccgggaaccatgggc
cttattctcggccggggttcactcaccttgcagggcttagtagtccaccc
tggagttatggattgtcaacattcccctgaaatacaggtcctgtgctcaa
gccctaaaggcgttttttctattagtaaaggagataggatagctcagctg
ctgctcctccctgataataccagggaaaaatctgcaggacctgagataaa
gaaaatgggctcctcaggaaatgattctgcctatttggttgtatctttaa
atgatagacctaagctctgccttaagatcaacggaaaagagtttgaaggc
atccttgataccggagcagataaaagtataatttctacacattggtggcc
caaagcatggcccaccacagagtcatctcattcattacagggcctaggat
atcaatcatgtcccactataagctccattgccttgacgtgggaatcctct
gaaggacagcaagggaaattcataccttatgtgctcccactcccggttaa
cctctggggaagggatattatgcagcatttgggccttattttgtccaatg
aaaacgccccatcgggagggtattcagctaaagcaaaaaatatcatggca
aagatgggttataaagaaggaaaagggttaggacatcaagaacagggaag
gatagagcccatctcacctaatggaaaccaagacagacagggtctgggtt
tttccttagtggccattggggcagcacgacccatacatgaaaacaaggga
cccagtgtgggttctcaatgcacctatcctctgaaaactagagctgtgat
caactgtagagacattaactaaggcatattgaacctttttcctcaccttg
gaaactcaatttttgttattagaaagtcaggaattgagactgctccatga
ctctggccttatgacaaatgactaatggccagtaattggtctggtacttc
ctacactgacggattatattaagaataaagaatgttctc
gaattcataggggatacctgctattagcatctgtgtagaagtcacacaca
cccttccccaatcttcctctatataaaatatccactgcattgtgcttcac
agacatgggtggaagaagaagcaggaaatatgagaactactttccttccc
cttcagtgtatctttctcattcttttgtattagaaaagtgcagtagcaca
tctggattcttaggaaaagatattattatgtggaatagatttcatacaac
tgatgcttctcaagaggcagagtatgttgaatatatacactaaagattta
gtaatgtagctcttttggaaggactaatgcaatggataatgtattgggta
agcagaacaaacaaaaataactaaatcaatttcatgtacttaattatgaa
atgtaacatctttatagatctcctttaacaatgtcaagtttggtattatt
gtttagaatatgaatgtaaagcagaacaaacataactattgttgtaactt
ttccttctctcttttttatattttttattacatattttcctcaattacat
ttccaatgctatcccaaaagtccccgataccctcccccccacttccctac
ccacccattcccatttttttggccctggcattcccctgtactggggcata
tacagtttgcgtgtccaataggactctctttccagtgatggccgactagg
ccatcttttgatacatatgcagctagagacaagagctccggggtactggt
tagttcataatgttgttccaccaatagggttgcagatccctttagctccc
ttgggtactttctctagctcctccattgggagccctgtggatccatccat
agctgactgtgagcatccacttctgtgtttggctaggcccggcataagtc
tcacagagacagctacatctgggtctttcgataaaatcttgcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_59952742_59953685
seq2: B6Ng01-113L03.g_69_1012 (reverse)

seq1  TAGCAAGATTTTATCGAAAGGACCCAGATGTAGCTGTCTCTTGTGAGAC-  49
      ||||||||||||||||||| |||||||||||||||||||| |||||||| 
seq2  TAGCAAGATTTTATCGAAA-GACCCAGATGTAGCTGTCTC-TGTGAGACT  48

seq1  TATGCCGGGGCCTAG-CAAACACAGAAGTGGATGCTCACAGTCAGCTATT  98
      |||||| |||||||| |||||||||||||||||||||||||||||||| |
seq2  TATGCC-GGGCCTAGCCAAACACAGAAGTGGATGCTCACAGTCAGCTA-T  96

seq1  GGATGGAT-CACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACCCAA-G  146
      |||||||| ||||||||||||||||||||||||||||||||||||||| |
seq2  GGATGGATCCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACCCAAGG  146

seq1  GAGCTAAAGGGATCTGCAACCCTATTGGTGGAACAACATTATGAACTAAC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAAAGGGATCTGCAACCCTATTGGTGGAACAACATTATGAACTAAC  196

seq1  CAGTACCCCGGAGCTCTTGTCTCTAGCTGCATATGTATCAAAAGATGGCC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCCCGGAGCTCTTGTCTCTAGCTGCATATGTATCAAAAGATGGCC  246

seq1  TAGTCGGCCATCACTGGAAAGAGAGTCCTATTGGACACGCAAACTGTATA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCGGCCATCACTGGAAAGAGAGTCCTATTGGACACGCAAACTGTATA  296

seq1  TGCCCCAGTACAGGGGAATGCCAGGGCCAAAAAAATGGGAATGGGTGGGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCAGTACAGGGGAATGCCAGGGCCAAAAAAATGGGAATGGGTGGGT  346

seq1  AGGGAAGTGGGGGGGAGGGTATCGGGGACTTTTGGGATAGCATTGGAAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGTGGGGGGGAGGGTATCGGGGACTTTTGGGATAGCATTGGAAAT  396

seq1  GTAATTGAGGAAAATATGTAATAAAAAATATAAAAAAGAGAGAAGGAAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGAGGAAAATATGTAATAAAAAATATAAAAAAGAGAGAAGGAAAA  446

seq1  GTTACAACAATAGTTATGTTTGTTCTGCTTTACATTCATATTCTAAACAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAACAATAGTTATGTTTGTTCTGCTTTACATTCATATTCTAAACAA  496

seq1  TAATACCAAACTTGACATTGTTAAAGGAGATCTATAAAGATGTTACATTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACCAAACTTGACATTGTTAAAGGAGATCTATAAAGATGTTACATTT  546

seq1  CATAATTAAGTACATGAAATTGATTTAGTTATTTTTGTTTGTTCTGCTTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTAAGTACATGAAATTGATTTAGTTATTTTTGTTTGTTCTGCTTA  596

seq1  CCCAATACATTATCCATTGCATTAGTCCTTCCAAAAGAGCTACATTACTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATACATTATCCATTGCATTAGTCCTTCCAAAAGAGCTACATTACTA  646

seq1  AATCTTTAGTGTATATATTCAACATACTCTGCCTCTTGAGAAGCATCAGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTAGTGTATATATTCAACATACTCTGCCTCTTGAGAAGCATCAGT  696

seq1  TGTATGAAATCTATTCCACATAATAATATCTTTTCCTAAGAATCCAGATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAAATCTATTCCACATAATAATATCTTTTCCTAAGAATCCAGATG  746

seq1  TGCTACTGCACTTTTCTAATACAAAAGAATGAGAAAGATACACTGAAGGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTGCACTTTTCTAATACAAAAGAATGAGAAAGATACACTGAAGGG  796

seq1  GAAGGAAAGTAGTTCTCATATTTCCTGCTTCTTCTTCCACCCATGTCTGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAGTAGTTCTCATATTTCCTGCTTCTTCTTCCACCCATGTCTGT  846

seq1  GAAGCACAATGCAGTGGATATTTTATATAGAGGAAGATTGGGGAAGGGTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACAATGCAGTGGATATTTTATATAGAGGAAGATTGGGGAAGGGTG  896

seq1  TGTGTGACTTCTACACAGATGCTAATAGCAGGTATCCCCTATGAATTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGACTTCTACACAGATGCTAATAGCAGGTATCCCCTATGAATTC  944